Wall clock time and date at job start Mon Mar 30 2020 06:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39045 * 120.01817 * 342.68698 * 3 2 1 5 5 C 1.38190 * 120.09033 * 179.97438 * 4 3 2 6 6 C 1.37856 * 120.38797 * 0.02562 * 5 4 3 7 7 C 1.50692 * 119.63913 * 180.02562 * 6 5 4 8 8 O 1.42903 * 109.47226 * 0.02562 * 7 6 5 9 9 C 1.39804 * 120.71841 * 0.02562 * 6 5 4 10 10 S 1.75810 * 130.13632 * 179.97438 * 9 6 5 11 11 C 1.69983 * 93.20494 * 180.02562 * 10 9 6 12 12 C 1.36591 * 111.89536 * 359.97438 * 11 10 9 13 13 C 1.40917 * 123.29020 * 180.02562 * 12 11 10 14 14 H 1.08006 * 120.00127 * 154.41546 * 13 12 11 15 15 C 1.39699 * 120.00194 * 334.41835 * 13 12 11 16 16 N 1.31079 * 119.99819 * 350.16230 * 15 13 12 17 17 Si 1.86802 * 120.00096 * 170.16519 * 15 13 12 18 18 H 1.48498 * 109.47336 * 89.99668 * 17 15 13 19 19 H 1.48507 * 109.46854 * 210.00089 * 17 15 13 20 20 H 1.48504 * 109.46992 * 329.99385 * 17 15 13 21 21 C 1.39275 * 119.70127 * 359.65232 * 9 6 5 22 22 H 1.08010 * 119.95539 * 0.02562 * 4 3 2 23 23 H 1.08000 * 119.80820 * 180.02562 * 5 4 3 24 24 H 1.09005 * 109.47037 * 120.00084 * 7 6 5 25 25 H 1.09000 * 109.47466 * 239.99857 * 7 6 5 26 26 H 0.96703 * 114.00119 * 179.97438 * 8 7 6 27 27 H 1.08005 * 124.05373 * 179.97438 * 11 10 9 28 28 H 0.96996 * 119.99827 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2641 -1.1484 0.3583 5 6 4.6460 -1.1496 0.3583 6 6 5.3443 -0.0149 0.0047 7 6 6.8511 -0.0352 0.0100 8 8 7.3087 -1.3281 0.4114 9 6 4.6698 1.1545 -0.3588 10 16 5.3004 2.7215 -0.8463 11 6 3.7502 3.3878 -1.0523 12 6 2.7657 2.4837 -0.7712 13 6 1.3917 2.7826 -0.8638 14 1 0.6778 1.9917 -1.0410 15 6 0.9530 4.1018 -0.7266 16 7 1.7851 5.0305 -0.3226 17 14 -0.8195 4.5422 -1.1188 18 1 -1.6472 4.4016 0.1061 19 1 -0.8856 5.9446 -1.6027 20 1 -1.3348 3.6305 -2.1717 21 6 3.2773 1.1724 -0.3712 22 1 2.7240 -2.0416 0.6362 23 1 5.1821 -2.0448 0.6370 24 1 7.2210 0.1861 -0.9913 25 1 7.2222 0.7150 0.7083 26 1 8.2715 -1.4141 0.4371 27 1 3.5658 4.4042 -1.3677 28 1 1.4804 5.9464 -0.2270 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396218066.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:34 Heat of formation + Delta-G solvation = 10.940254 kcal Electronic energy + Delta-G solvation = -16075.744025 eV Core-core repulsion = 13375.680441 eV Total energy + Delta-G solvation = -2700.063584 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.21350 -36.91413 -35.59755 -34.96889 -32.40220 -31.39852 -28.44712 -26.81318 -25.44425 -22.68080 -21.76817 -19.66343 -18.72446 -17.23042 -16.65419 -15.61961 -15.05331 -14.91109 -14.89431 -14.32381 -13.85518 -13.39231 -13.05009 -12.81257 -12.21685 -12.13958 -11.96417 -11.61065 -11.38660 -11.28840 -11.01160 -10.81760 -10.54140 -10.18756 -10.16825 -10.02306 -9.52034 -9.23736 -8.47205 -7.59004 -6.84296 -6.71222 -4.38675 1.19721 1.73992 2.60966 2.96542 3.08638 3.16167 3.43740 3.44817 3.64173 3.76169 3.98758 4.25141 4.48551 4.62960 5.15816 5.18266 5.37751 5.47707 5.57375 5.62980 6.03909 6.18481 6.48365 6.65148 6.79451 6.84824 7.14644 7.26424 7.57917 7.63094 7.85953 8.23624 8.35415 8.69166 8.81914 10.23959 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.025415 B = 0.007687 C = 0.005986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.437990 B = 3641.736129 C = 4676.695272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C 0.278 3.722 3 C 0.002 3.998 4 C -0.089 4.089 5 C -0.108 4.108 6 C -0.043 4.043 7 C 0.117 3.883 8 O -0.569 6.569 9 C -0.145 4.145 10 S 0.053 5.947 11 C -0.339 4.339 12 C 0.073 3.927 13 C -0.437 4.437 14 H 0.080 0.920 15 C 0.072 3.928 16 N -0.799 5.799 17 Si 0.907 3.093 18 H -0.270 1.270 19 H -0.276 1.276 20 H -0.261 1.261 21 C -0.017 4.017 22 H 0.127 0.873 23 H 0.137 0.863 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.379 0.621 27 H 0.163 0.837 28 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.608 -6.837 0.536 11.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.113 5.113 2 C -0.036 4.036 3 C -0.003 4.003 4 C -0.113 4.113 5 C -0.128 4.128 6 C -0.049 4.049 7 C 0.039 3.961 8 O -0.374 6.374 9 C -0.260 4.260 10 S 0.317 5.683 11 C -0.475 4.475 12 C 0.064 3.936 13 C -0.470 4.470 14 H 0.098 0.902 15 C -0.144 4.144 16 N -0.426 5.426 17 Si 0.732 3.268 18 H -0.195 1.195 19 H -0.201 1.201 20 H -0.185 1.185 21 C -0.030 4.030 22 H 0.145 0.855 23 H 0.155 0.845 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.226 0.774 27 H 0.180 0.820 28 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.585 -5.961 0.399 10.459 hybrid contribution -1.322 0.165 0.045 1.333 sum 7.263 -5.797 0.445 9.303 Atomic orbital electron populations 1.81069 1.12232 1.08868 1.09115 1.25460 0.92618 0.92253 0.93294 1.15838 0.84203 0.94369 1.05898 1.20812 0.94234 0.96111 1.00176 1.20479 0.92748 0.98022 1.01578 1.19097 0.93586 0.92254 1.00009 1.20900 0.91512 0.84611 0.99035 1.86435 1.26803 1.32619 1.91544 1.22275 0.96386 0.98580 1.08775 1.81859 1.12309 1.00918 1.73259 1.24373 0.91686 1.06574 1.24878 1.17287 0.94621 0.86969 0.94706 1.19133 0.91542 0.93668 1.42624 0.90237 1.25711 0.99693 0.96145 0.92852 1.69839 1.36376 1.02561 1.33842 0.86293 0.82296 0.78273 0.79938 1.19474 1.20066 1.18527 1.19594 0.91307 0.94246 0.97859 0.85549 0.84550 0.92039 0.91996 0.77431 0.81978 0.91124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -9.94 17.82 41.84 0.75 -9.20 15 2 C 0.28 6.03 12.82 -22.47 -0.29 5.74 15 3 C 0.00 0.04 5.78 -106.27 -0.61 -0.58 15 4 C -0.09 -1.46 9.72 -39.30 -0.38 -1.85 15 5 C -0.11 -1.70 9.34 -39.74 -0.37 -2.07 15 6 C -0.04 -0.72 5.91 -104.18 -0.62 -1.33 15 7 C 0.12 1.51 7.08 36.00 0.25 1.77 15 8 O -0.57 -6.35 12.09 -35.23 -0.43 -6.78 15 9 C -0.14 -2.91 6.28 -38.61 -0.24 -3.15 15 10 S 0.05 1.06 22.62 -107.50 -2.43 -1.37 15 11 C -0.34 -8.41 9.49 30.14 0.29 -8.12 15 12 C 0.07 1.88 5.66 -106.23 -0.60 1.28 15 13 C -0.44 -11.75 8.38 -38.02 -0.32 -12.07 15 14 H 0.08 2.14 5.35 -52.48 -0.28 1.86 15 15 C 0.07 1.87 5.36 -17.33 -0.09 1.78 15 16 N -0.80 -20.95 10.92 55.54 0.61 -20.34 15 17 Si 0.91 20.18 29.57 -169.99 -5.03 15.15 15 18 H -0.27 -6.02 7.11 56.52 0.40 -5.62 15 19 H -0.28 -5.85 7.11 56.52 0.40 -5.45 15 20 H -0.26 -5.87 7.11 56.52 0.40 -5.47 15 21 C -0.02 -0.39 6.01 -104.85 -0.63 -1.02 15 22 H 0.13 1.69 8.06 -52.48 -0.42 1.27 15 23 H 0.14 1.86 6.95 -52.49 -0.36 1.50 15 24 H 0.06 0.74 8.14 -51.93 -0.42 0.31 15 25 H 0.06 0.76 8.14 -51.93 -0.42 0.33 15 26 H 0.38 2.25 9.12 45.56 0.42 2.67 15 27 H 0.16 4.29 6.44 -52.48 -0.34 3.95 15 28 H 0.28 6.70 8.30 -40.82 -0.34 6.36 15 LS Contribution 266.66 15.07 4.02 4.02 Total: -1.00 -29.33 266.66 -7.10 -36.43 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -0.97 Total: 1.72 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: -3.62 Total: -19.62 kcal Atomic # 7 Polarization: -30.89 SS G_CDS: 1.35 Total: -29.54 kcal Atomic # 8 Polarization: -6.35 SS G_CDS: -0.43 Total: -6.78 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.03 Total: 15.15 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -2.43 Total: -1.37 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -29.33 -7.10 -36.43 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396218066.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.368 kcal (2) G-P(sol) polarization free energy of solvation -29.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds