Wall clock time and date at job start Mon Mar 30 2020 06:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39285 * 119.97016 * 90.66533 * 3 2 1 5 5 C 1.38474 * 120.06287 * 180.02562 * 4 3 2 6 6 C 1.37164 * 120.73635 * 359.97438 * 5 4 3 7 7 C 1.50699 * 119.64709 * 180.02562 * 6 5 4 8 8 O 1.42908 * 109.46907 * 359.97438 * 7 6 5 9 9 C 1.41872 * 120.70735 * 0.02562 * 6 5 4 10 10 C 1.39854 * 128.45386 * 179.97438 * 9 6 5 11 11 C 1.36925 * 115.02874 * 179.97438 * 10 9 6 12 12 C 1.39898 * 124.82540 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00101 * 0.02562 * 12 11 10 14 14 C 1.40214 * 119.99630 * 180.02562 * 12 11 10 15 15 N 1.30738 * 120.00205 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99751 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46986 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47014 * 119.99659 * 16 14 12 19 19 H 1.48492 * 109.47129 * 239.99771 * 16 14 12 20 20 S 1.75456 * 110.34108 * 359.97438 * 11 10 9 21 21 C 1.40289 * 118.68364 * 359.97438 * 9 6 5 22 22 H 1.08003 * 119.96805 * 359.97438 * 4 3 2 23 23 H 1.08005 * 119.63337 * 180.02562 * 5 4 3 24 24 H 1.09000 * 109.47602 * 119.99983 * 7 6 5 25 25 H 1.09001 * 109.47202 * 240.00680 * 7 6 5 26 26 H 0.96701 * 113.99595 * 179.97438 * 8 7 6 27 27 H 1.07996 * 122.48950 * 0.25892 * 10 9 6 28 28 H 0.96996 * 120.00365 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2638 0.0150 -1.2065 5 6 4.6486 0.0151 -1.2088 6 6 5.3515 0.0017 -0.0310 7 6 6.8582 0.0027 -0.0621 8 8 7.3066 0.0181 -1.4189 9 6 4.6754 -0.0131 1.2161 10 6 5.2237 -0.0283 2.5026 11 6 4.3094 -0.0398 3.5219 12 6 4.6310 -0.0563 4.8833 13 1 5.6653 -0.0603 5.1939 14 6 3.6102 -0.0677 5.8445 15 7 2.3581 -0.0623 5.4685 16 14 4.0395 -0.0890 7.6624 17 1 5.5158 -0.0914 7.8224 18 1 3.4719 1.1159 8.3192 19 1 3.4720 -1.3088 8.2907 20 16 2.6775 -0.0310 2.8775 21 6 3.2725 -0.0132 1.2215 22 1 2.7228 0.0252 -2.1412 23 1 5.1811 0.0266 -2.1484 24 1 7.2317 0.8869 0.4544 25 1 7.2324 -0.8930 0.4336 26 1 8.2688 0.0200 -1.5151 27 1 6.2891 -0.0262 2.6792 28 1 1.6520 -0.0698 6.1335 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396217487.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:38 Heat of formation + Delta-G solvation = -24.909623 kcal Electronic energy + Delta-G solvation = -15781.941984 eV Core-core repulsion = 13080.323832 eV Total energy + Delta-G solvation = -2701.618151 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.36526 -37.90280 -37.37710 -36.56594 -34.88497 -32.48988 -30.92061 -27.97435 -26.68132 -24.15513 -22.96142 -21.44194 -20.06712 -18.68942 -18.17640 -17.41132 -16.87195 -15.89338 -15.79420 -15.58816 -15.39110 -14.98525 -14.64609 -14.32238 -13.93365 -13.80937 -13.57207 -13.20873 -13.09720 -12.97315 -12.89906 -12.03408 -11.98776 -11.80619 -11.71674 -11.17060 -11.07177 -10.99730 -9.97754 -9.26517 -8.94329 -8.33981 -6.56508 -0.17176 0.47870 1.24029 1.29597 1.36831 1.56339 1.60669 1.68625 1.84774 2.11955 2.17376 2.88022 3.02922 3.22057 3.47687 4.18139 4.29903 4.48634 4.58029 4.70949 4.81152 4.89927 4.94227 5.24381 5.42685 5.49458 5.58426 5.68609 5.92969 6.04468 6.18462 6.43127 6.46751 6.53164 7.04240 7.92563 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.020498 B = 0.007340 C = 0.005420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.662473 B = 3813.959304 C = 5164.477796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C 0.279 3.721 3 C 0.000 4.000 4 C -0.116 4.116 5 C -0.090 4.090 6 C -0.102 4.102 7 C 0.134 3.866 8 O -0.579 6.579 9 C 0.007 3.993 10 C -0.377 4.377 11 C 0.030 3.970 12 C -0.405 4.405 13 H 0.111 0.889 14 C 0.016 3.984 15 N -0.803 5.803 16 Si 1.012 2.988 17 H -0.246 1.246 18 H -0.262 1.262 19 H -0.262 1.262 20 S 0.109 5.891 21 C -0.245 4.245 22 H 0.150 0.850 23 H 0.151 0.849 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.400 0.600 27 H 0.121 0.879 28 H 0.311 0.689 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.135 0.044 -3.099 8.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.143 5.143 2 C -0.035 4.035 3 C -0.008 4.008 4 C -0.139 4.139 5 C -0.110 4.110 6 C -0.105 4.105 7 C 0.056 3.944 8 O -0.388 6.388 9 C -0.001 4.001 10 C -0.402 4.402 11 C -0.089 4.089 12 C -0.438 4.438 13 H 0.129 0.871 14 C -0.203 4.203 15 N -0.429 5.429 16 Si 0.831 3.169 17 H -0.169 1.169 18 H -0.187 1.187 19 H -0.187 1.187 20 S 0.369 5.631 21 C -0.362 4.362 22 H 0.167 0.833 23 H 0.169 0.831 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.250 0.750 27 H 0.138 0.862 28 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.109 0.038 -2.456 4.787 hybrid contribution 2.135 -0.005 0.358 2.165 sum 6.244 0.033 -2.098 6.588 Atomic orbital electron populations 1.81087 1.12682 1.11337 1.09185 1.26135 0.93075 0.92228 0.92034 1.15444 0.82669 1.09269 0.93456 1.21006 0.94492 1.03219 0.95144 1.20592 0.92620 0.99537 0.98246 1.19995 0.95436 1.03570 0.91519 1.20607 0.89969 1.00527 0.83249 1.86355 1.29111 1.97798 1.25513 1.17814 0.90805 0.97906 0.93605 1.19689 0.98449 1.32397 0.89624 1.21765 0.94053 0.95517 0.97610 1.19763 0.96526 1.38516 0.89026 0.87082 1.27337 0.93520 0.90998 1.08430 1.68637 1.02029 1.32283 1.39918 0.84645 0.80579 0.79240 0.72475 1.16920 1.18666 1.18675 1.85115 1.08408 1.78839 0.90703 1.23765 0.97859 1.14794 0.99814 0.83258 0.83102 0.92015 0.92025 0.74998 0.86161 0.87541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -20.14 18.54 19.00 0.35 -19.79 15 2 C 0.28 11.66 15.05 88.33 1.33 12.99 15 3 C 0.00 0.01 5.76 -21.10 -0.12 -0.12 15 4 C -0.12 -3.95 9.74 22.58 0.22 -3.73 15 5 C -0.09 -2.99 9.31 22.07 0.21 -2.79 15 6 C -0.10 -3.77 5.96 -19.22 -0.11 -3.89 15 7 C 0.13 3.84 6.87 71.24 0.49 4.33 15 8 O -0.58 -13.61 12.08 -148.98 -1.80 -15.41 15 9 C 0.01 0.30 5.82 -21.49 -0.13 0.17 15 10 C -0.38 -17.54 9.70 22.35 0.22 -17.33 15 11 C 0.03 1.49 6.11 22.36 0.14 1.62 15 12 C -0.41 -19.14 9.27 23.15 0.21 -18.93 15 13 H 0.11 4.84 7.85 -2.91 -0.02 4.82 15 14 C 0.02 0.69 5.50 85.34 0.47 1.16 15 15 N -0.80 -37.37 10.58 21.88 0.23 -37.14 15 16 Si 1.01 32.56 29.56 68.60 2.03 34.59 15 17 H -0.25 -7.52 7.11 99.48 0.71 -6.81 15 18 H -0.26 -8.18 7.11 99.48 0.71 -7.48 15 19 H -0.26 -8.19 7.11 99.48 0.71 -7.48 15 20 S 0.11 5.45 19.81 -56.49 -1.12 4.33 15 21 C -0.24 -11.34 6.34 23.45 0.15 -11.19 15 22 H 0.15 4.05 8.06 -2.91 -0.02 4.03 15 23 H 0.15 4.29 6.92 -2.91 -0.02 4.27 15 24 H 0.06 1.70 8.14 -2.39 -0.02 1.68 15 25 H 0.06 1.70 8.14 -2.39 -0.02 1.68 15 26 H 0.40 5.01 9.12 -74.06 -0.68 4.34 15 27 H 0.12 5.15 7.90 -2.91 -0.02 5.12 15 28 H 0.31 12.92 8.29 -92.71 -0.77 12.15 15 Total: -1.00 -58.10 271.72 3.31 -54.79 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: 0.55 Total: 16.31 kcal Atomic # 6 Polarization: -40.75 SS G_CDS: 3.07 Total: -37.69 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: 0.58 Total: -56.92 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -1.80 Total: -15.41 kcal Atomic # 14 Polarization: 32.56 SS G_CDS: 2.03 Total: 34.59 kcal Atomic # 16 Polarization: 5.45 SS G_CDS: -1.12 Total: 4.33 kcal Total: -58.10 3.31 -54.79 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396217487.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.880 kcal (2) G-P(sol) polarization free energy of solvation -58.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds