Wall clock time and date at job start Mon Mar 30 2020 06:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35185 * 116.99930 * 2 1 4 4 S 1.70016 * 124.09484 * 0.02562 * 3 2 1 5 5 C 1.75822 * 93.12132 * 179.97438 * 4 3 2 6 6 C 1.39637 * 130.26906 * 180.02562 * 5 4 3 7 7 C 1.38203 * 121.51597 * 179.97438 * 6 5 4 8 8 C 1.37521 * 121.19395 * 0.02562 * 7 6 5 9 9 C 1.40495 * 119.91886 * 0.27829 * 8 7 6 10 10 C 1.40686 * 120.45633 * 179.71670 * 9 8 7 11 11 H 1.08001 * 119.99643 * 209.04298 * 10 9 8 12 12 C 1.39908 * 120.00059 * 29.05420 * 10 9 8 13 13 N 1.30891 * 119.99929 * 11.87287 * 12 10 9 14 14 Si 1.86793 * 120.00199 * 191.87448 * 12 10 9 15 15 H 1.48508 * 109.46954 * 59.99975 * 14 12 10 16 16 H 1.48498 * 109.47244 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47341 * 300.00098 * 14 12 10 18 18 C 1.39373 * 110.05244 * 359.97438 * 5 4 3 19 19 C 1.36697 * 124.09164 * 180.02562 * 3 2 1 20 20 C 1.43204 * 123.23730 * 0.02562 * 19 3 2 21 21 N 3.67886 * 170.85908 * 180.08359 * 2 1 3 22 22 H 1.09001 * 109.47055 * 59.99854 * 1 2 3 23 23 H 1.09000 * 109.47286 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46745 * 299.99824 * 1 2 3 25 25 H 1.08001 * 119.24160 * 359.95915 * 6 5 4 26 26 H 1.08004 * 119.39937 * 180.02562 * 7 6 5 27 27 H 1.08003 * 120.04395 * 180.02562 * 8 7 6 28 28 H 0.96998 * 119.99893 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0428 1.2045 0.0000 4 16 1.2209 2.6929 0.0006 5 6 2.7116 3.6253 0.0010 6 6 2.9117 5.0072 0.0021 7 6 4.1813 5.5533 0.0027 8 6 5.3004 4.7541 0.0018 9 6 5.1630 3.3559 -0.0057 10 6 6.3002 2.5276 -0.0127 11 1 6.2542 1.5513 -0.4721 12 6 7.4905 2.9686 0.5757 13 7 7.4905 4.0382 1.3302 14 14 9.0796 2.0310 0.2847 15 1 9.3837 2.0115 -1.1688 16 1 10.1885 2.6982 1.0129 17 1 8.9302 0.6384 0.7778 18 6 3.8110 2.7687 0.0012 19 6 3.3993 1.3733 -0.0005 20 6 4.3261 0.2816 -0.0016 21 7 5.0612 -0.5844 -0.0009 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 2.0547 5.6645 0.0021 26 1 4.2965 6.6272 0.0039 27 1 6.2838 5.2007 0.0028 28 1 8.3156 4.3437 1.7384 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396215459.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:31 Heat of formation + Delta-G solvation = 14.055937 kcal Electronic energy + Delta-G solvation = -16143.205783 eV Core-core repulsion = 13443.277305 eV Total energy + Delta-G solvation = -2699.928478 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.45609 -39.44005 -37.41544 -35.98372 -34.77372 -31.63286 -30.05190 -28.07503 -26.90537 -25.44740 -22.92408 -22.40131 -20.06680 -18.93138 -18.49716 -17.22714 -16.99616 -16.95793 -16.59230 -15.35232 -15.13447 -14.82734 -14.63433 -14.52359 -13.96442 -13.73336 -13.51501 -13.29839 -13.03823 -12.97849 -12.88496 -12.59257 -12.23997 -12.12330 -11.55794 -11.35395 -11.30026 -10.98530 -9.94791 -8.97817 -8.76825 -8.50617 -6.35971 -0.17371 0.30239 0.82891 0.83902 0.99210 1.28444 1.38108 1.43039 1.83855 2.11222 2.14190 2.48737 2.63675 3.34730 3.56304 4.23808 4.30840 4.33495 4.49437 4.57542 4.69594 4.93685 5.03293 5.06890 5.18980 5.39760 5.67426 5.85679 5.96357 6.07416 6.17282 6.57463 6.65409 6.75106 6.87046 8.17859 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.022497 B = 0.008297 C = 0.006173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.332768 B = 3373.825200 C = 4534.799433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.002 3.998 2 O -0.297 6.297 3 C 0.026 3.974 4 S 0.202 5.798 5 C -0.130 4.130 6 C -0.201 4.201 7 C -0.072 4.072 8 C -0.195 4.195 9 C 0.115 3.885 10 C -0.472 4.472 11 H 0.067 0.933 12 C 0.044 3.956 13 N -0.802 5.802 14 Si 0.963 3.037 15 H -0.257 1.257 16 H -0.251 1.251 17 H -0.277 1.277 18 C -0.146 4.146 19 C -0.102 4.102 20 C 0.312 3.688 21 N -0.484 5.484 22 H 0.078 0.922 23 H 0.135 0.865 24 H 0.076 0.924 25 H 0.133 0.867 26 H 0.129 0.871 27 H 0.112 0.888 28 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.325 0.846 -1.523 12.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 O -0.210 6.210 3 C -0.141 4.141 4 S 0.464 5.536 5 C -0.245 4.245 6 C -0.225 4.225 7 C -0.093 4.093 8 C -0.216 4.216 9 C 0.110 3.890 10 C -0.501 4.501 11 H 0.085 0.915 12 C -0.174 4.174 13 N -0.427 5.427 14 Si 0.784 3.216 15 H -0.181 1.181 16 H -0.175 1.175 17 H -0.202 1.202 18 C -0.153 4.153 19 C -0.119 4.119 20 C -0.002 4.002 21 N -0.163 5.163 22 H 0.096 0.904 23 H 0.153 0.847 24 H 0.095 0.905 25 H 0.151 0.849 26 H 0.147 0.853 27 H 0.129 0.871 28 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.497 -0.225 -1.361 12.573 hybrid contribution 2.168 -0.550 0.054 2.238 sum -10.329 -0.775 -1.307 10.440 Atomic orbital electron populations 1.23736 0.74749 1.07115 1.03608 1.85871 1.24319 1.22615 1.88173 1.22842 0.94180 0.92111 1.04927 1.81970 1.04421 0.89379 1.77834 1.22186 0.94756 0.98208 1.09303 1.19936 0.97321 0.90522 1.14756 1.20816 0.91856 0.99307 0.97276 1.21073 0.98367 0.92493 1.09688 1.18585 0.89101 0.93020 0.88255 1.19670 0.95642 1.02544 1.32265 0.91523 1.26504 1.02958 0.95625 0.92302 1.69814 1.30851 1.21037 1.20983 0.85526 0.77178 0.78717 0.80163 1.18149 1.17461 1.20247 1.19558 0.94355 0.88113 1.13286 1.15635 0.87755 0.88864 1.19656 1.25112 0.91796 0.91447 0.91859 1.80993 1.09883 1.13041 1.12428 0.90390 0.84742 0.90527 0.84926 0.85267 0.87051 0.89488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.04 10.20 113.37 1.16 1.20 15 2 O -0.30 -9.25 10.26 -84.65 -0.87 -10.12 15 3 C 0.03 0.93 7.00 67.46 0.47 1.40 15 4 S 0.20 5.96 21.43 -56.49 -1.21 4.74 15 5 C -0.13 -5.21 6.44 22.88 0.15 -5.06 15 6 C -0.20 -7.57 10.02 22.60 0.23 -7.35 15 7 C -0.07 -2.94 9.95 22.09 0.22 -2.72 15 8 C -0.19 -9.54 8.64 22.65 0.20 -9.34 15 9 C 0.11 6.07 5.72 -19.72 -0.11 5.96 15 10 C -0.47 -25.96 8.31 23.27 0.19 -25.76 15 11 H 0.07 3.78 5.76 -2.91 -0.02 3.76 15 12 C 0.04 2.23 5.23 85.24 0.45 2.68 15 13 N -0.80 -40.70 10.92 21.82 0.24 -40.47 15 14 Si 0.96 40.51 29.58 68.60 2.03 42.54 15 15 H -0.26 -10.58 7.11 99.48 0.71 -9.87 15 16 H -0.25 -9.51 7.11 99.48 0.71 -8.80 15 17 H -0.28 -12.31 7.11 99.48 0.71 -11.60 15 18 C -0.15 -7.01 6.19 -18.72 -0.12 -7.12 15 19 C -0.10 -4.59 5.88 -20.52 -0.12 -4.71 15 20 C 0.31 15.29 12.93 88.33 1.14 16.44 15 21 N -0.48 -24.55 18.20 19.00 0.35 -24.20 15 22 H 0.08 1.16 7.97 -2.39 -0.02 1.14 15 23 H 0.13 1.65 8.14 -2.39 -0.02 1.63 15 24 H 0.08 1.16 7.97 -2.39 -0.02 1.14 15 25 H 0.13 3.99 8.06 -2.91 -0.02 3.97 15 26 H 0.13 4.37 8.06 -2.91 -0.02 4.35 15 27 H 0.11 5.67 6.28 -2.91 -0.02 5.66 15 28 H 0.29 13.43 8.30 -92.71 -0.77 12.66 15 Total: -1.00 -63.45 268.75 5.60 -57.86 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: 1.21 Total: 4.04 kcal Atomic # 6 Polarization: -38.25 SS G_CDS: 3.85 Total: -34.40 kcal Atomic # 7 Polarization: -65.25 SS G_CDS: 0.58 Total: -64.67 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: -0.87 Total: -10.12 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 2.03 Total: 42.54 kcal Atomic # 16 Polarization: 5.96 SS G_CDS: -1.21 Total: 4.74 kcal Total: -63.45 5.60 -57.86 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396215459.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.913 kcal (2) G-P(sol) polarization free energy of solvation -63.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds