Wall clock time and date at job start Mon Mar 30 2020 06:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39051 * 120.01223 * 276.72259 * 3 2 1 5 5 C 1.38188 * 120.08906 * 179.73691 * 4 3 2 6 6 C 1.37850 * 120.38410 * 0.21120 * 5 4 3 7 7 C 1.39800 * 120.72397 * 0.02562 * 6 5 4 8 8 S 1.75816 * 130.13699 * 180.02562 * 7 6 5 9 9 C 1.69985 * 93.20253 * 180.02562 * 8 7 6 10 10 C 1.50699 * 124.04998 * 180.02562 * 9 8 7 11 11 O 1.42902 * 109.47509 * 264.46636 * 10 9 8 12 12 C 1.36591 * 111.90071 * 0.02562 * 9 8 7 13 13 C 1.40918 * 123.29551 * 179.97438 * 12 9 8 14 14 H 1.07993 * 120.00229 * 228.40302 * 13 12 9 15 15 C 1.39699 * 119.99475 * 48.40583 * 13 12 9 16 16 N 1.31078 * 120.00789 * 21.80951 * 15 13 12 17 17 Si 1.86810 * 119.99541 * 201.81161 * 15 13 12 18 18 H 1.48501 * 109.46996 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.46944 * 119.99798 * 17 15 13 20 20 H 1.48500 * 109.47025 * 239.99878 * 17 15 13 21 21 C 1.39278 * 119.70125 * 0.02562 * 7 6 5 22 22 H 1.08007 * 119.95944 * 359.97250 * 4 3 2 23 23 H 1.07999 * 119.80974 * 180.23566 * 5 4 3 24 24 H 1.07998 * 119.63682 * 180.02562 * 6 5 4 25 25 H 1.08998 * 109.47297 * 24.46900 * 10 9 8 26 26 H 1.09005 * 109.47293 * 144.46219 * 10 9 8 27 27 H 0.96701 * 113.99795 * 180.02562 * 11 10 9 28 28 H 0.97000 * 120.00561 * 184.79467 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2636 -0.1400 1.1958 5 6 4.6454 -0.1451 1.1970 6 6 5.3442 -0.0068 0.0168 7 6 4.6704 0.1412 -1.1991 8 16 5.3017 0.3329 -2.8288 9 6 3.7519 0.4230 -3.5211 10 6 3.4953 0.5997 -4.9955 11 8 3.2927 1.9852 -5.2811 12 6 2.7668 0.3159 -2.5808 13 6 1.3930 0.3602 -2.8913 14 1 0.7321 1.0005 -2.3262 15 6 0.8861 -0.4245 -3.9300 16 7 1.5421 -1.4866 -4.3295 17 14 -0.7270 0.0401 -4.7498 18 1 -1.2653 1.2726 -4.1200 19 1 -0.4948 0.2847 -6.1959 20 1 -1.7027 -1.0672 -4.5854 21 6 3.2778 0.1497 -1.2197 22 1 2.7231 -0.2493 2.1245 23 1 5.1811 -0.2584 2.1279 24 1 6.4241 -0.0128 0.0317 25 1 4.3530 0.2340 -5.5600 26 1 2.6065 0.0364 -5.2798 27 1 3.1214 2.1735 -6.2140 28 1 1.2272 -1.9917 -5.0954 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396217335.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:00 Heat of formation + Delta-G solvation = 17.724999 kcal Electronic energy + Delta-G solvation = -16435.446036 eV Core-core repulsion = 13735.676661 eV Total energy + Delta-G solvation = -2699.769375 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.00414 -36.38939 -35.58335 -34.60709 -32.52230 -30.69585 -29.19206 -26.98984 -24.71987 -22.68186 -21.86346 -19.51539 -18.42995 -16.73303 -16.44232 -15.88433 -15.07751 -14.86527 -14.60220 -14.23119 -13.48514 -13.22550 -12.82482 -12.43671 -12.35647 -12.18585 -12.02990 -11.68302 -11.52708 -11.18702 -10.99488 -10.72841 -10.39923 -10.22022 -10.03088 -9.64947 -9.34718 -8.79578 -8.41386 -7.61112 -6.90854 -6.55739 -4.45677 1.20884 1.65102 2.53522 2.93791 3.10878 3.20036 3.35736 3.41248 3.56678 3.70329 4.01579 4.50874 4.66619 4.92869 5.27921 5.32240 5.58828 5.62267 5.90647 6.13705 6.17289 6.34414 6.55334 6.67778 6.80366 6.88353 7.02413 7.19542 7.34118 7.75476 8.28651 8.31652 8.50933 8.61111 8.81557 10.21293 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.018552 B = 0.010812 C = 0.007399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.886136 B = 2589.115701 C = 3783.259169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C 0.277 3.723 3 C 0.012 3.988 4 C -0.089 4.089 5 C -0.128 4.128 6 C -0.066 4.066 7 C -0.144 4.144 8 S 0.076 5.924 9 C -0.304 4.304 10 C 0.168 3.832 11 O -0.569 6.569 12 C 0.119 3.881 13 C -0.451 4.451 14 H 0.080 0.920 15 C 0.086 3.914 16 N -0.801 5.801 17 Si 0.892 3.108 18 H -0.260 1.260 19 H -0.272 1.272 20 H -0.276 1.276 21 C -0.024 4.024 22 H 0.126 0.874 23 H 0.128 0.872 24 H 0.121 0.879 25 H 0.017 0.983 26 H 0.081 0.919 27 H 0.357 0.643 28 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.782 1.070 3.278 7.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.109 5.109 2 C -0.038 4.038 3 C 0.007 3.993 4 C -0.114 4.114 5 C -0.149 4.149 6 C -0.091 4.091 7 C -0.260 4.260 8 S 0.342 5.658 9 C -0.421 4.421 10 C 0.090 3.910 11 O -0.373 6.373 12 C 0.109 3.891 13 C -0.485 4.485 14 H 0.098 0.902 15 C -0.128 4.128 16 N -0.430 5.430 17 Si 0.717 3.283 18 H -0.183 1.183 19 H -0.197 1.197 20 H -0.202 1.202 21 C -0.036 4.036 22 H 0.144 0.856 23 H 0.146 0.854 24 H 0.139 0.861 25 H 0.035 0.965 26 H 0.098 0.902 27 H 0.201 0.799 28 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.483 0.962 3.086 7.244 hybrid contribution -1.800 -0.144 -0.665 1.924 sum 4.683 0.819 2.421 5.335 Atomic orbital electron populations 1.81041 1.12249 1.08804 1.08799 1.25383 0.92536 0.93541 0.92345 1.15807 0.84394 1.05979 0.93128 1.20803 0.94348 1.00416 0.95811 1.20643 0.93417 1.03365 0.97441 1.20575 0.99137 0.99042 0.90315 1.22579 0.96570 1.08394 0.98424 1.81887 1.09688 1.79397 0.94834 1.22569 0.94005 1.26593 0.98943 1.20282 0.99191 0.81370 0.90207 1.86642 1.94716 1.26908 1.29043 1.17180 0.94306 0.91508 0.86061 1.18765 0.91979 1.22117 1.15600 0.90203 1.25505 0.98562 0.92795 0.95982 1.69974 1.39898 1.11125 1.21982 0.86493 0.82343 0.79978 0.79491 1.18341 1.19677 1.20157 1.19822 0.91557 0.98061 0.94204 0.85596 0.85441 0.86084 0.96462 0.90186 0.79872 0.91133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -9.98 18.35 41.83 0.77 -9.21 15 2 C 0.28 6.04 12.97 -22.47 -0.29 5.75 15 3 C 0.01 0.24 5.78 -106.26 -0.61 -0.37 15 4 C -0.09 -1.40 9.72 -39.30 -0.38 -1.78 15 5 C -0.13 -1.77 10.01 -39.74 -0.40 -2.17 15 6 C -0.07 -1.04 10.05 -39.14 -0.39 -1.44 15 7 C -0.14 -2.88 6.44 -38.61 -0.25 -3.13 15 8 S 0.08 1.55 22.89 -107.50 -2.46 -0.91 15 9 C -0.30 -7.37 5.61 -34.90 -0.20 -7.56 15 10 C 0.17 3.82 6.88 36.01 0.25 4.07 15 11 O -0.57 -12.24 13.64 -35.23 -0.48 -12.72 15 12 C 0.12 3.05 5.25 -106.22 -0.56 2.49 15 13 C -0.45 -12.02 7.31 -38.02 -0.28 -12.30 15 14 H 0.08 2.20 6.99 -52.49 -0.37 1.83 15 15 C 0.09 2.20 3.73 -17.33 -0.06 2.13 15 16 N -0.80 -20.59 11.39 55.54 0.63 -19.95 15 17 Si 0.89 19.92 29.62 -169.99 -5.03 14.89 15 18 H -0.26 -5.95 7.11 56.52 0.40 -5.55 15 19 H -0.27 -5.75 7.11 56.52 0.40 -5.35 15 20 H -0.28 -6.15 7.11 56.52 0.40 -5.75 15 21 C -0.02 -0.54 6.01 -104.85 -0.63 -1.17 15 22 H 0.13 1.59 8.06 -52.48 -0.42 1.16 15 23 H 0.13 1.27 8.06 -52.49 -0.42 0.85 15 24 H 0.12 1.54 8.06 -52.49 -0.42 1.12 15 25 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 15 26 H 0.08 1.93 4.48 -51.93 -0.23 1.70 15 27 H 0.36 5.67 9.12 45.56 0.42 6.08 15 28 H 0.28 6.56 8.31 -40.82 -0.34 6.22 15 LS Contribution 268.18 15.07 4.04 4.04 Total: -1.00 -29.74 268.18 -7.35 -37.08 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -1.01 Total: 2.25 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: -3.81 Total: -15.48 kcal Atomic # 7 Polarization: -30.56 SS G_CDS: 1.40 Total: -29.16 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: -0.48 Total: -12.72 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.03 Total: 14.89 kcal Atomic # 16 Polarization: 1.55 SS G_CDS: -2.46 Total: -0.91 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.74 -7.35 -37.08 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396217335.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.810 kcal (2) G-P(sol) polarization free energy of solvation -29.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds