Wall clock time and date at job start Mon Mar 30 2020 06:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39051 * 120.01223 * 276.72259 * 3 2 1 5 5 C 1.38188 * 120.08906 * 179.73691 * 4 3 2 6 6 C 1.37850 * 120.38410 * 0.21120 * 5 4 3 7 7 C 1.39800 * 120.72397 * 0.02562 * 6 5 4 8 8 S 1.75816 * 130.13699 * 180.02562 * 7 6 5 9 9 C 1.69985 * 93.20253 * 180.02562 * 8 7 6 10 10 C 1.50699 * 124.04998 * 180.02562 * 9 8 7 11 11 O 1.42902 * 109.47509 * 264.46636 * 10 9 8 12 12 C 1.36591 * 111.90071 * 0.02562 * 9 8 7 13 13 C 1.40918 * 123.29551 * 179.97438 * 12 9 8 14 14 H 1.07993 * 120.00229 * 228.40302 * 13 12 9 15 15 C 1.39699 * 119.99475 * 48.40583 * 13 12 9 16 16 N 1.31078 * 120.00789 * 21.80951 * 15 13 12 17 17 Si 1.86810 * 119.99541 * 201.81161 * 15 13 12 18 18 H 1.48501 * 109.46996 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.46944 * 119.99798 * 17 15 13 20 20 H 1.48500 * 109.47025 * 239.99878 * 17 15 13 21 21 C 1.39278 * 119.70125 * 0.02562 * 7 6 5 22 22 H 1.08007 * 119.95944 * 359.97250 * 4 3 2 23 23 H 1.07999 * 119.80974 * 180.23566 * 5 4 3 24 24 H 1.07998 * 119.63682 * 180.02562 * 6 5 4 25 25 H 1.08998 * 109.47297 * 24.46900 * 10 9 8 26 26 H 1.09005 * 109.47293 * 144.46219 * 10 9 8 27 27 H 0.96701 * 113.99795 * 180.02562 * 11 10 9 28 28 H 0.97000 * 120.00561 * 184.79467 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2636 -0.1400 1.1958 5 6 4.6454 -0.1451 1.1970 6 6 5.3442 -0.0068 0.0168 7 6 4.6704 0.1412 -1.1991 8 16 5.3017 0.3329 -2.8288 9 6 3.7519 0.4230 -3.5211 10 6 3.4953 0.5997 -4.9955 11 8 3.2927 1.9852 -5.2811 12 6 2.7668 0.3159 -2.5808 13 6 1.3930 0.3602 -2.8913 14 1 0.7321 1.0005 -2.3262 15 6 0.8861 -0.4245 -3.9300 16 7 1.5421 -1.4866 -4.3295 17 14 -0.7270 0.0401 -4.7498 18 1 -1.2653 1.2726 -4.1200 19 1 -0.4948 0.2847 -6.1959 20 1 -1.7027 -1.0672 -4.5854 21 6 3.2778 0.1497 -1.2197 22 1 2.7231 -0.2493 2.1245 23 1 5.1811 -0.2584 2.1279 24 1 6.4241 -0.0128 0.0317 25 1 4.3530 0.2340 -5.5600 26 1 2.6065 0.0364 -5.2798 27 1 3.1214 2.1735 -6.2140 28 1 1.2272 -1.9917 -5.0954 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396217335.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:00 Heat of formation + Delta-G solvation = -2.142374 kcal Electronic energy + Delta-G solvation = -16436.307550 eV Core-core repulsion = 13735.676661 eV Total energy + Delta-G solvation = -2700.630889 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.46563 -38.08119 -37.25238 -36.29772 -34.24805 -32.10851 -30.75978 -28.80803 -26.32843 -24.15598 -23.43010 -21.21037 -19.91016 -18.55824 -18.14914 -17.37538 -16.82976 -16.35113 -16.20229 -15.64225 -15.08529 -14.89345 -14.47460 -14.05012 -13.97900 -13.87210 -13.73062 -13.33136 -13.19263 -12.86788 -12.46496 -12.41964 -12.12770 -11.84020 -11.56767 -11.33390 -11.10323 -10.41997 -10.05032 -9.14298 -8.74855 -8.23202 -6.35400 -0.25456 0.25847 1.02799 1.15942 1.26602 1.38681 1.66215 1.77360 1.89784 2.09115 2.18935 2.84220 3.15995 3.18783 3.81181 4.13139 4.17205 4.37687 4.45042 4.55895 4.74726 4.83942 5.09969 5.16940 5.31307 5.35018 5.47620 5.52567 5.91677 5.99850 6.40627 6.66111 6.74755 6.92406 7.06238 8.37022 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.018552 B = 0.010812 C = 0.007399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.886136 B = 2589.115701 C = 3783.259169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C 0.286 3.714 3 C -0.023 4.023 4 C -0.065 4.065 5 C -0.103 4.103 6 C -0.055 4.055 7 C -0.160 4.160 8 S 0.103 5.897 9 C -0.325 4.325 10 C 0.168 3.832 11 O -0.584 6.584 12 C 0.087 3.913 13 C -0.479 4.479 14 H 0.053 0.947 15 C 0.059 3.941 16 N -0.829 5.829 17 Si 0.937 3.063 18 H -0.276 1.276 19 H -0.251 1.251 20 H -0.275 1.275 21 C -0.065 4.065 22 H 0.162 0.838 23 H 0.186 0.814 24 H 0.161 0.839 25 H 0.032 0.968 26 H 0.064 0.936 27 H 0.381 0.619 28 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.222 0.907 5.232 10.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.150 5.150 2 C -0.028 4.028 3 C -0.028 4.028 4 C -0.088 4.088 5 C -0.124 4.124 6 C -0.079 4.079 7 C -0.276 4.276 8 S 0.369 5.631 9 C -0.442 4.442 10 C 0.090 3.910 11 O -0.391 6.391 12 C 0.076 3.924 13 C -0.513 4.513 14 H 0.071 0.929 15 C -0.153 4.153 16 N -0.459 5.459 17 Si 0.760 3.240 18 H -0.201 1.201 19 H -0.174 1.174 20 H -0.201 1.201 21 C -0.077 4.077 22 H 0.180 0.820 23 H 0.204 0.796 24 H 0.179 0.821 25 H 0.050 0.950 26 H 0.082 0.918 27 H 0.228 0.772 28 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.931 0.804 5.024 10.279 hybrid contribution -2.382 -0.048 -1.104 2.626 sum 6.549 0.756 3.921 7.670 Atomic orbital electron populations 1.81008 1.13387 1.10647 1.10006 1.25896 0.93176 0.92411 0.91294 1.16133 0.83437 1.08892 0.94310 1.21355 0.95518 0.96722 0.95240 1.21318 0.92506 0.99614 0.98945 1.21159 1.01238 0.96485 0.88983 1.22872 0.95709 1.09414 0.99572 1.81490 1.06908 1.79461 0.95271 1.23050 0.96258 1.25287 0.99565 1.20213 0.99061 0.81646 0.90123 1.86566 1.94765 1.26241 1.31494 1.17552 0.94256 0.92225 0.88328 1.18678 0.92684 1.23107 1.16868 0.92877 1.25937 1.00628 0.92567 0.96182 1.69978 1.41298 1.11731 1.22844 0.85848 0.79605 0.78789 0.79750 1.20069 1.17437 1.20053 1.19856 0.93168 1.00811 0.93858 0.81999 0.79644 0.82136 0.94987 0.91820 0.77176 0.90608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -22.66 18.35 19.00 0.35 -22.31 15 2 C 0.29 12.77 12.97 88.33 1.15 13.91 15 3 C -0.02 -0.89 5.78 -20.93 -0.12 -1.01 15 4 C -0.07 -1.75 9.72 22.45 0.22 -1.54 15 5 C -0.10 -2.20 10.01 22.17 0.22 -1.98 15 6 C -0.05 -1.45 10.05 22.56 0.23 -1.22 15 7 C -0.16 -6.08 6.44 22.90 0.15 -5.93 15 8 S 0.10 4.10 22.89 -56.49 -1.29 2.81 15 9 C -0.33 -15.98 5.61 25.30 0.14 -15.83 15 10 C 0.17 7.77 6.88 71.24 0.49 8.26 15 11 O -0.58 -25.27 13.64 -148.98 -2.03 -27.31 15 12 C 0.09 4.57 5.25 -20.90 -0.11 4.46 15 13 C -0.48 -26.82 7.31 23.28 0.17 -26.65 15 14 H 0.05 3.14 6.99 -2.91 -0.02 3.12 15 15 C 0.06 3.12 3.73 85.16 0.32 3.43 15 16 N -0.83 -44.03 11.39 21.79 0.25 -43.78 15 17 Si 0.94 42.37 29.62 68.60 2.03 44.40 15 18 H -0.28 -13.03 7.11 99.48 0.71 -12.33 15 19 H -0.25 -10.32 7.11 99.48 0.71 -9.62 15 20 H -0.28 -12.24 7.11 99.48 0.71 -11.54 15 21 C -0.06 -2.94 6.01 -20.01 -0.12 -3.06 15 22 H 0.16 3.21 8.06 -2.91 -0.02 3.19 15 23 H 0.19 2.00 8.06 -2.91 -0.02 1.97 15 24 H 0.16 3.00 8.06 -2.91 -0.02 2.98 15 25 H 0.03 1.34 8.14 -2.39 -0.02 1.32 15 26 H 0.06 3.17 4.48 -2.38 -0.01 3.16 15 27 H 0.38 11.97 9.12 -74.06 -0.68 11.29 15 28 H 0.28 13.77 8.31 -92.71 -0.77 13.00 15 Total: -1.00 -69.38 268.18 2.59 -66.79 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: 0.55 Total: 6.56 kcal Atomic # 6 Polarization: -29.89 SS G_CDS: 2.73 Total: -27.16 kcal Atomic # 7 Polarization: -66.69 SS G_CDS: 0.60 Total: -66.09 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -2.03 Total: -27.31 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Atomic # 16 Polarization: 4.10 SS G_CDS: -1.29 Total: 2.81 kcal Total: -69.38 2.59 -66.79 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396217335.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.647 kcal (2) G-P(sol) polarization free energy of solvation -69.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds