Wall clock time and date at job start Mon Mar 30 2020 06:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39285 * 119.97016 * 90.66533 * 3 2 1 5 5 C 1.38474 * 120.06287 * 180.02562 * 4 3 2 6 6 C 1.37164 * 120.73635 * 359.97438 * 5 4 3 7 7 C 1.50699 * 119.64709 * 180.02562 * 6 5 4 8 8 O 1.42908 * 109.46907 * 359.97438 * 7 6 5 9 9 C 1.41872 * 120.70735 * 0.02562 * 6 5 4 10 10 C 1.39854 * 128.45386 * 179.97438 * 9 6 5 11 11 C 1.36925 * 115.02874 * 179.97438 * 10 9 6 12 12 C 1.39898 * 124.82540 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00101 * 0.02562 * 12 11 10 14 14 C 1.40214 * 119.99630 * 180.02562 * 12 11 10 15 15 N 1.30738 * 120.00205 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99751 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46986 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47014 * 119.99659 * 16 14 12 19 19 H 1.48492 * 109.47129 * 239.99771 * 16 14 12 20 20 S 1.75456 * 110.34108 * 359.97438 * 11 10 9 21 21 C 1.40289 * 118.68364 * 359.97438 * 9 6 5 22 22 H 1.08003 * 119.96805 * 359.97438 * 4 3 2 23 23 H 1.08005 * 119.63337 * 180.02562 * 5 4 3 24 24 H 1.09000 * 109.47602 * 119.99983 * 7 6 5 25 25 H 1.09001 * 109.47202 * 240.00680 * 7 6 5 26 26 H 0.96701 * 113.99595 * 179.97438 * 8 7 6 27 27 H 1.07996 * 122.48950 * 0.25892 * 10 9 6 28 28 H 0.96996 * 120.00365 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2638 0.0150 -1.2065 5 6 4.6486 0.0151 -1.2088 6 6 5.3515 0.0017 -0.0310 7 6 6.8582 0.0027 -0.0621 8 8 7.3066 0.0181 -1.4189 9 6 4.6754 -0.0131 1.2161 10 6 5.2237 -0.0283 2.5026 11 6 4.3094 -0.0398 3.5219 12 6 4.6310 -0.0563 4.8833 13 1 5.6653 -0.0603 5.1939 14 6 3.6102 -0.0677 5.8445 15 7 2.3581 -0.0623 5.4685 16 14 4.0395 -0.0890 7.6624 17 1 5.5158 -0.0914 7.8224 18 1 3.4719 1.1159 8.3192 19 1 3.4720 -1.3088 8.2907 20 16 2.6775 -0.0310 2.8775 21 6 3.2725 -0.0132 1.2215 22 1 2.7228 0.0252 -2.1412 23 1 5.1811 0.0266 -2.1484 24 1 7.2317 0.8869 0.4544 25 1 7.2324 -0.8930 0.4336 26 1 8.2688 0.0200 -1.5151 27 1 6.2891 -0.0262 2.6792 28 1 1.6520 -0.0698 6.1335 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396217487.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:38 Heat of formation + Delta-G solvation = -9.641785 kcal Electronic energy + Delta-G solvation = -15781.279921 eV Core-core repulsion = 13080.323832 eV Total energy + Delta-G solvation = -2700.956088 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.80282 -36.50734 -35.89408 -34.95252 -33.25344 -30.99759 -29.26562 -26.48864 -25.10391 -22.52665 -21.45894 -19.82217 -18.35596 -17.09750 -16.96584 -15.84642 -15.36082 -14.55440 -14.37092 -13.95736 -13.88976 -13.35770 -13.10137 -12.79925 -12.35036 -12.15996 -12.01817 -11.63641 -11.62698 -11.48510 -11.31321 -10.61439 -10.53227 -10.25823 -10.16677 -9.95897 -9.51125 -9.23616 -8.38681 -7.58965 -7.33952 -6.57785 -4.84970 1.41970 2.12927 2.67498 2.76958 2.84862 3.03797 3.21172 3.27991 3.46470 3.65807 3.82045 4.52488 4.56544 4.67378 4.87448 5.55692 5.68435 5.90802 5.92572 5.98316 6.39808 6.52035 6.53741 6.77970 6.98473 7.14869 7.17814 7.29258 7.56331 7.68117 7.81716 7.90251 8.09156 8.13505 8.23845 9.49876 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.020498 B = 0.007340 C = 0.005420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.662473 B = 3813.959304 C = 5164.477796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C 0.270 3.730 3 C 0.020 3.980 4 C -0.142 4.142 5 C -0.089 4.089 6 C -0.106 4.106 7 C 0.128 3.872 8 O -0.573 6.573 9 C 0.028 3.972 10 C -0.366 4.366 11 C 0.055 3.945 12 C -0.376 4.376 13 H 0.103 0.897 14 C 0.052 3.948 15 N -0.771 5.771 16 Si 0.940 3.060 17 H -0.254 1.254 18 H -0.266 1.266 19 H -0.266 1.266 20 S 0.153 5.847 21 C -0.226 4.226 22 H 0.115 0.885 23 H 0.124 0.876 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.374 0.626 27 H 0.111 0.889 28 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.586 0.031 -2.086 6.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.126 5.126 2 C -0.044 4.044 3 C 0.012 3.988 4 C -0.165 4.165 5 C -0.109 4.109 6 C -0.108 4.108 7 C 0.051 3.949 8 O -0.378 6.378 9 C 0.019 3.981 10 C -0.390 4.390 11 C -0.065 4.065 12 C -0.409 4.409 13 H 0.121 0.879 14 C -0.171 4.171 15 N -0.396 5.396 16 Si 0.763 3.237 17 H -0.177 1.177 18 H -0.191 1.191 19 H -0.191 1.191 20 S 0.414 5.586 21 C -0.344 4.344 22 H 0.133 0.867 23 H 0.142 0.858 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.220 0.780 27 H 0.128 0.872 28 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.536 0.025 -1.414 2.904 hybrid contribution 2.550 -0.004 0.294 2.567 sum 5.086 0.022 -1.120 5.208 Atomic orbital electron populations 1.81092 1.12284 1.10503 1.08673 1.26075 0.93051 0.92755 0.92504 1.15275 0.82791 1.07603 0.93132 1.20536 0.94101 1.07002 0.94838 1.20235 0.92648 1.00464 0.97585 1.19517 0.92986 1.06027 0.92312 1.20761 0.92421 0.99769 0.81963 1.86442 1.26425 1.97827 1.27121 1.17594 0.90817 0.96946 0.92706 1.19510 0.98143 1.32044 0.89327 1.21459 0.94218 0.94241 0.96538 1.19433 0.95561 1.37102 0.88816 0.87935 1.26392 0.94090 0.92269 1.04318 1.68561 1.00981 1.31740 1.38345 0.85677 0.80562 0.79227 0.78266 1.17736 1.19110 1.19115 1.85196 1.06983 1.77759 0.88644 1.23676 0.97179 1.13396 1.00115 0.86687 0.85784 0.92840 0.92844 0.78023 0.87152 0.88229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -9.73 18.54 41.84 0.78 -8.95 15 2 C 0.27 5.69 15.05 -22.47 -0.34 5.35 15 3 C 0.02 0.43 5.76 -106.53 -0.61 -0.19 15 4 C -0.14 -2.62 9.74 -39.11 -0.38 -3.00 15 5 C -0.09 -1.63 9.31 -39.88 -0.37 -2.00 15 6 C -0.11 -2.06 5.96 -103.62 -0.62 -2.68 15 7 C 0.13 2.02 6.87 36.00 0.25 2.27 15 8 O -0.57 -7.91 12.08 -35.23 -0.43 -8.33 15 9 C 0.03 0.61 5.82 -107.13 -0.62 -0.01 15 10 C -0.37 -8.39 9.70 -39.45 -0.38 -8.77 15 11 C 0.06 1.33 6.11 -39.44 -0.24 1.09 15 12 C -0.38 -8.65 9.27 -38.22 -0.35 -9.01 15 13 H 0.10 2.20 7.85 -52.49 -0.41 1.79 15 14 C 0.05 1.11 5.50 -17.28 -0.10 1.02 15 15 N -0.77 -17.41 10.58 55.56 0.59 -16.82 15 16 Si 0.94 16.01 29.56 -169.99 -5.03 10.98 15 17 H -0.25 -4.23 7.11 56.52 0.40 -3.83 15 18 H -0.27 -4.49 7.11 56.52 0.40 -4.09 15 19 H -0.27 -4.50 7.11 56.52 0.40 -4.09 15 20 S 0.15 3.68 19.81 -107.50 -2.13 1.55 15 21 C -0.23 -5.18 6.34 -37.76 -0.24 -5.42 15 22 H 0.12 1.81 8.06 -52.48 -0.42 1.38 15 23 H 0.12 2.06 6.92 -52.48 -0.36 1.70 15 24 H 0.05 0.81 8.14 -51.93 -0.42 0.39 15 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 15 26 H 0.37 3.14 9.12 45.56 0.42 3.55 15 27 H 0.11 2.35 7.90 -52.49 -0.41 1.94 15 28 H 0.30 6.15 8.29 -40.82 -0.34 5.81 15 LS Contribution 271.72 15.07 4.09 4.09 Total: -1.00 -26.60 271.72 -7.31 -33.90 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -1.18 Total: 4.92 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: -4.01 Total: -21.35 kcal Atomic # 7 Polarization: -27.13 SS G_CDS: 1.36 Total: -25.77 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: -0.43 Total: -8.33 kcal Atomic # 14 Polarization: 16.01 SS G_CDS: -5.03 Total: 10.98 kcal Atomic # 16 Polarization: 3.68 SS G_CDS: -2.13 Total: 1.55 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -26.60 -7.31 -33.90 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396217487.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.261 kcal (2) G-P(sol) polarization free energy of solvation -26.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds