Wall clock time and date at job start Mon Mar 30 2020 06:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 S 1.75250 * 124.35513 * 314.70208 * 3 2 1 5 5 C 1.75978 * 92.32962 * 180.27032 * 4 3 2 6 6 C 1.40569 * 130.12827 * 180.02562 * 5 4 3 7 7 C 1.35610 * 120.87480 * 179.97438 * 6 5 4 8 8 C 1.41233 * 120.16363 * 0.02562 * 7 6 5 9 9 C 1.41263 * 120.05145 * 180.02562 * 8 7 6 10 10 H 1.07996 * 119.99941 * 24.87514 * 9 8 7 11 11 C 1.39864 * 120.00321 * 204.87808 * 9 8 7 12 12 N 1.30900 * 119.99715 * 18.01732 * 11 9 8 13 13 Si 1.86799 * 120.00367 * 198.02255 * 11 9 8 14 14 H 1.48502 * 109.46681 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47069 * 119.99449 * 13 11 9 16 16 H 1.48501 * 109.46960 * 240.00012 * 13 11 9 17 17 C 1.39822 * 119.89924 * 359.97438 * 8 7 6 18 18 C 1.40353 * 109.77920 * 0.02562 * 5 4 3 19 19 C 1.33576 * 124.34824 * 135.01083 * 3 2 1 20 20 C 1.50704 * 122.68689 * 359.70417 * 19 3 2 21 21 O 1.42900 * 109.47192 * 90.02868 * 20 19 3 22 22 H 1.08003 * 119.56031 * 0.02562 * 6 5 4 23 23 H 1.07994 * 119.92176 * 179.97438 * 7 6 5 24 24 H 0.97001 * 120.00203 * 180.02562 * 12 11 9 25 25 H 1.07999 * 120.01632 * 180.02562 * 17 8 7 26 26 H 1.09000 * 109.47347 * 210.02874 * 20 19 3 27 27 H 1.09000 * 109.47026 * 330.03197 * 20 19 3 28 28 H 0.96700 * 114.00321 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 16 3.5574 -1.0166 1.0283 5 6 5.0491 -0.3536 0.3709 6 6 6.3873 -0.6535 0.6796 7 6 7.4061 -0.0195 0.0479 8 6 7.1334 0.9575 -0.9349 9 6 8.1965 1.6160 -1.5918 10 1 9.1628 1.1397 -1.6667 11 6 7.9977 2.8850 -2.1453 12 7 6.9754 3.6106 -1.7684 13 14 9.1907 3.5444 -3.4225 14 1 10.2534 2.5378 -3.6734 15 1 8.4609 3.8198 -4.6861 16 1 9.8068 4.7998 -2.9228 17 6 5.8095 1.2711 -1.2573 18 6 4.7509 0.6132 -0.6018 19 6 3.3213 0.7809 -0.7797 20 6 2.7329 1.7574 -1.7653 21 8 2.5414 3.0215 -1.1270 22 1 6.6069 -1.3993 1.4293 23 1 8.4285 -0.2617 0.2974 24 1 6.8373 4.4905 -2.1525 25 1 5.5988 2.0176 -2.0088 26 1 3.4124 1.8759 -2.6093 27 1 1.7738 1.3811 -2.1211 28 1 2.1643 3.7002 -1.7034 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396217083.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:44 Heat of formation + Delta-G solvation = -4.442811 kcal Electronic energy + Delta-G solvation = -15992.192452 eV Core-core repulsion = 13291.461808 eV Total energy + Delta-G solvation = -2700.730644 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.26295 -38.46662 -37.52588 -36.24670 -34.97898 -31.53191 -30.73241 -28.40489 -27.18802 -24.42498 -23.00521 -21.10536 -19.57856 -19.14068 -18.48181 -17.40872 -16.95402 -16.60883 -15.77111 -15.29930 -15.17455 -15.12965 -14.71107 -14.27966 -14.16235 -13.98008 -13.70781 -13.38179 -13.05291 -12.85190 -12.69713 -12.34161 -11.86752 -11.70347 -11.59989 -11.35405 -11.05043 -10.96066 -10.11938 -9.29118 -8.63126 -8.50091 -6.28938 -0.53713 0.31005 0.80708 1.12620 1.25662 1.44709 1.49719 1.58637 1.71275 2.09579 2.23787 2.65681 2.70574 3.48805 3.65930 3.95824 4.09304 4.22132 4.35896 4.55606 4.68799 4.95019 5.03111 5.19312 5.29227 5.53629 5.66010 5.77496 6.03043 6.18305 6.21851 6.61280 6.83462 6.90061 6.92548 8.33183 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.025361 B = 0.006906 C = 0.005572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.800685 B = 4053.673571 C = 5024.323074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C 0.305 3.695 3 C -0.127 4.127 4 S 0.136 5.864 5 C -0.240 4.240 6 C -0.066 4.066 7 C -0.174 4.174 8 C 0.077 3.923 9 C -0.485 4.485 10 H 0.085 0.915 11 C 0.037 3.963 12 N -0.813 5.813 13 Si 0.978 3.022 14 H -0.256 1.256 15 H -0.266 1.266 16 H -0.270 1.270 17 C -0.155 4.155 18 C -0.062 4.062 19 C -0.020 4.020 20 C 0.132 3.868 21 O -0.577 6.577 22 H 0.133 0.867 23 H 0.123 0.877 24 H 0.289 0.711 25 H 0.112 0.888 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.212 -2.707 -1.302 3.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.108 5.108 2 C -0.011 4.011 3 C -0.245 4.245 4 S 0.400 5.600 5 C -0.355 4.355 6 C -0.088 4.088 7 C -0.195 4.195 8 C 0.073 3.927 9 C -0.514 4.514 10 H 0.103 0.897 11 C -0.179 4.179 12 N -0.438 5.438 13 Si 0.799 3.201 14 H -0.179 1.179 15 H -0.191 1.191 16 H -0.195 1.195 17 C -0.178 4.178 18 C -0.067 4.067 19 C -0.041 4.041 20 C 0.053 3.947 21 O -0.385 6.385 22 H 0.151 0.849 23 H 0.141 0.859 24 H 0.100 0.900 25 H 0.130 0.870 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -4.206 -3.932 0.319 5.767 hybrid contribution 1.031 1.875 -1.928 2.880 sum -3.175 -2.057 -1.609 4.111 Atomic orbital electron populations 1.81200 1.11269 1.09513 1.08864 1.24314 0.90887 0.92723 0.93148 1.19127 0.88487 1.08959 1.07914 1.83126 0.93084 1.42045 1.41734 1.22435 0.97490 1.07628 1.07937 1.20012 0.89115 0.99813 0.99888 1.21111 0.98458 1.01195 0.98704 1.17783 0.92995 0.91437 0.90473 1.19849 0.98322 1.01265 1.31948 0.89663 1.26710 0.97561 0.96513 0.97135 1.69917 1.28235 1.10287 1.35394 0.85207 0.78599 0.78478 0.77794 1.17948 1.19106 1.19524 1.21110 0.90824 1.02920 1.02963 1.18894 0.91290 0.97994 0.98542 1.20008 0.91855 0.95554 0.96639 1.20704 0.98805 0.82899 0.92327 1.86551 1.87239 1.21787 1.42956 0.84900 0.85865 0.90001 0.86994 0.91519 0.91401 0.75135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -14.91 18.54 19.00 0.35 -14.56 15 2 C 0.30 10.33 14.65 88.33 1.29 11.62 15 3 C -0.13 -4.50 6.15 22.46 0.14 -4.36 15 4 S 0.14 4.54 23.16 -56.49 -1.31 3.23 15 5 C -0.24 -9.71 6.51 23.35 0.15 -9.56 15 6 C -0.07 -2.58 9.98 22.23 0.22 -2.35 15 7 C -0.17 -7.44 9.70 22.40 0.22 -7.22 15 8 C 0.08 3.75 5.56 -21.42 -0.12 3.63 15 9 C -0.48 -23.57 9.03 23.41 0.21 -23.36 15 10 H 0.09 3.93 7.91 -2.91 -0.02 3.91 15 11 C 0.04 1.72 5.12 85.23 0.44 2.16 15 12 N -0.81 -39.53 10.98 21.82 0.24 -39.29 15 13 Si 0.98 35.09 29.60 68.60 2.03 37.12 15 14 H -0.26 -8.94 7.11 99.48 0.71 -8.24 15 15 H -0.27 -9.26 7.11 99.48 0.71 -8.55 15 16 H -0.27 -9.47 7.11 99.48 0.71 -8.76 15 17 C -0.16 -7.56 8.43 23.28 0.20 -7.36 15 18 C -0.06 -2.73 6.00 -20.39 -0.12 -2.85 15 19 C -0.02 -0.78 5.65 -19.18 -0.11 -0.89 15 20 C 0.13 4.38 6.88 71.24 0.49 4.87 15 21 O -0.58 -19.42 13.64 -148.98 -2.03 -21.45 15 22 H 0.13 4.22 8.06 -2.91 -0.02 4.19 15 23 H 0.12 4.72 8.06 -2.91 -0.02 4.70 15 24 H 0.29 12.73 8.30 -92.71 -0.77 11.96 15 25 H 0.11 5.69 5.71 -2.91 -0.02 5.67 15 26 H 0.07 2.18 7.57 -2.39 -0.02 2.17 15 27 H 0.07 1.92 7.45 -2.39 -0.02 1.90 15 28 H 0.40 8.87 9.12 -74.06 -0.68 8.20 15 Total: -1.00 -56.31 273.06 2.84 -53.46 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 0.55 Total: 17.15 kcal Atomic # 6 Polarization: -38.67 SS G_CDS: 3.01 Total: -35.66 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: 0.59 Total: -53.85 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -2.03 Total: -21.45 kcal Atomic # 14 Polarization: 35.09 SS G_CDS: 2.03 Total: 37.12 kcal Atomic # 16 Polarization: 4.54 SS G_CDS: -1.31 Total: 3.23 kcal Total: -56.31 2.84 -53.46 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396217083.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.022 kcal (2) G-P(sol) polarization free energy of solvation -56.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds