Wall clock time and date at job start Mon Mar 30 2020 06:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35485 * 117.00076 * 2 1 4 4 C 1.41524 * 120.19904 * 269.97392 * 3 2 1 5 5 C 1.41156 * 119.99429 * 0.04889 * 4 3 2 6 6 H 1.07997 * 120.00087 * 334.26670 * 5 4 3 7 7 C 1.39858 * 119.99668 * 154.27113 * 5 4 3 8 8 N 1.30924 * 119.99846 * 342.47237 * 7 5 4 9 9 Si 1.86797 * 120.00170 * 162.48062 * 7 5 4 10 10 H 1.48498 * 109.47529 * 89.99296 * 9 7 5 11 11 H 1.48497 * 109.47088 * 209.99883 * 9 7 5 12 12 H 1.48508 * 109.46758 * 329.99640 * 9 7 5 13 13 C 1.39826 * 120.00385 * 180.02562 * 4 3 2 14 14 C 1.40516 * 120.61674 * 0.02656 * 13 4 3 15 15 C 1.45720 * 128.94021 * 180.02562 * 14 13 4 16 16 C 1.31595 * 114.91710 * 179.97438 * 15 14 13 17 17 S 1.75254 * 111.51085 * 0.02562 * 16 15 14 18 18 C 1.40024 * 119.35157 * 359.97438 * 14 13 4 19 19 C 1.39042 * 120.19822 * 90.00147 * 3 2 1 20 20 C 1.43199 * 119.87180 * 359.97438 * 19 3 2 21 21 N 3.51332 * 95.72010 * 78.63039 * 2 1 3 22 22 H 1.08996 * 109.47124 * 300.00464 * 1 2 3 23 23 H 1.09004 * 109.46879 * 60.00052 * 1 2 3 24 24 H 1.08999 * 109.46964 * 179.97438 * 1 2 3 25 25 H 0.96997 * 120.00369 * 180.02562 * 8 7 5 26 26 H 1.08004 * 119.69007 * 179.97438 * 13 4 3 27 27 H 1.07993 * 122.54188 * 359.93793 * 15 14 13 28 28 H 1.08000 * 124.24560 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2072 0.0000 4 6 2.3678 1.8412 -1.2232 5 6 2.0489 1.2162 -2.4480 6 1 1.9561 0.1414 -2.4977 7 6 1.8530 1.9890 -3.5971 8 7 1.6236 3.2736 -3.4908 9 14 1.9185 1.1884 -5.2835 10 1 0.5601 0.7250 -5.6647 11 1 2.4031 2.1754 -6.2816 12 1 2.8445 0.0280 -5.2449 13 6 3.0031 3.0868 -1.2184 14 6 3.3267 3.7205 -0.0067 15 6 3.9810 5.0045 0.2092 16 6 4.1497 5.3355 1.4716 17 16 3.5226 4.1032 2.5484 18 6 3.0061 3.0927 1.2032 19 6 2.3617 1.8303 1.2017 20 6 2.0369 1.1939 2.4427 21 7 1.7792 0.6892 3.4272 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.4874 3.8096 -4.2877 26 1 3.2482 3.5659 -2.1548 27 1 4.3036 5.6363 -0.6051 28 1 4.6162 6.2516 1.8026 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396216074.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:40 Heat of formation + Delta-G solvation = 13.921978 kcal Electronic energy + Delta-G solvation = -16290.752556 eV Core-core repulsion = 13590.818269 eV Total energy + Delta-G solvation = -2699.934287 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.75345 -38.56000 -37.60472 -36.29163 -34.54727 -31.92985 -30.05439 -28.13592 -26.93767 -24.66896 -23.57307 -21.65905 -20.09284 -18.74295 -18.12033 -17.70830 -16.96753 -16.56206 -16.29945 -15.29877 -15.15883 -14.87610 -14.55620 -14.26265 -14.05407 -13.86374 -13.72978 -13.57825 -13.10717 -12.84218 -12.68296 -12.45188 -12.08122 -11.87163 -11.61777 -11.50268 -10.97096 -10.74080 -10.18421 -9.20103 -8.71120 -8.58817 -6.35133 -0.17046 0.26412 0.83160 1.24172 1.27819 1.46357 1.56490 1.58960 1.63039 2.15243 2.23320 2.60618 2.96913 2.99135 3.53299 4.03521 4.38806 4.49520 4.56244 4.62476 4.72948 4.82842 4.89995 5.05378 5.22360 5.23617 5.28005 5.67667 5.82703 5.95166 6.29466 6.40135 6.61979 6.77304 6.91961 8.24552 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.020400 B = 0.008509 C = 0.006205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.222035 B = 3289.844792 C = 4511.171783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.340 6.340 3 C 0.063 3.937 4 C 0.067 3.933 5 C -0.460 4.460 6 H 0.084 0.916 7 C 0.044 3.956 8 N -0.807 5.807 9 Si 0.979 3.021 10 H -0.264 1.264 11 H -0.264 1.264 12 H -0.261 1.261 13 C -0.118 4.118 14 C -0.064 4.064 15 C -0.121 4.121 16 C -0.176 4.176 17 S 0.024 5.976 18 C -0.201 4.201 19 C -0.020 4.020 20 C 0.282 3.718 21 N -0.459 5.459 22 H 0.030 0.970 23 H 0.047 0.953 24 H 0.112 0.888 25 H 0.296 0.704 26 H 0.128 0.872 27 H 0.162 0.838 28 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.718 3.716 -0.603 4.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.257 6.257 3 C 0.013 3.987 4 C 0.062 3.938 5 C -0.489 4.489 6 H 0.102 0.898 7 C -0.174 4.174 8 N -0.432 5.432 9 Si 0.800 3.200 10 H -0.189 1.189 11 H -0.188 1.188 12 H -0.185 1.185 13 C -0.140 4.140 14 C -0.071 4.071 15 C -0.151 4.151 16 C -0.308 4.308 17 S 0.283 5.717 18 C -0.317 4.317 19 C -0.029 4.029 20 C -0.031 4.031 21 N -0.136 5.136 22 H 0.049 0.951 23 H 0.065 0.935 24 H 0.131 0.869 25 H 0.107 0.893 26 H 0.146 0.854 27 H 0.180 0.820 28 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 1.295 2.906 2.352 3.956 hybrid contribution -0.210 0.122 -2.484 2.496 sum 1.085 3.028 -0.133 3.219 Atomic orbital electron populations 1.23023 0.78914 1.03728 0.99984 1.85809 1.20575 1.25123 1.94198 1.18688 1.01050 0.88398 0.90524 1.17748 0.91851 0.92270 0.91881 1.19630 1.41368 0.95558 0.92353 0.89767 1.26653 0.91083 0.95013 1.04669 1.69827 1.31537 1.07887 1.33906 0.85222 0.79688 0.79216 0.75886 1.18867 1.18844 1.18462 1.21209 1.00303 0.96896 0.95630 1.19450 1.00260 0.95039 0.92327 1.21152 1.01021 0.94977 0.97992 1.25132 1.06628 1.03706 0.95371 1.83675 1.64782 1.14359 1.08897 1.21969 1.13893 0.98567 0.97314 1.15490 1.07721 0.93742 0.85927 1.25845 0.92456 0.92281 0.92538 1.81034 1.10914 1.09971 1.11666 0.95114 0.93464 0.86931 0.89336 0.85428 0.82050 0.78344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.37 11.13 113.37 1.26 2.63 15 2 O -0.34 -15.10 9.08 -87.85 -0.80 -15.90 15 3 C 0.06 2.93 5.73 23.27 0.13 3.06 15 4 C 0.07 3.24 5.56 -21.37 -0.12 3.12 15 5 C -0.46 -21.91 8.69 23.38 0.20 -21.71 15 6 H 0.08 4.00 7.65 -2.91 -0.02 3.98 15 7 C 0.04 1.91 5.11 85.22 0.44 2.34 15 8 N -0.81 -36.26 11.00 21.82 0.24 -36.02 15 9 Si 0.98 33.67 29.59 68.60 2.03 35.70 15 10 H -0.26 -8.86 7.11 99.48 0.71 -8.16 15 11 H -0.26 -8.60 7.11 99.48 0.71 -7.90 15 12 H -0.26 -9.04 7.11 99.48 0.71 -8.34 15 13 C -0.12 -5.43 8.71 23.21 0.20 -5.23 15 14 C -0.06 -2.69 6.02 -20.36 -0.12 -2.81 15 15 C -0.12 -4.00 10.38 23.60 0.25 -3.75 15 16 C -0.18 -5.06 11.00 67.22 0.74 -4.32 15 17 S 0.02 0.84 22.92 -56.49 -1.29 -0.45 15 18 C -0.20 -8.51 6.36 23.57 0.15 -8.36 15 19 C -0.02 -0.89 5.78 -20.98 -0.12 -1.01 15 20 C 0.28 12.35 14.55 88.33 1.29 13.64 15 21 N -0.46 -20.01 18.54 19.00 0.35 -19.66 15 22 H 0.03 1.10 8.14 -2.39 -0.02 1.08 15 23 H 0.05 1.77 8.14 -2.38 -0.02 1.75 15 24 H 0.11 3.30 8.14 -2.39 -0.02 3.28 15 25 H 0.30 11.90 8.30 -92.71 -0.77 11.13 15 26 H 0.13 5.95 6.16 -2.91 -0.02 5.93 15 27 H 0.16 4.43 8.06 -2.91 -0.02 4.40 15 28 H 0.20 3.93 8.06 -2.91 -0.02 3.91 15 Total: -1.00 -53.70 274.12 6.03 -47.67 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: 1.21 Total: 11.06 kcal Atomic # 6 Polarization: -26.70 SS G_CDS: 4.29 Total: -22.40 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: 0.59 Total: -55.68 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: -0.80 Total: -15.90 kcal Atomic # 14 Polarization: 33.67 SS G_CDS: 2.03 Total: 35.70 kcal Atomic # 16 Polarization: 0.84 SS G_CDS: -1.29 Total: -0.45 kcal Total: -53.70 6.03 -47.67 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396216074.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.591 kcal (2) G-P(sol) polarization free energy of solvation -53.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds