Wall clock time and date at job start Mon Mar 30 2020 06:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.40688 * 120.47371 * 22.08576 * 3 2 1 5 5 S 1.76030 * 130.38368 * 359.97438 * 4 3 2 6 6 C 1.75475 * 91.51528 * 179.97438 * 5 4 3 7 7 C 1.32457 * 110.79086 * 359.97438 * 6 5 4 8 8 C 1.40065 * 120.11248 * 179.97438 * 4 3 2 9 9 C 1.42031 * 119.51228 * 359.97438 * 8 4 3 10 10 C 1.50706 * 119.00839 * 179.97438 * 9 8 4 11 11 O 1.42900 * 109.46832 * 180.02562 * 10 9 8 12 12 C 1.35014 * 121.98174 * 359.73314 * 9 8 4 13 13 C 1.41286 * 120.57149 * 0.52779 * 12 9 8 14 14 C 1.40319 * 120.61656 * 179.75471 * 13 12 9 15 15 H 1.08008 * 119.99607 * 154.65916 * 14 13 12 16 16 C 1.40249 * 120.00577 * 334.39308 * 14 13 12 17 17 N 1.30671 * 119.99459 * 343.36514 * 16 14 13 18 18 Si 1.86795 * 120.00694 * 163.36791 * 16 14 13 19 19 H 1.48503 * 109.46875 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47396 * 119.99831 * 18 16 14 21 21 H 1.48502 * 109.47459 * 240.00061 * 18 16 14 22 22 H 1.07996 * 124.60520 * 180.02562 * 6 5 4 23 23 H 1.07999 * 122.03561 * 179.97438 * 7 6 5 24 24 H 1.09001 * 109.46911 * 300.00139 * 10 9 8 25 25 H 1.08999 * 109.47085 * 60.00197 * 10 9 8 26 26 H 0.96702 * 113.99491 * 180.02562 * 11 10 9 27 27 H 1.08002 * 119.71565 * 180.28771 * 12 9 8 28 28 H 0.97005 * 119.99597 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2820 -1.1226 -0.4559 5 16 2.7054 -2.6640 -1.0806 6 6 4.3476 -3.2364 -1.3146 7 6 5.2240 -2.3156 -0.9425 8 6 4.6826 -1.1136 -0.4531 9 6 5.3739 0.0365 0.0123 10 6 6.8810 0.0337 0.0109 11 8 7.3601 1.2815 0.5165 12 6 4.7216 1.1341 0.4514 13 6 3.3094 1.1702 0.4727 14 6 2.6305 2.3084 0.9336 15 1 1.6276 2.5151 0.5900 16 6 3.2520 3.1747 1.8448 17 7 4.3035 2.7772 2.5110 18 14 2.5767 4.8966 2.1062 19 1 1.3893 5.0997 1.2378 20 1 2.1846 5.0639 3.5287 21 1 3.6196 5.8953 1.7595 22 1 4.6083 -4.2073 -1.7091 23 1 6.2895 -2.4786 -1.0094 24 1 7.2434 -0.7772 0.6427 25 1 7.2431 -0.1093 -1.0072 26 1 8.3242 1.3506 0.5439 27 1 5.2842 1.9903 0.7930 28 1 4.7332 3.3763 3.1415 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396217592.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:27 Heat of formation + Delta-G solvation = -11.457185 kcal Electronic energy + Delta-G solvation = -16166.003207 eV Core-core repulsion = 13464.968397 eV Total energy + Delta-G solvation = -2701.034810 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.27690 -37.67235 -37.25500 -36.66487 -34.59604 -32.40359 -30.74640 -27.51209 -26.97178 -24.28039 -22.72712 -21.35812 -19.99734 -18.73439 -18.15510 -17.26413 -17.04757 -16.03400 -15.72184 -15.46053 -15.34460 -14.71606 -14.60814 -14.33884 -13.83021 -13.61208 -13.54514 -13.24689 -13.02553 -12.87980 -12.70948 -12.23367 -12.02939 -11.72567 -11.55719 -11.34558 -11.22054 -10.83883 -10.01124 -9.26485 -9.02108 -8.43727 -6.62987 0.13827 0.42653 0.85696 1.27726 1.35626 1.37681 1.50852 1.72413 2.01130 2.10048 2.41473 2.56522 3.46215 3.56083 3.63095 4.20388 4.39546 4.54559 4.64099 4.75901 4.82374 4.88112 4.92120 5.14735 5.27639 5.43068 5.71998 5.82661 5.92647 6.04149 6.28530 6.48233 6.65382 6.93350 7.16212 7.93067 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.018986 B = 0.008846 C = 0.006149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.455436 B = 3164.413011 C = 4552.515306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C 0.300 3.700 3 C -0.224 4.224 4 C -0.042 4.042 5 S 0.010 5.990 6 C -0.243 4.243 7 C -0.080 4.080 8 C -0.200 4.200 9 C -0.035 4.035 10 C 0.125 3.875 11 O -0.583 6.583 12 C -0.139 4.139 13 C 0.142 3.858 14 C -0.428 4.428 15 H 0.077 0.923 16 C 0.040 3.960 17 N -0.757 5.757 18 Si 0.986 3.014 19 H -0.265 1.265 20 H -0.257 1.257 21 H -0.246 1.246 22 H 0.190 0.810 23 H 0.165 0.835 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.395 0.605 27 H 0.140 0.860 28 H 0.308 0.692 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.693 -2.343 -2.318 11.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.212 5.212 2 C -0.007 4.007 3 C -0.237 4.237 4 C -0.160 4.160 5 S 0.271 5.729 6 C -0.375 4.375 7 C -0.109 4.109 8 C -0.207 4.207 9 C -0.038 4.038 10 C 0.048 3.952 11 O -0.391 6.391 12 C -0.158 4.158 13 C 0.134 3.866 14 C -0.454 4.454 15 H 0.095 0.905 16 C -0.185 4.185 17 N -0.377 5.377 18 Si 0.805 3.195 19 H -0.189 1.189 20 H -0.182 1.182 21 H -0.170 1.170 22 H 0.207 0.793 23 H 0.182 0.818 24 H 0.091 0.909 25 H 0.095 0.905 26 H 0.245 0.755 27 H 0.157 0.843 28 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 7.152 -2.907 -2.362 8.073 hybrid contribution 1.591 1.082 0.450 1.976 sum 8.743 -1.826 -1.912 9.134 Atomic orbital electron populations 1.80958 1.12843 1.10933 1.16445 1.25874 0.92831 0.91218 0.90813 1.16171 0.82765 0.96880 1.27907 1.22396 0.96802 0.95894 1.00861 1.83970 1.11237 1.09240 1.68433 1.25008 0.92801 1.05444 1.14295 1.19999 1.01437 0.90917 0.98534 1.17770 0.90436 0.97672 1.14803 1.19464 0.95425 0.92200 0.96737 1.20872 0.89461 0.86116 0.98741 1.86563 1.27984 1.36704 1.87845 1.20791 0.92580 0.99758 1.02660 1.18735 0.92571 0.88885 0.86442 1.20039 1.01566 1.04496 1.19316 0.90506 1.26959 0.94124 1.04352 0.93021 1.69720 1.15022 1.38514 1.14449 0.85073 0.79742 0.75139 0.79563 1.18881 1.18158 1.16964 0.79313 0.81787 0.90917 0.90477 0.75532 0.84282 0.87968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -27.91 18.54 19.00 0.35 -27.56 15 2 C 0.30 15.65 14.04 88.33 1.24 16.89 15 3 C -0.22 -11.37 5.97 -19.33 -0.12 -11.48 15 4 C -0.04 -1.90 6.34 23.31 0.15 -1.75 15 5 S 0.01 0.40 23.00 -56.49 -1.30 -0.90 15 6 C -0.24 -7.37 11.09 66.70 0.74 -6.63 15 7 C -0.08 -2.51 9.66 21.73 0.21 -2.30 15 8 C -0.20 -8.05 5.84 -21.31 -0.12 -8.17 15 9 C -0.04 -1.43 5.89 -19.66 -0.12 -1.55 15 10 C 0.13 3.67 6.77 71.24 0.48 4.16 15 11 O -0.58 -17.44 11.98 -148.98 -1.79 -19.22 15 12 C -0.14 -6.53 7.91 22.28 0.18 -6.36 15 13 C 0.14 7.26 5.72 -19.92 -0.11 7.15 15 14 C -0.43 -21.64 8.55 23.27 0.20 -21.44 15 15 H 0.08 3.99 7.38 -2.91 -0.02 3.97 15 16 C 0.04 1.78 5.16 85.35 0.44 2.22 15 17 N -0.76 -34.13 10.96 21.88 0.24 -33.89 15 18 Si 0.99 34.17 29.59 68.60 2.03 36.20 15 19 H -0.26 -9.59 7.11 99.48 0.71 -8.88 15 20 H -0.26 -8.49 7.11 99.48 0.71 -7.78 15 21 H -0.25 -7.81 7.11 99.48 0.71 -7.11 15 22 H 0.19 4.19 8.06 -2.91 -0.02 4.17 15 23 H 0.16 3.77 7.84 -2.91 -0.02 3.75 15 24 H 0.07 1.82 8.14 -2.39 -0.02 1.80 15 25 H 0.08 1.84 8.14 -2.39 -0.02 1.83 15 26 H 0.40 6.83 9.12 -74.06 -0.68 6.15 15 27 H 0.14 6.70 4.96 -2.91 -0.01 6.68 15 28 H 0.31 12.09 8.29 -92.70 -0.77 11.32 15 Total: -1.00 -61.99 270.26 3.26 -58.73 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.56 Total: 15.91 kcal Atomic # 6 Polarization: -32.43 SS G_CDS: 3.17 Total: -29.27 kcal Atomic # 7 Polarization: -62.04 SS G_CDS: 0.59 Total: -61.45 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: -1.79 Total: -19.22 kcal Atomic # 14 Polarization: 34.17 SS G_CDS: 2.03 Total: 36.20 kcal Atomic # 16 Polarization: 0.40 SS G_CDS: -1.30 Total: -0.90 kcal Total: -61.99 3.26 -58.73 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396217592.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.272 kcal (2) G-P(sol) polarization free energy of solvation -61.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds