Wall clock time and date at job start Mon Mar 30 2020 06:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39214 * 119.80038 * 44.32008 * 3 2 1 5 5 C 1.40998 * 120.79017 * 180.02562 * 4 3 2 6 6 C 1.45554 * 129.02716 * 180.02562 * 5 4 3 7 7 C 1.31791 * 114.89289 * 179.97438 * 6 5 4 8 8 S 1.75281 * 111.39119 * 0.02562 * 7 6 5 9 9 C 1.39598 * 119.17136 * 359.97438 * 5 4 3 10 10 C 1.42314 * 119.91428 * 0.02562 * 9 5 4 11 11 C 1.41004 * 120.00884 * 179.97438 * 10 9 5 12 12 H 1.07993 * 119.99921 * 141.09963 * 11 10 9 13 13 C 1.39909 * 119.99869 * 321.10810 * 11 10 9 14 14 N 1.30873 * 119.99552 * 338.34694 * 13 11 10 15 15 Si 1.86794 * 120.00063 * 158.35249 * 13 11 10 16 16 H 1.48503 * 109.47138 * 59.99536 * 15 13 11 17 17 H 1.48502 * 109.47285 * 179.97438 * 15 13 11 18 18 H 1.48493 * 109.47080 * 299.99803 * 15 13 11 19 19 C 1.39374 * 119.79686 * 224.33582 * 3 2 1 20 20 C 1.50704 * 120.13179 * 0.02562 * 19 3 2 21 21 O 1.42899 * 109.46911 * 269.97291 * 20 19 3 22 22 H 1.08002 * 119.60633 * 0.04200 * 4 3 2 23 23 H 1.08002 * 122.55375 * 359.97438 * 6 5 4 24 24 H 1.08003 * 124.30291 * 180.02562 * 7 6 5 25 25 H 0.97005 * 119.99888 * 185.42280 * 14 13 11 26 26 H 1.08999 * 109.47209 * 29.97241 * 20 19 3 27 27 H 1.09005 * 109.47283 * 149.97495 * 20 19 3 28 28 H 0.96695 * 114.00244 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2603 -0.8633 -0.8440 5 6 4.6700 -0.8805 -0.8607 6 6 5.5673 -1.7000 -1.6619 7 6 6.8506 -1.4851 -1.4524 8 16 7.1014 -0.2449 -0.2394 9 6 5.3710 -0.0167 -0.0174 10 6 4.6607 0.8654 0.8444 11 6 5.3668 1.7385 1.6973 12 1 5.0071 2.7439 1.8585 13 6 6.5333 1.3021 2.3347 14 7 6.7495 0.0218 2.4987 15 14 7.7820 2.5468 2.9517 16 1 7.1398 3.4390 3.9502 17 1 8.9202 1.8339 3.5852 18 1 8.2783 3.3573 1.8107 19 6 3.2602 0.8660 0.8453 20 6 2.5047 1.7981 1.7571 21 8 2.2655 3.0347 1.0821 22 1 2.7109 -1.5283 -1.4941 23 1 5.2087 -2.4287 -2.3739 24 1 7.6464 -2.0069 -1.9631 25 1 7.5178 -0.2789 3.0089 26 1 1.5526 1.3444 2.0325 27 1 3.0927 1.9828 2.6562 28 1 1.7825 3.6845 1.6108 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396216347.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:16 Heat of formation + Delta-G solvation = -5.513396 kcal Electronic energy + Delta-G solvation = -16376.120117 eV Core-core repulsion = 13675.343049 eV Total energy + Delta-G solvation = -2700.777068 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.30120 -37.84191 -37.39898 -36.20722 -34.93659 -32.08284 -30.79874 -27.69087 -26.47956 -24.44451 -22.79446 -21.55988 -19.62112 -18.25130 -18.09015 -17.68552 -17.10726 -16.60109 -15.74294 -15.20746 -14.90421 -14.77295 -14.40405 -14.25535 -14.01580 -13.74980 -13.64667 -13.36757 -13.11145 -12.85431 -12.64103 -12.30847 -12.12950 -11.69797 -11.37846 -11.30995 -10.80654 -10.72550 -10.05520 -9.11814 -8.78536 -8.05455 -6.44924 0.08693 0.29012 1.16029 1.35820 1.43898 1.51367 1.68377 1.70929 1.75996 2.14785 2.22625 2.75058 3.07619 3.30449 3.88361 4.12240 4.25308 4.44483 4.49995 4.65871 4.79604 4.93544 5.15329 5.25554 5.34008 5.38882 5.58400 5.71899 5.92192 6.02202 6.41194 6.52623 6.70144 6.84922 7.02412 8.26104 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.017257 B = 0.010812 C = 0.007060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.149551 B = 2589.000936 C = 3964.992028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C 0.292 3.708 3 C 0.002 3.998 4 C -0.144 4.144 5 C -0.071 4.071 6 C -0.133 4.133 7 C -0.217 4.217 8 S 0.098 5.902 9 C -0.174 4.174 10 C 0.140 3.860 11 C -0.489 4.489 12 H 0.086 0.914 13 C 0.047 3.953 14 N -0.788 5.788 15 Si 0.955 3.045 16 H -0.259 1.259 17 H -0.265 1.265 18 H -0.262 1.262 19 C -0.172 4.172 20 C 0.146 3.854 21 O -0.583 6.583 22 H 0.135 0.865 23 H 0.162 0.838 24 H 0.188 0.812 25 H 0.296 0.704 26 H 0.035 0.965 27 H 0.059 0.941 28 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.367 -0.612 -1.927 3.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.148 5.148 2 C -0.022 4.022 3 C -0.004 4.004 4 C -0.168 4.168 5 C -0.080 4.080 6 C -0.164 4.164 7 C -0.351 4.351 8 S 0.364 5.636 9 C -0.291 4.291 10 C 0.134 3.866 11 C -0.517 4.517 12 H 0.104 0.896 13 C -0.172 4.172 14 N -0.412 5.412 15 Si 0.777 3.223 16 H -0.184 1.184 17 H -0.189 1.189 18 H -0.186 1.186 19 C -0.180 4.180 20 C 0.069 3.931 21 O -0.390 6.390 22 H 0.153 0.847 23 H 0.180 0.820 24 H 0.205 0.795 25 H 0.107 0.893 26 H 0.053 0.947 27 H 0.077 0.923 28 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 3.501 -0.506 -1.751 3.947 hybrid contribution -0.687 0.064 0.354 0.775 sum 2.814 -0.442 -1.397 3.173 Atomic orbital electron populations 1.81078 1.12453 1.10836 1.10384 1.25934 0.92790 0.91545 0.91889 1.15568 0.82993 1.01075 1.00718 1.20421 0.91543 1.02288 1.02555 1.19345 0.93766 0.97217 0.97682 1.21045 0.91908 1.01686 1.01778 1.25650 1.00815 1.04742 1.03904 1.83803 1.04670 1.38836 1.36309 1.23143 0.96582 1.06231 1.03178 1.16823 0.89949 0.89806 0.89988 1.19523 1.07099 1.00000 1.25092 0.89594 1.26429 0.98481 0.97021 0.95272 1.69773 1.27360 1.16468 1.27604 0.85599 0.77966 0.79391 0.79394 1.18369 1.18881 1.18635 1.19618 0.92778 1.01958 1.03618 1.20533 0.95783 0.83274 0.93552 1.86570 1.80073 1.26542 1.45853 0.84703 0.82036 0.79505 0.89273 0.94707 0.92278 0.76469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -19.26 18.54 19.00 0.35 -18.91 15 2 C 0.29 11.86 13.73 88.33 1.21 13.07 15 3 C 0.00 0.08 5.71 -21.52 -0.12 -0.04 15 4 C -0.14 -5.76 9.78 23.18 0.23 -5.54 15 5 C -0.07 -2.98 6.02 -20.39 -0.12 -3.10 15 6 C -0.13 -4.53 10.39 23.40 0.24 -4.29 15 7 C -0.22 -7.14 11.02 67.06 0.74 -6.40 15 8 S 0.10 4.00 19.87 -56.49 -1.12 2.88 15 9 C -0.17 -8.10 5.76 23.61 0.14 -7.97 15 10 C 0.14 6.87 5.36 -21.15 -0.11 6.75 15 11 C -0.49 -23.67 7.60 23.35 0.18 -23.50 15 12 H 0.09 4.14 7.47 -2.91 -0.02 4.12 15 13 C 0.05 2.14 4.22 85.24 0.36 2.50 15 14 N -0.79 -36.51 10.75 21.82 0.23 -36.28 15 15 Si 0.96 35.11 29.61 68.60 2.03 37.14 15 16 H -0.26 -9.28 7.11 99.48 0.71 -8.57 15 17 H -0.26 -9.19 7.11 99.48 0.71 -8.48 15 18 H -0.26 -9.70 7.11 99.48 0.71 -8.99 15 19 C -0.17 -7.88 5.60 -19.15 -0.11 -7.99 15 20 C 0.15 5.88 6.19 71.24 0.44 6.33 15 21 O -0.58 -22.25 13.64 -148.98 -2.03 -24.28 15 22 H 0.14 4.52 8.06 -2.91 -0.02 4.50 15 23 H 0.16 4.26 8.06 -2.91 -0.02 4.23 15 24 H 0.19 4.58 8.06 -2.91 -0.02 4.56 15 25 H 0.30 12.56 8.31 -92.70 -0.77 11.79 15 26 H 0.03 1.33 7.07 -2.39 -0.02 1.31 15 27 H 0.06 2.40 6.98 -2.38 -0.02 2.38 15 28 H 0.39 10.25 9.12 -74.06 -0.68 9.58 15 Total: -1.00 -56.29 268.22 3.08 -53.21 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 0.55 Total: 16.42 kcal Atomic # 6 Polarization: -33.25 SS G_CDS: 3.07 Total: -30.18 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: 0.59 Total: -55.18 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -2.03 Total: -24.28 kcal Atomic # 14 Polarization: 35.11 SS G_CDS: 2.03 Total: 37.14 kcal Atomic # 16 Polarization: 4.00 SS G_CDS: -1.12 Total: 2.88 kcal Total: -56.29 3.08 -53.21 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396216347.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.697 kcal (2) G-P(sol) polarization free energy of solvation -56.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds