Wall clock time and date at job start Mon Mar 30 2020 06:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35644 * 116.99820 * 2 1 4 4 C 1.37958 * 122.61098 * 90.02706 * 3 2 1 5 5 C 1.39425 * 124.89308 * 359.93578 * 4 3 2 6 6 H 1.07997 * 120.00298 * 0.02562 * 5 4 3 7 7 C 1.40248 * 119.99681 * 179.72662 * 5 4 3 8 8 N 1.30770 * 120.00125 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99614 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47350 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46893 * 120.00045 * 9 7 5 12 12 H 1.48496 * 109.47422 * 240.00108 * 9 7 5 13 13 S 1.75439 * 110.21362 * 180.20760 * 4 3 2 14 14 C 1.76031 * 91.85877 * 359.69505 * 13 4 3 15 15 C 1.39557 * 129.99475 * 180.02562 * 14 13 4 16 16 C 1.37958 * 120.82980 * 180.28156 * 15 14 13 17 17 C 1.38335 * 120.41946 * 0.02562 * 16 15 14 18 18 C 1.38753 * 120.27680 * 359.95992 * 17 16 15 19 19 C 1.43198 * 119.99092 * 180.02562 * 18 17 16 20 20 N 3.14602 * 82.71089 * 255.51355 * 2 1 3 21 21 C 1.39801 * 122.60565 * 269.99643 * 3 2 1 22 22 H 1.09006 * 109.46943 * 300.00073 * 1 2 3 23 23 H 1.08997 * 109.46967 * 60.00034 * 1 2 3 24 24 H 1.08994 * 109.47075 * 180.02562 * 1 2 3 25 25 H 0.97000 * 119.99398 * 179.97438 * 8 7 5 26 26 H 1.08000 * 119.58138 * 0.25842 * 15 14 13 27 27 H 1.08000 * 119.78792 * 180.02562 * 16 15 14 28 28 H 1.07999 * 119.85770 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 2.3828 1.8708 1.1621 5 6 2.1400 1.3958 2.4502 6 1 1.6534 0.4421 2.5913 7 6 2.5334 2.1537 3.5628 8 7 3.1274 3.3061 3.3920 9 14 2.2088 1.5169 5.2886 10 1 1.5294 0.1988 5.2103 11 1 3.4973 1.3670 6.0114 12 1 1.3421 2.4785 6.0162 13 16 3.1552 3.4004 0.7854 14 6 3.0145 3.1107 -0.9452 15 6 3.4170 3.9013 -2.0225 16 6 3.2055 3.4870 -3.3213 17 6 2.5879 2.2762 -3.5786 18 6 2.1752 1.4650 -2.5313 19 6 1.5369 0.2125 -2.8046 20 7 1.0298 -0.7806 -3.0214 21 6 2.3868 1.8798 -1.1777 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 3.3991 3.8304 4.1615 26 1 3.8997 4.8494 -1.8371 27 1 3.5242 4.1120 -4.1425 28 1 2.4265 1.9610 -4.5989 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396217196.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:52 Heat of formation + Delta-G solvation = 7.023810 kcal Electronic energy + Delta-G solvation = -16316.420938 eV Core-core repulsion = 13616.187524 eV Total energy + Delta-G solvation = -2700.233414 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.86509 -36.86985 -35.46082 -34.77979 -32.66291 -30.27529 -29.37935 -26.53575 -25.24332 -22.57253 -22.37328 -19.54747 -18.83219 -17.34630 -16.09650 -15.82558 -15.15392 -14.48004 -14.38031 -14.20781 -13.68534 -13.18824 -13.00015 -12.71286 -12.36921 -12.08376 -11.90026 -11.83722 -11.68289 -11.32182 -11.11758 -10.70935 -10.64488 -10.51293 -10.24480 -9.53174 -9.44810 -8.67914 -8.49357 -7.71911 -7.50018 -6.56107 -4.90948 1.48509 2.05214 2.61785 2.70725 2.80297 2.95807 3.18842 3.35930 3.49574 3.70026 3.81818 4.40771 4.76459 4.95402 5.38068 5.59928 5.72386 5.99935 6.17793 6.23913 6.34477 6.35470 6.41833 6.61202 6.76827 6.95489 7.11837 7.23539 7.33007 7.55296 7.70579 7.79829 8.09779 8.44824 8.92789 9.30432 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.024726 B = 0.008274 C = 0.006312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.125020 B = 3383.150592 C = 4434.670007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.295 6.295 3 C -0.170 4.170 4 C 0.037 3.963 5 C -0.339 4.339 6 H 0.109 0.891 7 C 0.049 3.951 8 N -0.755 5.755 9 Si 0.943 3.057 10 H -0.252 1.252 11 H -0.263 1.263 12 H -0.264 1.264 13 S 0.164 5.836 14 C -0.262 4.262 15 C -0.023 4.023 16 C -0.204 4.204 17 C -0.045 4.045 18 C -0.090 4.090 19 C 0.284 3.716 20 N -0.468 5.468 21 C 0.049 3.951 22 H 0.034 0.966 23 H 0.023 0.977 24 H 0.067 0.933 25 H 0.307 0.693 26 H 0.110 0.890 27 H 0.115 0.885 28 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.530 4.143 0.306 4.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.210 6.210 3 C -0.220 4.220 4 C -0.084 4.084 5 C -0.372 4.372 6 H 0.126 0.874 7 C -0.176 4.176 8 N -0.380 5.380 9 Si 0.765 3.235 10 H -0.175 1.175 11 H -0.188 1.188 12 H -0.189 1.189 13 S 0.423 5.577 14 C -0.376 4.376 15 C -0.046 4.046 16 C -0.225 4.225 17 C -0.068 4.068 18 C -0.095 4.095 19 C -0.028 4.028 20 N -0.146 5.146 21 C 0.040 3.960 22 H 0.052 0.948 23 H 0.042 0.958 24 H 0.085 0.915 25 H 0.121 0.879 26 H 0.128 0.872 27 H 0.133 0.867 28 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.499 3.750 0.954 3.902 hybrid contribution -0.717 -0.723 -0.069 1.021 sum -0.218 3.027 0.885 3.161 Atomic orbital electron populations 1.22875 0.84857 1.00221 0.98899 1.86151 1.16425 1.24799 1.93668 1.17007 1.20313 0.95432 0.89229 1.21773 0.95414 0.95110 0.96106 1.19498 1.25329 1.03954 0.88391 0.87351 1.26530 0.92693 0.94015 1.04350 1.68609 1.24125 1.09607 1.35636 0.85616 0.79777 0.80573 0.77576 1.17476 1.18794 1.18886 1.84881 1.64182 1.18846 0.89757 1.23325 1.12160 0.99548 1.02561 1.20378 0.95946 0.97152 0.91126 1.20350 1.08264 0.98062 0.95810 1.20570 0.96030 0.93676 0.96545 1.15729 1.10150 0.90828 0.92809 1.25704 0.92453 0.92712 0.91962 1.81014 1.12097 1.11612 1.09843 1.17840 0.94567 0.92429 0.91205 0.94777 0.95834 0.91465 0.87889 0.87179 0.86712 0.86956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.64 101.05 1.08 1.66 15 2 O -0.29 -7.28 8.78 -18.63 -0.16 -7.44 15 3 C -0.17 -4.22 5.81 -39.10 -0.23 -4.45 15 4 C 0.04 0.90 6.13 -39.24 -0.24 0.66 15 5 C -0.34 -7.85 9.08 -38.38 -0.35 -8.20 15 6 H 0.11 2.49 7.72 -52.49 -0.41 2.08 15 7 C 0.05 1.01 5.50 -17.25 -0.09 0.91 15 8 N -0.76 -15.76 10.58 55.57 0.59 -15.18 15 9 Si 0.94 15.56 29.56 -169.99 -5.03 10.53 15 10 H -0.25 -4.21 7.11 56.52 0.40 -3.81 15 11 H -0.26 -4.27 7.11 56.52 0.40 -3.86 15 12 H -0.26 -4.25 7.11 56.52 0.40 -3.85 15 13 S 0.16 3.62 20.11 -107.50 -2.16 1.46 15 14 C -0.26 -5.67 6.45 -38.39 -0.25 -5.92 15 15 C -0.02 -0.42 10.04 -39.19 -0.39 -0.81 15 16 C -0.20 -3.41 10.01 -39.65 -0.40 -3.81 15 17 C -0.05 -0.81 9.70 -39.36 -0.38 -1.19 15 18 C -0.09 -1.92 5.81 -105.88 -0.62 -2.53 15 19 C 0.28 6.29 12.72 -22.47 -0.29 6.00 15 20 N -0.47 -10.61 18.54 41.84 0.78 -9.84 15 21 C 0.05 1.15 5.84 -106.70 -0.62 0.53 15 22 H 0.03 0.70 8.14 -51.93 -0.42 0.27 15 23 H 0.02 0.50 7.50 -51.93 -0.39 0.11 15 24 H 0.07 1.30 8.14 -51.93 -0.42 0.88 15 25 H 0.31 5.62 8.29 -40.82 -0.34 5.28 15 26 H 0.11 1.72 8.06 -52.49 -0.42 1.30 15 27 H 0.11 1.53 8.06 -52.49 -0.42 1.11 15 28 H 0.11 1.70 8.06 -52.49 -0.42 1.27 15 LS Contribution 270.60 15.07 4.08 4.08 Total: -1.00 -26.02 270.60 -6.73 -32.75 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -2.04 Total: 0.78 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: -2.78 Total: -17.16 kcal Atomic # 7 Polarization: -26.38 SS G_CDS: 1.36 Total: -25.01 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: -0.16 Total: -7.44 kcal Atomic # 14 Polarization: 15.56 SS G_CDS: -5.03 Total: 10.53 kcal Atomic # 16 Polarization: 3.62 SS G_CDS: -2.16 Total: 1.46 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -26.02 -6.73 -32.75 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396217196.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.778 kcal (2) G-P(sol) polarization free energy of solvation -26.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds