Wall clock time and date at job start Mon Mar 30 2020 06:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39298 * 119.96862 * 90.90778 * 3 2 1 5 5 C 1.38477 * 120.06215 * 179.97438 * 4 3 2 6 6 C 1.37163 * 120.73496 * 0.04320 * 5 4 3 7 7 C 1.41871 * 120.71190 * 359.95423 * 6 5 4 8 8 C 1.39856 * 128.45997 * 180.02562 * 7 6 5 9 9 C 1.50699 * 122.48144 * 359.71205 * 8 7 6 10 10 O 1.42898 * 109.47122 * 89.99714 * 9 8 7 11 11 C 1.36916 * 115.03063 * 179.97438 * 8 7 6 12 12 C 1.39904 * 124.82563 * 179.97438 * 11 8 7 13 13 H 1.07997 * 119.99989 * 353.30487 * 12 11 8 14 14 C 1.40208 * 119.99719 * 173.29837 * 12 11 8 15 15 N 1.30745 * 120.00159 * 6.60828 * 14 12 11 16 16 Si 1.86800 * 120.00000 * 186.60259 * 14 12 11 17 17 H 1.48501 * 109.46962 * 94.98644 * 16 14 12 18 18 H 1.48495 * 109.47325 * 214.98858 * 16 14 12 19 19 H 1.48496 * 109.46902 * 334.99101 * 16 14 12 20 20 S 1.75455 * 110.34328 * 0.02562 * 11 8 7 21 21 C 1.40294 * 118.68120 * 0.02562 * 7 6 5 22 22 H 1.07997 * 119.96703 * 359.97438 * 4 3 2 23 23 H 1.07997 * 119.62608 * 180.02562 * 5 4 3 24 24 H 1.07996 * 119.64442 * 179.97438 * 6 5 4 25 25 H 1.09006 * 109.46818 * 209.99876 * 9 8 7 26 26 H 1.09001 * 109.47036 * 329.99590 * 9 8 7 27 27 H 0.96704 * 113.99486 * 179.97438 * 10 9 8 28 28 H 0.97001 * 120.00242 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2638 0.0201 -1.2066 5 6 4.6486 0.0213 -1.2088 6 6 5.3515 0.0026 -0.0312 7 6 4.6755 -0.0175 1.2160 8 6 5.2237 -0.0374 2.5024 9 6 6.7105 -0.0469 2.7484 10 8 7.1859 1.2972 2.8447 11 6 4.3096 -0.0534 3.5216 12 6 4.6311 -0.0751 4.8830 13 1 5.6592 -0.1893 5.1933 14 6 3.6185 0.0516 5.8445 15 7 2.3642 0.0600 5.4757 16 14 4.0615 0.2082 7.6524 17 1 4.1090 1.6442 8.0278 18 1 3.0376 -0.4849 8.4748 19 1 5.3903 -0.4101 7.8917 20 16 2.6776 -0.0443 2.8773 21 6 3.2725 -0.0183 1.2214 22 1 2.7228 0.0342 -2.1411 23 1 5.1809 0.0368 -2.1484 24 1 6.4313 0.0034 -0.0535 25 1 6.9214 -0.5745 3.6787 26 1 7.2122 -0.5515 1.9227 27 1 8.1372 1.3675 3.0035 28 1 1.6636 0.1472 6.1409 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396217413.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:59 Heat of formation + Delta-G solvation = -24.482240 kcal Electronic energy + Delta-G solvation = -16021.181619 eV Core-core repulsion = 13319.582000 eV Total energy + Delta-G solvation = -2701.599619 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.20712 -38.14546 -37.20039 -36.41069 -34.86020 -31.94735 -30.97512 -28.37671 -26.52541 -23.98210 -23.61488 -21.17929 -19.48610 -18.66694 -18.02021 -17.63641 -17.03190 -16.04866 -15.97104 -15.42125 -15.09491 -14.72685 -14.61215 -14.06835 -14.02520 -13.86824 -13.65685 -13.23843 -13.14265 -12.89976 -12.73534 -12.07549 -11.99652 -11.87021 -11.57226 -11.10783 -10.91146 -10.60236 -10.16633 -9.26421 -8.96211 -8.34602 -6.56217 -0.10016 0.50587 1.20528 1.30296 1.35011 1.52886 1.60791 1.67462 1.84325 2.10451 2.17483 2.87149 3.04273 3.19916 4.18279 4.28313 4.32848 4.57406 4.63592 4.68817 4.84025 4.90292 4.95875 5.25135 5.36765 5.49453 5.65141 5.71650 5.91549 6.07625 6.21400 6.44811 6.48832 6.55740 7.26180 7.90564 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.020800 B = 0.008476 C = 0.006133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.854391 B = 3302.682872 C = 4564.152891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C 0.278 3.722 3 C -0.003 4.003 4 C -0.114 4.114 5 C -0.102 4.102 6 C -0.117 4.117 7 C 0.008 3.992 8 C -0.361 4.361 9 C 0.180 3.820 10 O -0.592 6.592 11 C 0.043 3.957 12 C -0.396 4.396 13 H 0.110 0.890 14 C 0.016 3.984 15 N -0.800 5.800 16 Si 1.010 2.990 17 H -0.261 1.261 18 H -0.262 1.262 19 H -0.245 1.245 20 S 0.096 5.904 21 C -0.244 4.244 22 H 0.152 0.848 23 H 0.164 0.836 24 H 0.132 0.868 25 H 0.037 0.963 26 H 0.049 0.951 27 H 0.380 0.620 28 H 0.311 0.689 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.846 -0.831 -2.682 8.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.145 5.145 2 C -0.035 4.035 3 C -0.011 4.011 4 C -0.136 4.136 5 C -0.122 4.122 6 C -0.138 4.138 7 C 0.000 4.000 8 C -0.368 4.368 9 C 0.102 3.898 10 O -0.399 6.399 11 C -0.076 4.076 12 C -0.429 4.429 13 H 0.128 0.872 14 C -0.204 4.204 15 N -0.426 5.426 16 Si 0.829 3.171 17 H -0.186 1.186 18 H -0.187 1.187 19 H -0.168 1.168 20 S 0.358 5.642 21 C -0.361 4.361 22 H 0.169 0.831 23 H 0.182 0.818 24 H 0.150 0.850 25 H 0.055 0.945 26 H 0.068 0.932 27 H 0.228 0.772 28 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.781 -0.720 -2.035 4.354 hybrid contribution 2.009 -0.010 0.385 2.045 sum 5.790 -0.730 -1.650 6.064 Atomic orbital electron populations 1.81088 1.12783 1.11417 1.09227 1.26193 0.93156 0.92175 0.92000 1.15488 0.82601 1.09458 0.93580 1.21064 0.94900 1.02741 0.94928 1.20947 0.92988 0.99836 0.98450 1.21347 0.99964 1.01951 0.90518 1.18028 0.90783 0.96780 0.94368 1.18425 0.95099 1.32949 0.90328 1.20039 0.89533 0.82208 0.98020 1.86680 1.28551 1.29034 1.95662 1.21623 0.93719 0.94901 0.97362 1.19705 0.96854 1.37307 0.89049 0.87246 1.27355 0.93554 0.91169 1.08279 1.68714 1.02132 1.31874 1.39846 0.84708 0.80167 0.79775 0.72500 1.18584 1.18659 1.16832 1.85096 1.08604 1.79113 0.91402 1.23727 0.98126 1.14729 0.99545 0.83075 0.81812 0.85049 0.94480 0.93250 0.77192 0.87593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -20.17 18.54 19.00 0.35 -19.82 15 2 C 0.28 11.54 15.05 88.33 1.33 12.87 15 3 C 0.00 -0.11 5.76 -21.10 -0.12 -0.23 15 4 C -0.11 -3.58 9.74 22.58 0.22 -3.36 15 5 C -0.10 -2.95 9.97 22.07 0.22 -2.73 15 6 C -0.12 -4.11 9.67 22.92 0.22 -3.89 15 7 C 0.01 0.36 5.84 -21.49 -0.13 0.23 15 8 C -0.36 -16.99 5.58 -19.78 -0.11 -17.10 15 9 C 0.18 6.96 6.78 71.24 0.48 7.45 15 10 O -0.59 -22.10 13.64 -148.98 -2.03 -24.14 15 11 C 0.04 2.20 6.10 22.36 0.14 2.34 15 12 C -0.40 -19.12 8.84 23.15 0.20 -18.92 15 13 H 0.11 4.93 6.62 -2.91 -0.02 4.91 15 14 C 0.02 0.70 5.49 85.33 0.47 1.17 15 15 N -0.80 -37.95 10.63 21.88 0.23 -37.71 15 16 Si 1.01 33.48 29.57 68.60 2.03 35.51 15 17 H -0.26 -8.57 7.11 99.48 0.71 -7.86 15 18 H -0.26 -8.27 7.11 99.48 0.71 -7.56 15 19 H -0.25 -7.67 7.11 99.48 0.71 -6.96 15 20 S 0.10 4.85 19.84 -56.49 -1.12 3.73 15 21 C -0.24 -11.30 6.34 23.45 0.15 -11.15 15 22 H 0.15 3.68 8.06 -2.91 -0.02 3.65 15 23 H 0.16 3.18 8.06 -2.91 -0.02 3.16 15 24 H 0.13 3.98 7.39 -2.91 -0.02 3.96 15 25 H 0.04 1.40 6.82 -2.38 -0.02 1.38 15 26 H 0.05 1.64 7.33 -2.39 -0.02 1.62 15 27 H 0.38 9.36 9.12 -74.05 -0.68 8.68 15 28 H 0.31 13.19 8.29 -92.71 -0.77 12.42 15 Total: -1.00 -61.44 270.38 3.09 -58.35 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: 0.55 Total: 17.40 kcal Atomic # 6 Polarization: -36.40 SS G_CDS: 3.07 Total: -33.32 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: 0.58 Total: -57.53 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -2.03 Total: -24.14 kcal Atomic # 14 Polarization: 33.48 SS G_CDS: 2.03 Total: 35.51 kcal Atomic # 16 Polarization: 4.85 SS G_CDS: -1.12 Total: 3.73 kcal Total: -61.44 3.09 -58.35 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396217413.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.864 kcal (2) G-P(sol) polarization free energy of solvation -61.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds