Wall clock time and date at job start Mon Mar 30 2020 06:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35670 * 116.99804 * 2 1 4 4 C 1.38413 * 119.72791 * 359.97438 * 3 2 1 5 5 C 1.37895 * 120.41055 * 180.02562 * 4 3 2 6 6 C 1.39392 * 120.07668 * 0.27670 * 5 4 3 7 7 C 1.43196 * 119.93109 * 179.72379 * 6 5 4 8 8 N 6.70278 * 116.50536 * 359.82580 * 2 1 3 9 9 C 1.41354 * 120.12608 * 359.45152 * 6 5 4 10 10 S 1.75770 * 130.21725 * 180.21502 * 9 6 5 11 11 C 1.69989 * 93.21150 * 180.30590 * 10 9 6 12 12 C 1.36444 * 111.90390 * 359.97438 * 11 10 9 13 13 C 1.40806 * 123.29551 * 180.02562 * 12 11 10 14 14 H 1.07997 * 120.00183 * 156.66220 * 13 12 11 15 15 C 1.39713 * 119.99823 * 336.65705 * 13 12 11 16 16 N 1.31068 * 120.00280 * 348.92659 * 15 13 12 17 17 Si 1.86800 * 119.99705 * 168.92805 * 15 13 12 18 18 H 1.48503 * 109.47357 * 359.97438 * 17 15 13 19 19 H 1.48506 * 109.47220 * 120.00158 * 17 15 13 20 20 H 1.48503 * 109.47026 * 239.99744 * 17 15 13 21 21 C 1.39104 * 119.55334 * 0.54526 * 9 6 5 22 22 H 1.09001 * 109.47123 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47098 * 299.99909 * 1 2 3 24 24 H 1.09004 * 109.47159 * 59.99919 * 1 2 3 25 25 H 1.08002 * 119.78977 * 0.02562 * 4 3 2 26 26 H 1.08002 * 119.95795 * 180.02562 * 5 4 3 27 27 H 1.08003 * 124.04506 * 179.97438 * 11 10 9 28 28 H 0.97000 * 120.00302 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 1.2855 2.3661 -0.0005 5 6 1.8968 3.6021 -0.0011 6 6 3.2877 3.6936 -0.0069 7 6 3.9193 4.9787 -0.0134 8 7 4.4204 5.9982 -0.0182 9 6 4.0759 2.5202 -0.0006 10 16 5.8229 2.3264 -0.0004 11 6 5.7305 0.6290 0.0003 12 6 4.4387 0.1896 0.0011 13 6 4.0860 -1.1735 0.0023 14 1 3.1194 -1.4809 0.3734 15 6 4.9864 -2.1285 -0.4765 16 7 6.0617 -1.7494 -1.1229 17 14 4.6575 -3.9458 -0.1956 18 1 3.3866 -4.1086 0.5551 19 1 4.5517 -4.6379 -1.5052 20 1 5.7732 -4.5354 0.5872 21 6 3.4540 1.2759 0.0000 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 0.2075 2.3004 -0.0005 26 1 1.2972 4.5004 -0.0011 27 1 6.5912 -0.0234 0.0003 28 1 6.6866 -2.4124 -1.4557 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396215772.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:56 Heat of formation + Delta-G solvation = 9.232757 kcal Electronic energy + Delta-G solvation = -16175.272068 eV Core-core repulsion = 13475.134442 eV Total energy + Delta-G solvation = -2700.137627 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.13611 -38.82742 -37.58545 -36.43598 -34.14109 -31.35010 -30.16614 -28.54595 -27.40653 -24.19989 -24.03962 -21.61375 -19.97764 -19.08616 -18.29361 -17.31105 -16.76320 -16.53644 -16.35662 -15.51996 -15.12707 -15.03475 -14.64443 -14.55909 -13.85513 -13.66942 -13.38478 -13.16113 -13.09216 -12.73771 -12.68425 -12.54788 -12.23016 -11.93386 -11.74942 -11.48951 -11.21935 -10.97532 -9.72303 -9.23164 -8.53450 -8.37119 -6.23804 -0.14891 0.19693 0.97837 1.28128 1.41316 1.56386 1.64667 1.73084 1.89983 2.19702 2.27690 2.53107 2.85870 3.05796 3.41190 3.88377 4.09231 4.29759 4.48516 4.57236 4.57888 4.80470 4.90636 5.07172 5.23540 5.30077 5.35170 5.62402 5.77231 6.05180 6.49805 6.55182 6.64747 6.90815 7.01374 8.45519 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.021041 B = 0.008449 C = 0.006110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.424499 B = 3313.056570 C = 4581.375100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.318 6.318 3 C 0.204 3.796 4 C -0.229 4.229 5 C 0.008 3.992 6 C -0.079 4.079 7 C 0.285 3.715 8 N -0.467 5.467 9 C -0.082 4.082 10 S 0.071 5.929 11 C -0.403 4.403 12 C 0.075 3.925 13 C -0.447 4.447 14 H 0.090 0.910 15 C 0.022 3.978 16 N -0.834 5.834 17 Si 0.984 3.016 18 H -0.252 1.252 19 H -0.269 1.269 20 H -0.272 1.272 21 C -0.136 4.136 22 H 0.110 0.890 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.182 0.818 26 H 0.179 0.821 27 H 0.136 0.864 28 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.909 1.921 1.725 13.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.229 6.229 3 C 0.154 3.846 4 C -0.251 4.251 5 C -0.014 4.014 6 C -0.090 4.090 7 C -0.028 4.028 8 N -0.144 5.144 9 C -0.201 4.201 10 S 0.336 5.664 11 C -0.539 4.539 12 C 0.066 3.934 13 C -0.480 4.480 14 H 0.108 0.892 15 C -0.190 4.190 16 N -0.462 5.462 17 Si 0.805 3.195 18 H -0.175 1.175 19 H -0.194 1.194 20 H -0.197 1.197 21 C -0.147 4.147 22 H 0.129 0.871 23 H 0.096 0.904 24 H 0.094 0.906 25 H 0.199 0.801 26 H 0.196 0.804 27 H 0.154 0.846 28 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.542 4.066 1.595 11.411 hybrid contribution -0.700 -2.354 -0.125 2.459 sum -11.242 1.712 1.470 11.466 Atomic orbital electron populations 1.23519 0.76305 1.05598 1.03140 1.86257 1.23587 1.26728 1.86371 1.19294 0.89431 0.85799 0.90106 1.21178 1.01640 0.89768 1.12519 1.21109 0.90038 0.99236 0.91003 1.15311 0.93118 0.82831 1.17738 1.25692 0.92672 0.92423 0.92056 1.81152 1.08494 1.12550 1.12205 1.22573 0.98091 0.94987 1.04436 1.81826 1.00109 1.05075 1.79421 1.24147 1.01251 0.95098 1.33387 1.17644 0.89177 0.93194 0.93353 1.19447 1.02137 0.90402 1.35983 0.89237 1.26754 0.93993 1.05938 0.92344 1.69985 1.11098 1.37485 1.27638 0.85118 0.79535 0.75972 0.78845 1.17506 1.19441 1.19721 1.19037 0.92407 0.92762 1.10464 0.87122 0.90373 0.90621 0.80095 0.80412 0.84614 0.90878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.80 113.37 1.11 1.27 15 2 O -0.32 -10.92 8.39 -89.86 -0.75 -11.68 15 3 C 0.20 7.31 6.75 23.01 0.16 7.46 15 4 C -0.23 -5.73 8.98 22.23 0.20 -5.53 15 5 C 0.01 0.21 9.72 22.47 0.22 0.43 15 6 C -0.08 -2.69 5.77 -20.99 -0.12 -2.81 15 7 C 0.28 9.92 15.04 88.33 1.33 11.25 15 8 N -0.47 -17.26 18.54 19.00 0.35 -16.91 15 9 C -0.08 -3.49 6.31 23.24 0.15 -3.34 15 10 S 0.07 3.29 22.64 -56.49 -1.28 2.01 15 11 C -0.40 -21.87 9.50 67.40 0.64 -21.23 15 12 C 0.07 4.02 5.68 -20.88 -0.12 3.90 15 13 C -0.45 -23.82 8.69 23.25 0.20 -23.62 15 14 H 0.09 4.56 6.37 -2.91 -0.02 4.55 15 15 C 0.02 1.13 5.35 85.16 0.46 1.59 15 16 N -0.83 -45.14 10.84 21.80 0.24 -44.90 15 17 Si 0.98 38.82 29.57 68.60 2.03 40.85 15 18 H -0.25 -9.44 7.11 99.48 0.71 -8.74 15 19 H -0.27 -10.24 7.11 99.48 0.71 -9.53 15 20 H -0.27 -10.51 7.11 99.48 0.71 -9.80 15 21 C -0.14 -6.19 6.03 -20.19 -0.12 -6.32 15 22 H 0.11 1.83 8.14 -2.39 -0.02 1.81 15 23 H 0.08 1.14 7.64 -2.39 -0.02 1.13 15 24 H 0.08 1.15 7.64 -2.38 -0.02 1.13 15 25 H 0.18 2.76 6.21 -2.91 -0.02 2.75 15 26 H 0.18 2.78 8.06 -2.91 -0.02 2.75 15 27 H 0.14 7.98 6.33 -2.91 -0.02 7.96 15 28 H 0.28 13.88 8.30 -92.71 -0.77 13.11 15 Total: -1.00 -66.38 267.63 5.90 -60.48 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: 1.22 Total: 7.11 kcal Atomic # 6 Polarization: -41.05 SS G_CDS: 4.10 Total: -36.96 kcal Atomic # 7 Polarization: -62.40 SS G_CDS: 0.59 Total: -61.81 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: -0.75 Total: -11.68 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 2.03 Total: 40.85 kcal Atomic # 16 Polarization: 3.29 SS G_CDS: -1.28 Total: 2.01 kcal Total: -66.38 5.90 -60.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396215772.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.711 kcal (2) G-P(sol) polarization free energy of solvation -66.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds