Wall clock time and date at job start Mon Mar 30 2020 06:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35487 * 117.00217 * 2 1 4 4 C 1.41310 * 119.84944 * 270.24357 * 3 2 1 5 5 C 1.45485 * 128.34285 * 359.97438 * 4 3 2 6 6 C 1.31874 * 114.94165 * 180.24941 * 5 4 3 7 7 S 1.75230 * 111.44100 * 0.02562 * 6 5 4 8 8 C 1.40007 * 119.86216 * 180.25718 * 4 3 2 9 9 C 1.40085 * 120.87043 * 359.74787 * 8 4 3 10 10 C 1.38495 * 120.91125 * 0.02562 * 9 8 4 11 11 C 1.43198 * 120.46308 * 179.97438 * 10 9 8 12 12 N 5.92412 * 112.01020 * 38.11667 * 2 1 3 13 13 C 1.40566 * 119.85280 * 89.99587 * 3 2 1 14 14 C 1.40438 * 120.51011 * 0.02562 * 13 3 2 15 15 H 1.08002 * 119.99596 * 219.41148 * 14 13 3 16 16 C 1.40086 * 119.99765 * 39.40497 * 14 13 3 17 17 N 1.30806 * 120.00179 * 19.80629 * 16 14 13 18 18 Si 1.86806 * 119.99760 * 200.07988 * 16 14 13 19 19 H 1.48497 * 109.47232 * 179.72627 * 18 16 14 20 20 H 1.48508 * 109.46794 * 299.72742 * 18 16 14 21 21 H 1.48497 * 109.47141 * 59.72475 * 18 16 14 22 22 H 1.08997 * 109.47647 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47614 * 300.00449 * 1 2 3 24 24 H 1.09004 * 109.46630 * 60.00404 * 1 2 3 25 25 H 1.08001 * 122.52912 * 0.23378 * 5 4 3 26 26 H 1.07998 * 124.28421 * 179.97438 * 6 5 4 27 27 H 1.07995 * 119.54406 * 179.97438 * 9 8 4 28 28 H 0.97005 * 119.99601 * 174.93706 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2072 0.0000 4 6 2.3588 1.8362 -1.2256 5 6 2.1087 1.3570 -2.5763 6 6 2.5199 2.1617 -3.5369 7 16 3.2658 3.6074 -2.8859 8 6 2.9993 3.0812 -1.2260 9 6 3.3305 3.7194 -0.0237 10 6 3.0338 3.1360 1.1968 11 6 3.3772 3.7967 2.4199 12 7 3.6491 4.3211 3.3902 13 6 2.3617 1.8306 1.2191 14 6 2.0468 1.2117 2.4398 15 1 1.6815 1.8028 3.2665 16 6 2.2064 -0.1725 2.5849 17 7 2.9873 -0.8301 1.7671 18 14 1.2979 -1.0803 3.9414 19 1 1.6292 -2.5264 3.8773 20 1 1.7077 -0.5366 5.2612 21 1 -0.1653 -0.8993 3.7642 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 1.6233 0.4134 -2.7773 26 1 2.4114 1.9553 -4.5914 27 1 3.8248 4.6793 -0.0490 28 1 3.1558 -1.7744 1.9117 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396215474.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:47 Heat of formation + Delta-G solvation = 19.222601 kcal Electronic energy + Delta-G solvation = -16535.642491 eV Core-core repulsion = 13835.938056 eV Total energy + Delta-G solvation = -2699.704435 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.42387 -38.03071 -37.39093 -35.98431 -34.77577 -31.41769 -30.23249 -27.97273 -26.87949 -24.50591 -23.30774 -21.64885 -19.90796 -18.99024 -17.85387 -17.20045 -16.75655 -16.65178 -15.83155 -15.51414 -14.90523 -14.70228 -14.62841 -14.39641 -13.93289 -13.75126 -13.50701 -13.28011 -13.13235 -12.89643 -12.63436 -12.50956 -12.04050 -11.84911 -11.52228 -11.46447 -10.98044 -10.36320 -9.87173 -9.15448 -8.72480 -8.39106 -6.39193 -0.23382 0.70872 0.94713 1.25179 1.33530 1.38986 1.47435 1.49515 1.90515 2.17931 2.26669 2.70288 3.22763 3.35710 3.61511 4.03716 4.22638 4.58920 4.62715 4.71011 4.80179 4.89873 4.98241 5.07862 5.14578 5.25046 5.37475 5.59000 5.75892 5.87060 6.23344 6.53691 6.72362 6.79969 7.30499 8.26594 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.021207 B = 0.009044 C = 0.006747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.978305 B = 3095.137285 C = 4149.048781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.308 6.308 3 C 0.037 3.963 4 C -0.052 4.052 5 C -0.134 4.134 6 C -0.171 4.171 7 S 0.054 5.946 8 C -0.244 4.244 9 C 0.001 3.999 10 C -0.140 4.140 11 C 0.307 3.693 12 N -0.503 5.503 13 C 0.116 3.884 14 C -0.476 4.476 15 H 0.073 0.927 16 C 0.063 3.937 17 N -0.761 5.761 18 Si 0.959 3.041 19 H -0.262 1.262 20 H -0.271 1.271 21 H -0.252 1.252 22 H 0.094 0.906 23 H 0.029 0.971 24 H 0.042 0.958 25 H 0.146 0.854 26 H 0.196 0.804 27 H 0.133 0.867 28 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.046 -0.627 -8.925 9.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.224 6.224 3 C -0.011 4.011 4 C -0.060 4.060 5 C -0.165 4.165 6 C -0.304 4.304 7 S 0.313 5.687 8 C -0.358 4.358 9 C -0.024 4.024 10 C -0.147 4.147 11 C -0.004 4.004 12 N -0.182 5.182 13 C 0.110 3.890 14 C -0.504 4.504 15 H 0.091 0.909 16 C -0.161 4.161 17 N -0.382 5.382 18 Si 0.780 3.220 19 H -0.186 1.186 20 H -0.196 1.196 21 H -0.176 1.176 22 H 0.113 0.887 23 H 0.048 0.952 24 H 0.061 0.939 25 H 0.163 0.837 26 H 0.213 0.787 27 H 0.150 0.850 28 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.840 0.994 -8.255 8.787 hybrid contribution -1.077 -1.718 1.169 2.340 sum -3.916 -0.724 -7.086 8.129 Atomic orbital electron populations 1.22944 0.81510 1.02433 0.99627 1.86037 1.18076 1.24544 1.93749 1.18293 1.04540 0.89045 0.89270 1.19769 0.99034 0.93400 0.93772 1.21045 1.04036 1.01574 0.89882 1.25274 1.03832 0.97392 1.03914 1.83397 1.66954 1.23227 0.95117 1.21853 1.16122 1.00547 0.97254 1.20146 0.95759 0.97949 0.88512 1.16925 1.12086 0.99519 0.86196 1.25609 0.91353 0.90989 0.92423 1.81022 1.13489 1.12642 1.11014 1.18605 0.88493 0.88432 0.93503 1.19359 1.39663 0.93470 0.97907 0.90865 1.26367 0.93920 0.97256 0.98538 1.69681 1.24235 1.11513 1.32744 0.85582 0.80366 0.77823 0.78180 1.18611 1.19582 1.17613 0.88719 0.95205 0.93916 0.83667 0.78669 0.84951 0.89466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.06 11.13 113.37 1.26 2.32 15 2 O -0.31 -13.67 7.16 -87.87 -0.63 -14.30 15 3 C 0.04 1.69 5.27 23.59 0.12 1.82 15 4 C -0.05 -2.17 6.02 -20.23 -0.12 -2.29 15 5 C -0.13 -4.51 10.22 23.32 0.24 -4.28 15 6 C -0.17 -4.73 11.01 67.00 0.74 -3.99 15 7 S 0.05 1.64 23.24 -56.49 -1.31 0.33 15 8 C -0.24 -9.52 6.46 23.15 0.15 -9.37 15 9 C 0.00 0.05 9.74 22.78 0.22 0.27 15 10 C -0.14 -6.39 5.92 -19.72 -0.12 -6.51 15 11 C 0.31 14.19 14.49 88.33 1.28 15.47 15 12 N -0.50 -23.73 18.54 19.00 0.35 -23.38 15 13 C 0.12 5.70 5.50 -19.92 -0.11 5.59 15 14 C -0.48 -23.76 8.16 23.25 0.19 -23.57 15 15 H 0.07 3.71 7.76 -2.91 -0.02 3.69 15 16 C 0.06 2.94 4.41 85.29 0.38 3.31 15 17 N -0.76 -36.96 11.26 21.86 0.25 -36.71 15 18 Si 0.96 36.12 29.61 68.60 2.03 38.15 15 19 H -0.26 -9.26 7.11 99.48 0.71 -8.55 15 20 H -0.27 -10.39 7.11 99.48 0.71 -9.68 15 21 H -0.25 -9.10 7.11 99.48 0.71 -8.39 15 22 H 0.09 2.86 8.14 -2.39 -0.02 2.84 15 23 H 0.03 1.11 8.14 -2.39 -0.02 1.09 15 24 H 0.04 1.36 8.14 -2.38 -0.02 1.34 15 25 H 0.15 4.45 8.06 -2.91 -0.02 4.43 15 26 H 0.20 3.72 8.06 -2.91 -0.02 3.70 15 27 H 0.13 4.54 8.06 -2.91 -0.02 4.52 15 28 H 0.29 13.04 8.30 -92.70 -0.77 12.27 15 Total: -1.00 -56.00 274.12 6.12 -49.88 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: 1.20 Total: 7.25 kcal Atomic # 6 Polarization: -25.45 SS G_CDS: 4.23 Total: -21.22 kcal Atomic # 7 Polarization: -60.69 SS G_CDS: 0.60 Total: -60.09 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -0.63 Total: -14.30 kcal Atomic # 14 Polarization: 36.12 SS G_CDS: 2.03 Total: 38.15 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -1.31 Total: 0.33 kcal Total: -56.00 6.12 -49.88 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396215474.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.100 kcal (2) G-P(sol) polarization free energy of solvation -55.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds