Wall clock time and date at job start Mon Mar 30 2020 06:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.40444 * 120.05248 * 278.44897 * 3 2 1 5 5 C 1.35447 * 120.48877 * 180.02562 * 4 3 2 6 6 C 1.42205 * 120.70606 * 359.95722 * 5 4 3 7 7 C 1.39503 * 128.31393 * 179.72713 * 6 5 4 8 8 C 1.37140 * 115.08489 * 179.80896 * 7 6 5 9 9 C 1.39794 * 124.83726 * 180.20210 * 8 7 6 10 10 H 1.07994 * 119.99419 * 0.26682 * 9 8 7 11 11 C 1.40310 * 119.99784 * 180.26393 * 9 8 7 12 12 N 1.30668 * 120.00222 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99502 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.47475 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46751 * 120.00020 * 13 11 9 16 16 H 1.48503 * 109.47116 * 239.99926 * 13 11 9 17 17 S 1.75453 * 110.32577 * 0.45586 * 8 7 6 18 18 C 1.40553 * 118.81761 * 0.02562 * 6 5 4 19 19 C 1.39224 * 119.92588 * 0.02902 * 18 6 5 20 20 C 1.50698 * 119.91763 * 179.97438 * 19 18 6 21 21 O 1.42897 * 109.47257 * 269.97687 * 20 19 18 22 22 H 1.08002 * 119.75279 * 0.02935 * 4 3 2 23 23 H 1.08003 * 119.65127 * 179.97438 * 5 4 3 24 24 H 1.07998 * 122.45768 * 359.97438 * 7 6 5 25 25 H 0.97004 * 120.00267 * 179.97438 * 12 11 9 26 26 H 1.09005 * 109.47247 * 29.97777 * 20 19 18 27 27 H 1.08998 * 109.46965 * 149.97634 * 20 19 18 28 28 H 0.96693 * 114.00129 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2714 -0.1777 1.2024 5 6 4.6258 -0.1781 1.2127 6 6 5.3612 0.0008 0.0088 7 6 6.7453 0.0326 -0.1627 8 6 7.1670 0.2184 -1.4543 9 6 8.5044 0.2787 -1.8568 10 1 9.2932 0.1713 -1.1271 11 6 8.8217 0.4786 -3.2089 12 7 7.8672 0.6079 -4.0918 13 14 10.6088 0.5599 -3.7466 14 1 11.4900 0.3856 -2.5641 15 1 10.8798 -0.5205 -4.7287 16 1 10.8773 1.8785 -4.3746 17 16 5.7889 0.3769 -2.5286 18 6 4.6575 0.1789 -1.1948 19 6 3.2652 0.1784 -1.1920 20 6 2.5109 0.3700 -2.4825 21 8 2.2720 1.7631 -2.6923 22 1 2.7283 -0.3155 2.1257 23 1 5.1530 -0.3159 2.1452 24 1 7.4341 -0.0835 0.6609 25 1 8.0866 0.7465 -5.0265 26 1 3.0997 -0.0263 -3.3098 27 1 1.5588 -0.1578 -2.4285 28 1 1.7899 1.9612 -3.5067 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396217635.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:53 Heat of formation + Delta-G solvation = -24.256098 kcal Electronic energy + Delta-G solvation = -15854.390552 eV Core-core repulsion = 13152.800739 eV Total energy + Delta-G solvation = -2701.589812 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.40927 -37.97593 -37.40021 -36.62699 -34.87502 -32.52548 -31.08145 -27.87501 -26.88151 -24.53051 -22.59730 -21.28874 -19.70047 -19.47225 -18.48353 -17.41932 -16.82080 -16.43887 -15.93080 -15.06114 -14.98131 -14.77541 -14.71151 -14.48024 -13.97720 -13.77279 -13.53769 -13.28052 -13.17263 -13.07481 -12.87897 -12.20036 -11.96464 -11.93103 -11.65819 -11.13400 -11.06156 -10.87371 -10.26059 -9.26183 -8.98619 -8.29315 -6.60404 -0.17668 0.63566 1.11973 1.33347 1.39022 1.58541 1.66194 1.76074 1.90016 2.13289 2.26490 2.83879 3.16426 3.18214 3.57941 3.99265 4.03739 4.26935 4.37120 4.64785 4.82062 4.84840 4.99520 5.19989 5.34522 5.43290 5.60741 5.64754 5.88534 6.00321 6.17257 6.40048 6.47532 6.61944 6.82032 7.86924 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.035787 B = 0.006100 C = 0.005293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.218990 B = 4589.288325 C = 5288.629828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C 0.297 3.703 3 C -0.124 4.124 4 C -0.052 4.052 5 C -0.156 4.156 6 C 0.022 3.978 7 C -0.383 4.383 8 C 0.024 3.976 9 C -0.386 4.386 10 H 0.111 0.889 11 C 0.016 3.984 12 N -0.784 5.784 13 Si 1.013 2.987 14 H -0.250 1.250 15 H -0.258 1.258 16 H -0.260 1.260 17 S 0.140 5.860 18 C -0.282 4.282 19 C 0.022 3.978 20 C 0.116 3.884 21 O -0.575 6.575 22 H 0.148 0.852 23 H 0.137 0.863 24 H 0.115 0.885 25 H 0.317 0.683 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.431 -0.684 -1.536 2.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.163 5.163 2 C -0.015 4.015 3 C -0.130 4.130 4 C -0.074 4.074 5 C -0.176 4.176 6 C 0.014 3.986 7 C -0.407 4.407 8 C -0.096 4.096 9 C -0.419 4.419 10 H 0.129 0.871 11 C -0.205 4.205 12 N -0.409 5.409 13 Si 0.831 3.169 14 H -0.173 1.173 15 H -0.182 1.182 16 H -0.184 1.184 17 S 0.400 5.600 18 C -0.397 4.397 19 C 0.015 3.985 20 C 0.039 3.961 21 O -0.383 6.383 22 H 0.165 0.835 23 H 0.155 0.845 24 H 0.133 0.867 25 H 0.131 0.869 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -0.235 -0.383 -2.731 2.768 hybrid contribution 0.881 -0.239 0.791 1.208 sum 0.646 -0.623 -1.940 2.138 Atomic orbital electron populations 1.81124 1.12498 1.13463 1.09234 1.25652 0.92419 0.91404 0.92007 1.15468 0.83405 1.19280 0.94898 1.20471 0.93658 0.97224 0.96084 1.20693 0.93485 1.06744 0.96691 1.18458 0.93166 0.93810 0.93174 1.19825 0.93354 1.31337 0.96177 1.21964 0.97642 0.94735 0.95222 1.19908 0.91934 1.35215 0.94866 0.87110 1.27368 1.06401 0.91221 0.95491 1.68603 1.37082 1.29360 1.05848 0.84628 0.73311 0.79524 0.79440 1.17320 1.18248 1.18390 1.84664 0.92753 1.77286 1.05277 1.23503 0.97227 1.17286 1.01659 1.18951 0.90659 0.95418 0.93465 1.20984 0.97644 0.83275 0.94231 1.86547 1.80400 1.23205 1.48180 0.83474 0.84495 0.86737 0.86939 0.92010 0.92368 0.75329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -18.46 18.54 19.00 0.35 -18.11 15 2 C 0.30 10.95 13.76 88.33 1.22 12.16 15 3 C -0.12 -4.71 5.74 -21.26 -0.12 -4.83 15 4 C -0.05 -1.81 9.65 22.16 0.21 -1.60 15 5 C -0.16 -5.89 10.01 22.61 0.23 -5.66 15 6 C 0.02 1.01 5.86 -21.42 -0.13 0.89 15 7 C -0.38 -18.16 10.13 22.32 0.23 -17.94 15 8 C 0.02 1.19 6.11 22.39 0.14 1.33 15 9 C -0.39 -17.56 9.27 23.15 0.21 -17.34 15 10 H 0.11 4.70 7.85 -2.91 -0.02 4.68 15 11 C 0.02 0.67 5.50 85.37 0.47 1.14 15 12 N -0.78 -33.36 10.58 21.89 0.23 -33.13 15 13 Si 1.01 30.26 29.56 68.60 2.03 32.29 15 14 H -0.25 -7.28 7.11 99.48 0.71 -6.58 15 15 H -0.26 -7.39 7.11 99.48 0.71 -6.68 15 16 H -0.26 -7.49 7.11 99.48 0.71 -6.78 15 17 S 0.14 6.53 19.39 -56.49 -1.10 5.44 15 18 C -0.28 -12.82 6.29 23.07 0.15 -12.68 15 19 C 0.02 0.91 5.57 -19.39 -0.11 0.80 15 20 C 0.12 4.08 6.61 71.24 0.47 4.55 15 21 O -0.57 -19.62 13.64 -148.98 -2.03 -21.65 15 22 H 0.15 4.02 8.06 -2.91 -0.02 4.00 15 23 H 0.14 4.38 8.06 -2.91 -0.02 4.36 15 24 H 0.11 5.13 8.06 -2.91 -0.02 5.11 15 25 H 0.32 11.73 8.29 -92.71 -0.77 10.96 15 26 H 0.06 2.10 7.56 -2.38 -0.02 2.08 15 27 H 0.06 1.87 7.06 -2.39 -0.02 1.85 15 28 H 0.40 8.91 9.12 -74.06 -0.68 8.23 15 Total: -1.00 -56.11 271.59 3.00 -53.11 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: 0.55 Total: 21.23 kcal Atomic # 6 Polarization: -42.14 SS G_CDS: 2.96 Total: -39.18 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: 0.58 Total: -51.24 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -2.03 Total: -21.65 kcal Atomic # 14 Polarization: 30.26 SS G_CDS: 2.03 Total: 32.29 kcal Atomic # 16 Polarization: 6.53 SS G_CDS: -1.10 Total: 5.44 kcal Total: -56.11 3.00 -53.11 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396217635.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.854 kcal (2) G-P(sol) polarization free energy of solvation -56.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds