Wall clock time and date at job start Mon Mar 30 2020 06:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35185 * 116.99930 * 2 1 4 4 S 1.70016 * 124.09484 * 0.02562 * 3 2 1 5 5 C 1.75822 * 93.12132 * 179.97438 * 4 3 2 6 6 C 1.39637 * 130.26906 * 180.02562 * 5 4 3 7 7 C 1.38203 * 121.51597 * 179.97438 * 6 5 4 8 8 C 1.37521 * 121.19395 * 0.02562 * 7 6 5 9 9 C 1.40495 * 119.91886 * 0.27829 * 8 7 6 10 10 C 1.40686 * 120.45633 * 179.71670 * 9 8 7 11 11 H 1.08001 * 119.99643 * 209.04298 * 10 9 8 12 12 C 1.39908 * 120.00059 * 29.05420 * 10 9 8 13 13 N 1.30891 * 119.99929 * 11.87287 * 12 10 9 14 14 Si 1.86793 * 120.00199 * 191.87448 * 12 10 9 15 15 H 1.48508 * 109.46954 * 59.99975 * 14 12 10 16 16 H 1.48498 * 109.47244 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47341 * 300.00098 * 14 12 10 18 18 C 1.39373 * 110.05244 * 359.97438 * 5 4 3 19 19 C 1.36697 * 124.09164 * 180.02562 * 3 2 1 20 20 C 1.43204 * 123.23730 * 0.02562 * 19 3 2 21 21 N 3.67886 * 170.85908 * 180.08359 * 2 1 3 22 22 H 1.09001 * 109.47055 * 59.99854 * 1 2 3 23 23 H 1.09000 * 109.47286 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46745 * 299.99824 * 1 2 3 25 25 H 1.08001 * 119.24160 * 359.95915 * 6 5 4 26 26 H 1.08004 * 119.39937 * 180.02562 * 7 6 5 27 27 H 1.08003 * 120.04395 * 180.02562 * 8 7 6 28 28 H 0.96998 * 119.99893 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0428 1.2045 0.0000 4 16 1.2209 2.6929 0.0006 5 6 2.7116 3.6253 0.0010 6 6 2.9117 5.0072 0.0021 7 6 4.1813 5.5533 0.0027 8 6 5.3004 4.7541 0.0018 9 6 5.1630 3.3559 -0.0057 10 6 6.3002 2.5276 -0.0127 11 1 6.2542 1.5513 -0.4721 12 6 7.4905 2.9686 0.5757 13 7 7.4905 4.0382 1.3302 14 14 9.0796 2.0310 0.2847 15 1 9.3837 2.0115 -1.1688 16 1 10.1885 2.6982 1.0129 17 1 8.9302 0.6384 0.7778 18 6 3.8110 2.7687 0.0012 19 6 3.3993 1.3733 -0.0005 20 6 4.3261 0.2816 -0.0016 21 7 5.0612 -0.5844 -0.0009 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 2.0547 5.6645 0.0021 26 1 4.2965 6.6272 0.0039 27 1 6.2838 5.2007 0.0028 28 1 8.3156 4.3437 1.7384 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396215459.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:31 Heat of formation + Delta-G solvation = 29.141607 kcal Electronic energy + Delta-G solvation = -16142.551619 eV Core-core repulsion = 13443.277305 eV Total energy + Delta-G solvation = -2699.274314 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.96119 -37.84776 -35.64889 -34.26783 -33.11218 -29.90511 -28.54833 -26.82198 -25.21839 -23.83431 -21.26886 -20.69940 -18.47590 -17.28504 -16.98399 -15.71552 -15.54627 -15.37450 -15.00441 -13.74208 -13.54079 -13.19879 -13.05951 -12.85854 -12.23510 -12.10636 -12.00183 -11.70308 -11.52800 -11.39397 -11.25339 -11.12729 -10.65546 -10.58621 -9.89128 -9.69436 -9.62804 -9.34855 -8.28825 -7.37381 -7.06076 -6.87364 -4.55601 1.44225 1.83641 2.42881 2.55235 2.72999 2.96932 3.02993 3.09820 3.44418 3.64515 3.79238 4.25392 4.40782 4.98260 5.16961 5.18777 5.33530 5.46374 5.90783 6.10783 6.19399 6.53887 6.73347 6.78161 6.94222 7.06503 7.22481 7.40011 7.68330 7.77215 7.91188 8.33348 8.42514 8.51691 8.61672 9.87793 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.022497 B = 0.008297 C = 0.006173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.332768 B = 3373.825200 C = 4534.799433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.282 6.282 3 C -0.010 4.010 4 S 0.083 5.917 5 C -0.092 4.092 6 C -0.217 4.217 7 C -0.067 4.067 8 C -0.175 4.175 9 C 0.149 3.851 10 C -0.429 4.429 11 H 0.086 0.914 12 C 0.075 3.925 13 N -0.773 5.773 14 Si 0.911 3.089 15 H -0.259 1.259 16 H -0.273 1.273 17 H -0.259 1.259 18 C -0.136 4.136 19 C -0.037 4.037 20 C 0.306 3.694 21 N -0.451 5.451 22 H 0.058 0.942 23 H 0.103 0.897 24 H 0.058 0.942 25 H 0.095 0.905 26 H 0.099 0.901 27 H 0.127 0.873 28 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.826 0.238 -1.447 8.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.196 6.196 3 C -0.174 4.174 4 S 0.345 5.655 5 C -0.206 4.206 6 C -0.242 4.242 7 C -0.088 4.088 8 C -0.196 4.196 9 C 0.144 3.856 10 C -0.457 4.457 11 H 0.104 0.896 12 C -0.146 4.146 13 N -0.396 5.396 14 Si 0.735 3.265 15 H -0.183 1.183 16 H -0.198 1.198 17 H -0.183 1.183 18 C -0.143 4.143 19 C -0.054 4.054 20 C -0.009 4.009 21 N -0.129 5.129 22 H 0.077 0.923 23 H 0.121 0.879 24 H 0.077 0.923 25 H 0.114 0.886 26 H 0.117 0.883 27 H 0.145 0.855 28 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.974 -0.849 -1.282 9.105 hybrid contribution 1.602 -0.310 0.058 1.633 sum -7.372 -1.159 -1.224 7.562 Atomic orbital electron populations 1.23179 0.78326 1.04163 1.01905 1.85831 1.20784 1.23496 1.89465 1.22392 0.94433 0.89866 1.10713 1.82434 1.09250 0.93474 1.80358 1.21713 0.92515 0.97490 1.08912 1.19476 0.96502 0.90268 1.17987 1.20474 0.92205 0.97909 0.98216 1.21095 0.97858 0.92553 1.08079 1.18272 0.88123 0.92183 0.87011 1.19689 0.93906 1.02655 1.29449 0.89578 1.25985 1.01139 0.94823 0.92688 1.69803 1.30075 1.19867 1.19872 0.86253 0.79310 0.80775 0.80186 1.18314 1.19809 1.18331 1.19327 0.93987 0.86923 1.14055 1.15511 0.86364 0.89524 1.14046 1.24733 0.91948 0.91481 0.92730 1.81041 1.09437 1.11860 1.10545 0.92303 0.87909 0.92293 0.88649 0.88289 0.85545 0.90087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 10.20 101.05 1.03 1.27 15 2 O -0.28 -4.87 10.26 -17.25 -0.18 -5.05 15 3 C -0.01 -0.19 7.00 30.18 0.21 0.02 15 4 S 0.08 1.42 21.43 -107.50 -2.30 -0.88 15 5 C -0.09 -1.95 6.44 -38.64 -0.25 -2.20 15 6 C -0.22 -4.43 10.02 -39.07 -0.39 -4.82 15 7 C -0.07 -1.41 9.95 -39.86 -0.40 -1.81 15 8 C -0.17 -4.15 8.64 -38.99 -0.34 -4.49 15 9 C 0.15 3.78 5.72 -104.39 -0.60 3.18 15 10 C -0.43 -11.06 8.31 -38.03 -0.32 -11.37 15 11 H 0.09 2.26 5.76 -52.49 -0.30 1.96 15 12 C 0.07 1.81 5.23 -17.33 -0.09 1.72 15 13 N -0.77 -18.70 10.92 55.55 0.61 -18.09 15 14 Si 0.91 18.76 29.58 -169.99 -5.03 13.73 15 15 H -0.26 -5.26 7.11 56.52 0.40 -4.86 15 16 H -0.27 -5.32 7.11 56.52 0.40 -4.91 15 17 H -0.26 -5.56 7.11 56.52 0.40 -5.16 15 18 C -0.14 -3.24 6.19 -102.86 -0.64 -3.88 15 19 C -0.04 -0.84 5.88 -105.64 -0.62 -1.46 15 20 C 0.31 7.24 12.93 -22.47 -0.29 6.95 15 21 N -0.45 -10.92 18.20 41.84 0.76 -10.15 15 22 H 0.06 0.61 7.97 -51.93 -0.41 0.20 15 23 H 0.10 0.90 8.14 -51.93 -0.42 0.48 15 24 H 0.06 0.62 7.97 -51.93 -0.41 0.20 15 25 H 0.10 1.69 8.06 -52.49 -0.42 1.27 15 26 H 0.10 1.79 8.06 -52.48 -0.42 1.37 15 27 H 0.13 3.06 6.28 -52.48 -0.33 2.73 15 28 H 0.29 6.31 8.30 -40.82 -0.34 5.97 15 LS Contribution 268.75 15.07 4.05 4.05 Total: -1.00 -27.39 268.75 -6.64 -34.03 By element: Atomic # 1 Polarization: 1.11 SS G_CDS: -1.86 Total: -0.75 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: -2.68 Total: -16.89 kcal Atomic # 7 Polarization: -29.61 SS G_CDS: 1.37 Total: -28.24 kcal Atomic # 8 Polarization: -4.87 SS G_CDS: -0.18 Total: -5.05 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Atomic # 16 Polarization: 1.42 SS G_CDS: -2.30 Total: -0.88 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -27.39 -6.64 -34.03 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396215459.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.170 kcal (2) G-P(sol) polarization free energy of solvation -27.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds