Wall clock time and date at job start Mon Mar 30 2020 06:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.39242 * 119.99705 * 243.05965 * 3 2 1 5 5 C 1.38172 * 120.00959 * 179.73939 * 4 3 2 6 6 C 1.37708 * 120.48126 * 0.20777 * 5 4 3 7 7 C 1.50702 * 119.66504 * 180.02562 * 6 5 4 8 8 O 1.42903 * 109.46843 * 0.02714 * 7 6 5 9 9 C 1.40512 * 120.66510 * 0.04365 * 6 5 4 10 10 C 1.46697 * 129.48997 * 179.97438 * 9 6 5 11 11 C 1.40786 * 123.29568 * 0.02891 * 10 9 6 12 12 H 1.08008 * 120.00178 * 26.51784 * 11 10 9 13 13 C 1.39750 * 120.00163 * 206.52539 * 11 10 9 14 14 N 1.31051 * 120.00074 * 9.65564 * 13 11 10 15 15 Si 1.86799 * 120.00181 * 189.66354 * 13 11 10 16 16 H 1.48498 * 109.47321 * 59.99291 * 15 13 11 17 17 H 1.48501 * 109.47107 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.46994 * 299.99504 * 15 13 11 19 19 C 1.36400 * 113.41093 * 180.02562 * 10 9 6 20 20 S 1.69979 * 111.95320 * 0.02562 * 19 10 9 21 21 C 1.39291 * 119.31962 * 359.97438 * 9 6 5 22 22 H 1.07996 * 119.99750 * 359.94989 * 4 3 2 23 23 H 1.07991 * 119.75660 * 180.22919 * 5 4 3 24 24 H 1.08997 * 109.46591 * 120.01931 * 7 6 5 25 25 H 1.08996 * 109.47099 * 240.02603 * 7 6 5 26 26 H 0.96707 * 113.99490 * 179.97438 * 8 7 6 27 27 H 0.96999 * 119.99986 * 180.02562 * 14 13 11 28 28 H 1.08002 * 124.02364 * 180.02562 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2639 0.5473 1.0750 5 6 4.6456 0.5432 1.0778 6 6 5.3447 0.0049 0.0205 7 6 6.8515 0.0096 0.0429 8 8 7.3080 0.6191 1.2522 9 6 4.6671 -0.5484 -1.0792 10 6 5.2091 -1.1654 -2.2947 11 6 6.5881 -1.2986 -2.5450 12 1 7.2838 -1.3531 -1.7206 13 6 7.0569 -1.3600 -3.8601 14 7 6.2457 -1.1055 -4.8574 15 14 8.8396 -1.8050 -4.1964 16 1 9.1239 -3.1565 -3.6506 17 1 9.0827 -1.8020 -5.6614 18 1 9.7294 -0.8108 -3.5445 19 6 4.2461 -1.5977 -3.1587 20 16 2.6810 -1.2921 -2.5704 21 6 3.2743 -0.5490 -1.0922 22 1 2.7237 0.9715 1.9084 23 1 5.1812 0.9649 1.9154 24 1 7.2187 -1.0154 -0.0085 25 1 7.2258 0.5731 -0.8118 26 1 8.2708 0.6562 1.3348 27 1 6.5710 -1.1485 -5.7703 28 1 4.4535 -2.0770 -4.1040 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396215579.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:35 Heat of formation + Delta-G solvation = -6.568472 kcal Electronic energy + Delta-G solvation = -16124.849122 eV Core-core repulsion = 13424.026303 eV Total energy + Delta-G solvation = -2700.822819 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.70778 -37.98405 -37.37499 -36.52211 -34.13307 -32.68403 -30.14522 -28.62350 -26.66045 -24.23402 -23.16769 -21.64981 -19.98233 -18.71633 -17.77002 -17.32393 -16.84604 -16.26140 -15.86344 -15.62337 -15.46315 -15.05178 -14.69434 -14.38660 -13.84494 -13.78895 -13.44042 -13.16301 -13.01073 -12.78686 -12.67379 -12.39279 -11.95996 -11.91153 -11.58363 -11.29197 -11.05481 -10.90256 -9.97136 -9.21785 -8.59275 -8.47828 -6.27954 -0.29418 0.23190 0.98172 1.32205 1.44211 1.54022 1.56782 1.71448 1.89782 2.15918 2.26834 2.83943 2.91461 3.34637 3.40017 4.00832 4.06424 4.32162 4.52458 4.54717 4.70833 4.85208 5.00389 5.16827 5.28660 5.31996 5.60096 5.66804 5.94847 6.00440 6.40577 6.51643 6.84286 6.96767 7.03213 8.44653 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.020479 B = 0.008445 C = 0.006066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.954635 B = 3314.909671 C = 4614.496203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C 0.280 3.720 3 C -0.036 4.036 4 C -0.037 4.037 5 C -0.119 4.119 6 C -0.020 4.020 7 C 0.123 3.877 8 O -0.577 6.577 9 C -0.089 4.089 10 C 0.068 3.932 11 C -0.464 4.464 12 H 0.101 0.899 13 C 0.027 3.973 14 N -0.835 5.835 15 Si 0.980 3.020 16 H -0.261 1.261 17 H -0.281 1.281 18 H -0.249 1.249 19 C -0.385 4.385 20 S 0.056 5.944 21 C -0.115 4.115 22 H 0.171 0.829 23 H 0.166 0.834 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.401 0.599 27 H 0.281 0.719 28 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.293 2.619 9.107 10.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.134 5.134 2 C -0.034 4.034 3 C -0.047 4.047 4 C -0.059 4.059 5 C -0.140 4.140 6 C -0.022 4.022 7 C 0.046 3.954 8 O -0.386 6.386 9 C -0.099 4.099 10 C 0.059 3.941 11 C -0.496 4.496 12 H 0.119 0.881 13 C -0.187 4.187 14 N -0.462 5.462 15 Si 0.801 3.199 16 H -0.185 1.185 17 H -0.206 1.206 18 H -0.173 1.173 19 C -0.521 4.521 20 S 0.320 5.680 21 C -0.234 4.234 22 H 0.189 0.811 23 H 0.184 0.816 24 H 0.088 0.912 25 H 0.084 0.916 26 H 0.252 0.748 27 H 0.092 0.908 28 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.514 2.345 8.237 8.697 hybrid contribution 2.837 -0.232 -0.791 2.954 sum 4.350 2.113 7.447 8.879 Atomic orbital electron populations 1.81150 1.12479 1.10696 1.09067 1.25763 0.92619 0.92445 0.92558 1.15408 0.83325 1.08952 0.96988 1.21353 0.94264 0.94740 0.95568 1.20871 0.92937 1.01205 0.99017 1.19992 0.95842 0.94494 0.91911 1.20971 0.89908 0.97642 0.86900 1.86298 1.29172 1.83157 1.39999 1.19469 0.91441 1.02216 0.96782 1.17664 0.94982 0.92380 0.89070 1.19545 0.91675 1.44731 0.93637 0.88099 1.26732 1.04084 0.92325 0.95539 1.69970 1.38991 1.36421 1.00804 0.85261 0.76840 0.80095 0.77684 1.18512 1.20645 1.17282 1.24139 0.93629 1.24428 1.09866 1.81923 1.10787 1.63493 1.11812 1.22735 0.96918 1.04966 0.98748 0.81114 0.81650 0.91172 0.91573 0.74813 0.90837 0.84829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -17.08 18.54 19.00 0.35 -16.73 15 2 C 0.28 9.92 15.05 88.33 1.33 11.25 15 3 C -0.04 -1.27 5.77 -21.06 -0.12 -1.39 15 4 C -0.04 -1.02 9.73 22.50 0.22 -0.80 15 5 C -0.12 -3.40 9.33 22.13 0.21 -3.20 15 6 C -0.02 -0.70 5.93 -19.43 -0.12 -0.81 15 7 C 0.12 3.72 5.61 71.24 0.40 4.12 15 8 O -0.58 -13.34 12.09 -148.98 -1.80 -15.14 15 9 C -0.09 -3.87 5.98 -20.26 -0.12 -3.99 15 10 C 0.07 3.38 5.65 -20.87 -0.12 3.27 15 11 C -0.46 -22.07 8.02 23.26 0.19 -21.89 15 12 H 0.10 4.24 4.89 -2.91 -0.01 4.22 15 13 C 0.03 1.25 5.36 85.17 0.46 1.71 15 14 N -0.83 -42.75 10.97 21.80 0.24 -42.51 15 15 Si 0.98 35.31 29.57 68.60 2.03 37.34 15 16 H -0.26 -9.17 7.11 99.48 0.71 -8.46 15 17 H -0.28 -10.16 7.11 99.48 0.71 -9.45 15 18 H -0.25 -8.24 7.11 99.48 0.71 -7.53 15 19 C -0.38 -19.96 9.47 67.39 0.64 -19.32 15 20 S 0.06 2.53 22.64 -56.49 -1.28 1.25 15 21 C -0.12 -4.85 6.31 23.25 0.15 -4.70 15 22 H 0.17 3.25 8.06 -2.91 -0.02 3.22 15 23 H 0.17 3.87 6.94 -2.92 -0.02 3.85 15 24 H 0.07 2.14 6.65 -2.39 -0.02 2.12 15 25 H 0.07 2.15 7.53 -2.39 -0.02 2.14 15 26 H 0.40 5.27 9.12 -74.05 -0.68 4.60 15 27 H 0.28 13.34 8.30 -92.71 -0.77 12.57 15 28 H 0.13 7.52 6.50 -2.91 -0.02 7.50 15 Total: -1.00 -59.99 265.32 3.21 -56.77 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: 0.57 Total: 14.78 kcal Atomic # 6 Polarization: -38.86 SS G_CDS: 3.11 Total: -35.76 kcal Atomic # 7 Polarization: -59.83 SS G_CDS: 0.59 Total: -59.24 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: -1.80 Total: -15.14 kcal Atomic # 14 Polarization: 35.31 SS G_CDS: 2.03 Total: 37.34 kcal Atomic # 16 Polarization: 2.53 SS G_CDS: -1.28 Total: 1.25 kcal Total: -59.99 3.21 -56.77 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396215579.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.206 kcal (2) G-P(sol) polarization free energy of solvation -59.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds