Wall clock time and date at job start Mon Mar 30 2020 06:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43191 * 179.97438 * 2 1 4 4 C 1.33797 * 124.69381 * 258.39869 * 3 2 1 5 5 C 1.40532 * 115.54589 * 180.02562 * 4 3 2 6 6 C 1.39742 * 112.57397 * 359.97438 * 5 4 3 7 7 S 1.75483 * 124.69221 * 78.41744 * 3 2 1 8 8 C 1.42178 * 119.78833 * 180.02562 * 6 5 4 9 9 C 1.40896 * 120.11495 * 179.97438 * 8 6 5 10 10 H 1.08002 * 119.99725 * 334.46596 * 9 8 6 11 11 C 1.39952 * 120.00508 * 154.47499 * 9 8 6 12 12 N 1.30858 * 119.99376 * 342.59373 * 11 9 8 13 13 Si 1.86797 * 120.00604 * 162.59039 * 11 9 8 14 14 H 1.48507 * 109.46991 * 0.02562 * 13 11 9 15 15 H 1.48493 * 109.47307 * 119.99856 * 13 11 9 16 16 H 1.48505 * 109.47270 * 240.00264 * 13 11 9 17 17 C 1.40380 * 119.76959 * 359.97438 * 8 6 5 18 18 C 1.37973 * 119.88044 * 0.02562 * 17 8 6 19 19 C 1.37648 * 120.86345 * 359.97438 * 18 17 8 20 20 C 1.50694 * 119.52586 * 179.97438 * 19 18 17 21 21 O 1.42903 * 109.47374 * 359.97438 * 20 19 18 22 22 H 1.08008 * 122.22240 * 0.02562 * 4 3 2 23 23 H 0.97000 * 119.99610 * 179.97438 * 12 11 9 24 24 H 1.07993 * 120.06281 * 179.97438 * 17 8 6 25 25 H 1.07997 * 119.56712 * 179.71915 * 18 17 8 26 26 H 1.08995 * 109.47386 * 119.99549 * 20 19 18 27 27 H 1.09001 * 109.47168 * 239.99566 * 20 19 18 28 28 H 0.96701 * 114.00214 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.3294 0.2222 1.0776 5 6 4.7169 0.1785 0.8586 6 6 5.0415 -0.0949 -0.4728 7 16 3.5669 -0.2886 -1.4135 8 6 6.4057 -0.1748 -0.8651 9 6 6.7408 -0.4505 -2.2056 10 1 6.0496 -0.9920 -2.8346 11 6 7.9692 -0.0229 -2.7221 12 7 8.6525 0.9047 -2.1016 13 14 8.6335 -0.7763 -4.2971 14 1 7.6776 -1.7956 -4.7998 15 1 8.8062 0.2864 -5.3197 16 1 9.9444 -1.4185 -4.0241 17 6 7.4177 0.0219 0.0877 18 6 7.0840 0.2911 1.3991 19 6 5.7668 0.3709 1.7906 20 6 5.4366 0.6660 3.2310 21 8 6.6468 0.8183 3.9755 22 1 2.9058 0.4214 2.0510 23 1 9.5041 1.2008 -2.4594 24 1 8.4554 -0.0382 -0.2050 25 1 7.8666 0.4370 2.1289 26 1 4.8555 1.5862 3.2894 27 1 4.8559 -0.1575 3.6467 28 1 6.5101 1.0108 4.9133 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396215774.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:46 Heat of formation + Delta-G solvation = -6.459036 kcal Electronic energy + Delta-G solvation = -15835.617127 eV Core-core repulsion = 13134.799053 eV Total energy + Delta-G solvation = -2700.818074 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.32502 -38.09276 -37.47023 -36.52969 -34.79156 -32.25818 -30.40759 -28.57930 -25.70484 -24.82065 -22.88231 -21.77556 -19.59283 -18.85921 -18.10145 -17.26732 -16.78612 -16.29956 -15.70703 -15.63373 -15.20752 -15.13932 -14.69389 -14.36946 -13.99832 -13.90312 -13.56065 -13.41273 -12.91755 -12.79315 -12.73219 -12.17058 -11.93246 -11.67553 -11.56922 -11.23443 -11.20764 -10.80406 -9.99049 -9.15679 -8.75343 -8.49828 -6.33305 -0.45355 0.39659 0.83230 1.26007 1.27230 1.40779 1.53247 1.55105 1.86306 2.18760 2.24710 2.69432 2.80272 3.53515 3.64615 4.25559 4.34392 4.50989 4.62364 4.72044 4.82262 4.82544 5.02919 5.22444 5.33540 5.49169 5.69743 5.92248 6.07610 6.19570 6.29559 6.57799 6.78720 6.84842 7.15493 8.24996 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.016241 B = 0.008265 C = 0.005572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.611324 B = 3386.775571 C = 5023.729887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.311 3.689 3 C -0.148 4.148 4 C -0.030 4.030 5 C -0.062 4.062 6 C -0.215 4.215 7 S 0.126 5.874 8 C 0.114 3.886 9 C -0.483 4.483 10 H 0.079 0.921 11 C 0.041 3.959 12 N -0.809 5.809 13 Si 0.977 3.023 14 H -0.258 1.258 15 H -0.266 1.266 16 H -0.262 1.262 17 C -0.186 4.186 18 C -0.070 4.070 19 C -0.180 4.180 20 C 0.141 3.859 21 O -0.588 6.588 22 H 0.174 0.826 23 H 0.292 0.708 24 H 0.109 0.891 25 H 0.114 0.886 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.582 -0.667 5.686 6.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.121 5.121 2 C -0.004 4.004 3 C -0.267 4.267 4 C -0.068 4.068 5 C -0.069 4.069 6 C -0.331 4.331 7 S 0.392 5.608 8 C 0.109 3.891 9 C -0.512 4.512 10 H 0.097 0.903 11 C -0.176 4.176 12 N -0.434 5.434 13 Si 0.797 3.203 14 H -0.181 1.181 15 H -0.191 1.191 16 H -0.187 1.187 17 C -0.210 4.210 18 C -0.089 4.089 19 C -0.184 4.184 20 C 0.064 3.936 21 O -0.396 6.396 22 H 0.191 0.809 23 H 0.103 0.897 24 H 0.127 0.873 25 H 0.132 0.868 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -4.272 -0.956 3.504 5.607 hybrid contribution 1.174 0.270 1.077 1.616 sum -3.099 -0.686 4.581 5.573 Atomic orbital electron populations 1.81235 1.11565 1.11057 1.08227 1.24295 0.90772 0.92299 0.93004 1.19299 0.88345 1.18647 1.00423 1.20307 0.90823 0.96427 0.99203 1.17704 0.92516 1.04163 0.92497 1.23138 0.97229 1.15907 0.96859 1.83740 0.93920 1.75197 1.07912 1.17238 0.88172 0.89733 0.93999 1.19741 1.02672 1.32472 0.96303 0.90282 1.26679 0.95783 0.92871 1.02261 1.69865 1.13243 1.20567 1.39699 0.85221 0.78937 0.79225 0.76874 1.18113 1.19065 1.18695 1.21189 0.98686 1.08977 0.92189 1.20504 0.95973 0.97357 0.95089 1.19298 0.91616 1.12983 0.94546 1.20615 0.85747 0.99687 0.87542 1.86453 1.32150 1.94788 1.26199 0.80891 0.89661 0.87342 0.86831 0.92077 0.91721 0.75466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -14.69 18.54 19.00 0.35 -14.34 15 2 C 0.31 9.80 15.76 88.33 1.39 11.19 15 3 C -0.15 -4.86 6.18 22.50 0.14 -4.72 15 4 C -0.03 -0.94 9.57 21.82 0.21 -0.73 15 5 C -0.06 -2.43 5.82 -21.50 -0.13 -2.56 15 6 C -0.21 -9.60 6.38 23.61 0.15 -9.45 15 7 S 0.13 4.76 22.83 -56.49 -1.29 3.47 15 8 C 0.11 5.73 5.58 -21.13 -0.12 5.61 15 9 C -0.48 -24.20 8.82 23.34 0.21 -23.99 15 10 H 0.08 3.85 7.76 -2.91 -0.02 3.83 15 11 C 0.04 1.95 5.13 85.25 0.44 2.39 15 12 N -0.81 -39.66 10.98 21.83 0.24 -39.42 15 13 Si 0.98 35.97 29.59 68.60 2.03 38.00 15 14 H -0.26 -9.37 7.11 99.48 0.71 -8.66 15 15 H -0.27 -9.45 7.11 99.48 0.71 -8.74 15 16 H -0.26 -9.29 7.11 99.48 0.71 -8.59 15 17 C -0.19 -9.24 8.67 22.73 0.20 -9.04 15 18 C -0.07 -3.09 9.30 22.07 0.21 -2.88 15 19 C -0.18 -6.97 5.97 -19.15 -0.11 -7.08 15 20 C 0.14 3.97 6.87 71.23 0.49 4.46 15 21 O -0.59 -16.09 12.07 -148.98 -1.80 -17.89 15 22 H 0.17 4.02 7.90 -2.91 -0.02 4.00 15 23 H 0.29 12.88 8.30 -92.71 -0.77 12.11 15 24 H 0.11 5.63 6.19 -2.91 -0.02 5.61 15 25 H 0.11 4.78 6.91 -2.91 -0.02 4.76 15 26 H 0.06 1.48 8.14 -2.39 -0.02 1.47 15 27 H 0.06 1.53 8.14 -2.39 -0.02 1.51 15 28 H 0.40 6.03 9.12 -74.06 -0.68 5.36 15 Total: -1.00 -57.47 271.85 3.16 -54.32 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: 0.55 Total: 12.65 kcal Atomic # 6 Polarization: -39.86 SS G_CDS: 3.07 Total: -36.79 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: 0.59 Total: -53.75 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: -1.80 Total: -17.89 kcal Atomic # 14 Polarization: 35.97 SS G_CDS: 2.03 Total: 38.00 kcal Atomic # 16 Polarization: 4.76 SS G_CDS: -1.29 Total: 3.47 kcal Total: -57.47 3.16 -54.32 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396215774.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.858 kcal (2) G-P(sol) polarization free energy of solvation -57.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds