Wall clock time and date at job start Mon Mar 30 2020 06:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35487 * 117.00217 * 2 1 4 4 C 1.41310 * 119.84944 * 270.24357 * 3 2 1 5 5 C 1.45485 * 128.34285 * 359.97438 * 4 3 2 6 6 C 1.31874 * 114.94165 * 180.24941 * 5 4 3 7 7 S 1.75230 * 111.44100 * 0.02562 * 6 5 4 8 8 C 1.40007 * 119.86216 * 180.25718 * 4 3 2 9 9 C 1.40085 * 120.87043 * 359.74787 * 8 4 3 10 10 C 1.38495 * 120.91125 * 0.02562 * 9 8 4 11 11 C 1.43198 * 120.46308 * 179.97438 * 10 9 8 12 12 N 5.92412 * 112.01020 * 38.11667 * 2 1 3 13 13 C 1.40566 * 119.85280 * 89.99587 * 3 2 1 14 14 C 1.40438 * 120.51011 * 0.02562 * 13 3 2 15 15 H 1.08002 * 119.99596 * 219.41148 * 14 13 3 16 16 C 1.40086 * 119.99765 * 39.40497 * 14 13 3 17 17 N 1.30806 * 120.00179 * 19.80629 * 16 14 13 18 18 Si 1.86806 * 119.99760 * 200.07988 * 16 14 13 19 19 H 1.48497 * 109.47232 * 179.72627 * 18 16 14 20 20 H 1.48508 * 109.46794 * 299.72742 * 18 16 14 21 21 H 1.48497 * 109.47141 * 59.72475 * 18 16 14 22 22 H 1.08997 * 109.47647 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47614 * 300.00449 * 1 2 3 24 24 H 1.09004 * 109.46630 * 60.00404 * 1 2 3 25 25 H 1.08001 * 122.52912 * 0.23378 * 5 4 3 26 26 H 1.07998 * 124.28421 * 179.97438 * 6 5 4 27 27 H 1.07995 * 119.54406 * 179.97438 * 9 8 4 28 28 H 0.97005 * 119.99601 * 174.93706 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2072 0.0000 4 6 2.3588 1.8362 -1.2256 5 6 2.1087 1.3570 -2.5763 6 6 2.5199 2.1617 -3.5369 7 16 3.2658 3.6074 -2.8859 8 6 2.9993 3.0812 -1.2260 9 6 3.3305 3.7194 -0.0237 10 6 3.0338 3.1360 1.1968 11 6 3.3772 3.7967 2.4199 12 7 3.6491 4.3211 3.3902 13 6 2.3617 1.8306 1.2191 14 6 2.0468 1.2117 2.4398 15 1 1.6815 1.8028 3.2665 16 6 2.2064 -0.1725 2.5849 17 7 2.9873 -0.8301 1.7671 18 14 1.2979 -1.0803 3.9414 19 1 1.6292 -2.5264 3.8773 20 1 1.7077 -0.5366 5.2612 21 1 -0.1653 -0.8993 3.7642 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 1.6233 0.4134 -2.7773 26 1 2.4114 1.9553 -4.5914 27 1 3.8248 4.6793 -0.0490 28 1 3.1558 -1.7744 1.9117 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396215474.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:47 Heat of formation + Delta-G solvation = 31.596203 kcal Electronic energy + Delta-G solvation = -16535.105931 eV Core-core repulsion = 13835.938056 eV Total energy + Delta-G solvation = -2699.167875 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.82088 -36.39371 -35.73843 -34.30681 -33.16431 -29.76017 -28.66790 -26.39364 -25.29363 -22.93139 -21.70344 -20.13252 -18.27326 -17.31725 -16.34240 -15.59267 -15.15337 -15.08037 -14.28529 -13.94554 -13.51123 -13.11169 -12.91077 -12.77279 -12.37743 -12.18711 -11.79732 -11.61079 -11.50680 -11.34381 -11.16412 -10.93461 -10.47985 -10.37627 -10.00718 -9.90987 -9.32738 -8.78083 -8.32459 -7.54152 -7.05159 -6.87816 -4.65574 1.34036 2.35087 2.37491 2.77317 2.79876 2.96007 2.98295 3.02321 3.70470 3.75766 3.92325 4.42554 4.86498 5.06904 5.25540 5.37358 5.73708 6.02259 6.05224 6.11901 6.24523 6.32904 6.46701 6.65926 6.70891 6.86938 7.02342 7.15192 7.36608 7.51628 7.96836 8.24290 8.44582 8.58278 8.91491 9.91648 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.021207 B = 0.009044 C = 0.006747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.978305 B = 3095.137285 C = 4149.048781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.292 6.292 3 C 0.054 3.946 4 C -0.041 4.041 5 C -0.107 4.107 6 C -0.196 4.196 7 S 0.009 5.991 8 C -0.227 4.227 9 C -0.001 4.001 10 C -0.121 4.121 11 C 0.300 3.700 12 N -0.486 5.486 13 C 0.138 3.862 14 C -0.443 4.443 15 H 0.088 0.912 16 C 0.089 3.911 17 N -0.727 5.727 18 Si 0.905 3.095 19 H -0.274 1.274 20 H -0.264 1.264 21 H -0.259 1.259 22 H 0.071 0.929 23 H 0.041 0.959 24 H 0.028 0.972 25 H 0.133 0.867 26 H 0.153 0.847 27 H 0.109 0.891 28 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.681 -0.603 -6.696 7.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.207 6.207 3 C 0.006 3.994 4 C -0.048 4.048 5 C -0.139 4.139 6 C -0.330 4.330 7 S 0.267 5.733 8 C -0.341 4.341 9 C -0.026 4.026 10 C -0.128 4.128 11 C -0.012 4.012 12 N -0.164 5.164 13 C 0.131 3.869 14 C -0.470 4.470 15 H 0.106 0.894 16 C -0.138 4.138 17 N -0.346 5.346 18 Si 0.728 3.272 19 H -0.198 1.198 20 H -0.189 1.189 21 H -0.183 1.183 22 H 0.090 0.910 23 H 0.060 0.940 24 H 0.046 0.954 25 H 0.151 0.849 26 H 0.170 0.830 27 H 0.127 0.873 28 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.474 1.003 -6.015 6.580 hybrid contribution -1.222 -1.857 0.717 2.336 sum -3.696 -0.854 -5.297 6.516 Atomic orbital electron populations 1.22803 0.83215 1.00848 0.99508 1.86104 1.16341 1.24618 1.93660 1.18140 1.03738 0.88669 0.88886 1.19369 0.99586 0.93127 0.92698 1.20993 1.01724 1.00066 0.91074 1.24737 1.07037 0.99006 1.02178 1.83496 1.67812 1.23457 0.98542 1.21362 1.17157 1.00550 0.95016 1.19901 0.96459 0.97217 0.89036 1.16747 1.11079 0.99438 0.85555 1.25477 0.91834 0.91393 0.92445 1.81045 1.12654 1.11888 1.10783 1.18297 0.88114 0.87635 0.92815 1.19341 1.37277 0.92555 0.97871 0.89428 1.25818 0.93942 0.97208 0.96852 1.69646 1.22938 1.11096 1.30960 0.86385 0.81191 0.78479 0.81096 1.19845 1.18852 1.18342 0.91050 0.94021 0.95387 0.84926 0.82953 0.87318 0.89894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 11.13 101.05 1.12 1.70 15 2 O -0.29 -6.45 7.16 -18.15 -0.13 -6.58 15 3 C 0.05 1.24 5.27 -37.54 -0.20 1.04 15 4 C -0.04 -0.87 6.02 -105.18 -0.63 -1.50 15 5 C -0.11 -1.94 10.22 -38.60 -0.39 -2.34 15 6 C -0.20 -3.15 11.01 28.83 0.32 -2.83 15 7 S 0.01 0.15 23.24 -107.50 -2.50 -2.35 15 8 C -0.23 -4.62 6.46 -38.23 -0.25 -4.86 15 9 C 0.00 -0.02 9.74 -38.79 -0.38 -0.40 15 10 C -0.12 -2.71 5.92 -104.40 -0.62 -3.33 15 11 C 0.30 6.78 14.49 -22.47 -0.33 6.46 15 12 N -0.49 -11.25 18.54 41.84 0.78 -10.48 15 13 C 0.14 3.29 5.50 -104.71 -0.58 2.72 15 14 C -0.44 -10.64 8.16 -38.06 -0.31 -10.95 15 15 H 0.09 2.10 7.76 -52.49 -0.41 1.69 15 16 C 0.09 2.03 4.41 -17.30 -0.08 1.95 15 17 N -0.73 -17.29 11.26 55.56 0.63 -16.66 15 18 Si 0.90 17.39 29.61 -169.99 -5.03 12.35 15 19 H -0.27 -5.11 7.11 56.52 0.40 -4.70 15 20 H -0.26 -5.15 7.11 56.52 0.40 -4.75 15 21 H -0.26 -4.86 7.11 56.52 0.40 -4.46 15 22 H 0.07 1.12 8.14 -51.93 -0.42 0.70 15 23 H 0.04 0.77 8.14 -51.93 -0.42 0.35 15 24 H 0.03 0.46 8.14 -51.93 -0.42 0.04 15 25 H 0.13 2.20 8.06 -52.49 -0.42 1.78 15 26 H 0.15 1.92 8.06 -52.49 -0.42 1.50 15 27 H 0.11 1.95 8.06 -52.49 -0.42 1.53 15 28 H 0.29 6.32 8.30 -40.82 -0.34 5.98 15 LS Contribution 274.12 15.07 4.13 4.13 Total: -1.00 -25.78 274.12 -6.52 -32.30 By element: Atomic # 1 Polarization: 1.72 SS G_CDS: -2.08 Total: -0.36 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: -2.32 Total: -12.36 kcal Atomic # 7 Polarization: -28.54 SS G_CDS: 1.40 Total: -27.14 kcal Atomic # 8 Polarization: -6.45 SS G_CDS: -0.13 Total: -6.58 kcal Atomic # 14 Polarization: 17.39 SS G_CDS: -5.03 Total: 12.35 kcal Atomic # 16 Polarization: 0.15 SS G_CDS: -2.50 Total: -2.35 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -25.78 -6.52 -32.30 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396215474.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.899 kcal (2) G-P(sol) polarization free energy of solvation -25.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds