Wall clock time and date at job start Mon Mar 30 2020 06:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 S 1.75163 * 124.63278 * 207.41264 * 3 2 1 5 5 C 1.75867 * 92.83432 * 179.97438 * 4 3 2 6 6 C 1.40051 * 129.59747 * 179.97438 * 5 4 3 7 7 C 1.37514 * 120.48842 * 179.97438 * 6 5 4 8 8 C 1.50701 * 119.93836 * 180.02562 * 7 6 5 9 9 O 1.42900 * 109.46908 * 269.97568 * 8 7 6 10 10 C 1.38698 * 120.12784 * 359.97438 * 7 6 5 11 11 C 1.37323 * 120.25222 * 0.02963 * 10 7 6 12 12 C 1.39289 * 110.80576 * 359.91790 * 5 4 3 13 13 C 1.38650 * 124.63592 * 27.31141 * 3 2 1 14 14 C 1.39671 * 123.34799 * 0.02562 * 13 3 2 15 15 H 1.08000 * 119.99725 * 37.87787 * 14 13 3 16 16 C 1.40432 * 119.99768 * 217.87846 * 14 13 3 17 17 N 1.30608 * 120.00061 * 19.79652 * 16 14 13 18 18 Si 1.86797 * 119.99790 * 199.79192 * 16 14 13 19 19 H 1.48493 * 109.47048 * 60.00458 * 18 16 14 20 20 H 1.48504 * 109.46964 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47185 * 300.00113 * 18 16 14 22 22 H 1.07999 * 119.75999 * 359.93070 * 6 5 4 23 23 H 1.09001 * 109.47192 * 29.97296 * 8 7 6 24 24 H 1.08994 * 109.47424 * 149.97504 * 8 7 6 25 25 H 0.96697 * 113.99887 * 180.02562 * 9 8 7 26 26 H 1.07993 * 119.86979 * 180.02562 * 10 7 6 27 27 H 1.08002 * 119.76637 * 179.69920 * 11 10 7 28 28 H 0.96994 * 119.99967 * 183.37780 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 16 3.5629 1.2805 0.6636 5 6 5.0580 0.4582 0.2376 6 6 6.3851 0.8554 0.4432 7 6 7.4248 0.0560 0.0297 8 6 8.8481 0.4953 0.2578 9 8 9.2987 1.2531 -0.8669 10 6 7.1659 -1.1545 -0.5959 11 6 5.8714 -1.5615 -0.8066 12 6 4.7929 -0.7567 -0.3900 13 6 3.3565 -1.0126 -0.5234 14 6 2.8334 -2.1631 -1.1180 15 1 1.9467 -2.0986 -1.7312 16 6 3.4604 -3.4037 -0.9184 17 7 4.2684 -3.5717 0.0939 18 14 3.1388 -4.8137 -2.1007 19 1 3.5561 -4.4170 -3.4694 20 1 3.9141 -6.0056 -1.6722 21 1 1.6900 -5.1397 -2.0998 22 1 6.5936 1.7970 0.9295 23 1 8.8987 1.1120 1.1552 24 1 9.4834 -0.3814 0.3831 25 1 10.2093 1.5689 -0.7890 26 1 7.9855 -1.7793 -0.9185 27 1 5.6788 -2.5033 -1.2989 28 1 4.7394 -4.4124 0.2043 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396216439.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:06 Heat of formation + Delta-G solvation = -13.187045 kcal Electronic energy + Delta-G solvation = -15985.959645 eV Core-core repulsion = 13284.849823 eV Total energy + Delta-G solvation = -2701.109822 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.42267 -38.06688 -37.18412 -36.28565 -34.51780 -31.67987 -31.27474 -28.43797 -26.79154 -23.77920 -23.38111 -21.68996 -19.94769 -18.26691 -18.13167 -17.56219 -16.88724 -16.28477 -16.11319 -15.42605 -14.83849 -14.72835 -14.65709 -14.39167 -13.93693 -13.82081 -13.52109 -13.47303 -13.24274 -12.93433 -12.66034 -12.27769 -11.99754 -11.77221 -11.47903 -11.28593 -10.96609 -10.82529 -10.21180 -9.20007 -8.99079 -8.43860 -6.63441 -0.15081 0.51640 0.89381 1.12229 1.35008 1.43379 1.47927 1.57961 2.12290 2.43559 2.47139 2.73154 3.18539 3.64350 3.75615 4.05320 4.20627 4.30640 4.43694 4.57087 4.63580 4.76300 4.93795 5.03182 5.18801 5.30701 5.51726 5.67296 5.77860 6.02665 6.15617 6.38872 6.53109 6.98888 7.05934 8.00190 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.016558 B = 0.009018 C = 0.006096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.584745 B = 3104.243432 C = 4592.239391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C 0.331 3.669 3 C -0.377 4.377 4 S 0.054 5.946 5 C -0.127 4.127 6 C -0.091 4.091 7 C -0.080 4.080 8 C 0.127 3.873 9 O -0.588 6.588 10 C -0.126 4.126 11 C -0.050 4.050 12 C -0.074 4.074 13 C 0.160 3.840 14 C -0.447 4.447 15 H 0.079 0.921 16 C 0.054 3.946 17 N -0.769 5.769 18 Si 0.974 3.026 19 H -0.250 1.250 20 H -0.250 1.250 21 H -0.269 1.269 22 H 0.140 0.860 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.399 0.601 26 H 0.147 0.853 27 H 0.119 0.881 28 H 0.307 0.693 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.327 0.530 -0.337 15.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.225 5.225 2 C 0.024 3.976 3 C -0.497 4.497 4 S 0.312 5.688 5 C -0.242 4.242 6 C -0.114 4.114 7 C -0.083 4.083 8 C 0.050 3.950 9 O -0.398 6.398 10 C -0.147 4.147 11 C -0.070 4.070 12 C -0.082 4.082 13 C 0.148 3.852 14 C -0.478 4.478 15 H 0.097 0.903 16 C -0.170 4.170 17 N -0.391 5.391 18 Si 0.793 3.207 19 H -0.174 1.174 20 H -0.173 1.173 21 H -0.194 1.194 22 H 0.157 0.843 23 H 0.091 0.909 24 H 0.095 0.905 25 H 0.250 0.750 26 H 0.165 0.835 27 H 0.137 0.863 28 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 12.671 1.592 0.351 12.775 hybrid contribution 0.422 -1.752 -0.760 1.955 sum 13.093 -0.159 -0.408 13.100 Atomic orbital electron populations 1.80987 1.12304 1.12159 1.17054 1.24659 0.91422 0.90973 0.90568 1.18990 0.87395 1.09681 1.33611 1.82564 0.93757 1.23402 1.69034 1.22781 0.98004 0.99069 1.04361 1.20547 0.88553 1.00251 1.02083 1.19769 0.95306 0.94392 0.98841 1.20953 0.89507 0.95825 0.88744 1.86543 1.36110 1.73822 1.43294 1.21050 0.96046 0.97185 1.00422 1.21109 0.91184 0.97805 0.96874 1.19418 0.93527 0.94417 1.00881 1.17751 0.89286 0.91535 0.86604 1.19430 1.11011 0.91999 1.25335 0.90307 1.26735 0.92542 1.01940 0.95805 1.69734 1.18231 1.28591 1.22495 0.85354 0.79784 0.76324 0.79232 1.17393 1.17342 1.19413 0.84259 0.90928 0.90472 0.75019 0.83526 0.86324 0.88067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.54 -28.91 18.54 19.00 0.35 -28.56 15 2 C 0.33 17.50 15.20 88.33 1.34 18.84 15 3 C -0.38 -19.24 6.31 23.61 0.15 -19.09 15 4 S 0.05 2.35 23.12 -56.49 -1.31 1.04 15 5 C -0.13 -5.35 6.41 22.96 0.15 -5.20 15 6 C -0.09 -3.11 9.71 22.54 0.22 -2.89 15 7 C -0.08 -2.45 5.50 -19.93 -0.11 -2.55 15 8 C 0.13 2.59 7.17 71.24 0.51 3.10 15 9 O -0.59 -12.34 13.64 -148.98 -2.03 -14.38 15 10 C -0.13 -4.11 9.67 22.16 0.21 -3.89 15 11 C -0.05 -2.01 8.38 22.70 0.19 -1.82 15 12 C -0.07 -3.40 5.55 -20.22 -0.11 -3.51 15 13 C 0.16 8.18 5.42 -20.68 -0.11 8.07 15 14 C -0.45 -22.51 8.51 23.15 0.20 -22.31 15 15 H 0.08 4.07 7.90 -2.91 -0.02 4.05 15 16 C 0.05 2.37 4.04 85.41 0.35 2.71 15 17 N -0.77 -34.00 10.72 21.91 0.23 -33.76 15 18 Si 0.97 33.49 29.61 68.60 2.03 35.52 15 19 H -0.25 -8.35 7.11 99.48 0.71 -7.64 15 20 H -0.25 -7.69 7.11 99.48 0.71 -6.99 15 21 H -0.27 -9.70 7.11 99.48 0.71 -8.99 15 22 H 0.14 4.01 8.06 -2.91 -0.02 3.99 15 23 H 0.07 1.19 8.08 -2.39 -0.02 1.17 15 24 H 0.08 1.22 8.08 -2.39 -0.02 1.20 15 25 H 0.40 3.75 9.12 -74.06 -0.68 3.08 15 26 H 0.15 3.76 8.06 -2.91 -0.02 3.74 15 27 H 0.12 4.77 5.94 -2.91 -0.02 4.75 15 28 H 0.31 11.84 8.29 -92.71 -0.77 11.07 15 Total: -1.00 -62.08 272.34 2.81 -59.27 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: 0.55 Total: 9.43 kcal Atomic # 6 Polarization: -31.54 SS G_CDS: 2.98 Total: -28.56 kcal Atomic # 7 Polarization: -62.91 SS G_CDS: 0.59 Total: -62.32 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: -2.03 Total: -14.38 kcal Atomic # 14 Polarization: 33.49 SS G_CDS: 2.03 Total: 35.52 kcal Atomic # 16 Polarization: 2.35 SS G_CDS: -1.31 Total: 1.04 kcal Total: -62.08 2.81 -59.27 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396216439.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.082 kcal (2) G-P(sol) polarization free energy of solvation -62.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds