Wall clock time and date at job start Mon Mar 30 2020 06:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.38847 * 120.32420 * 50.20556 * 3 2 1 5 5 C 1.38317 * 120.27763 * 180.02562 * 4 3 2 6 6 C 1.37771 * 121.08972 * 359.97404 * 5 4 3 7 7 C 1.39448 * 121.34848 * 0.02562 * 6 5 4 8 8 S 1.76016 * 130.27774 * 180.27674 * 7 6 5 9 9 C 1.75474 * 91.74882 * 180.02562 * 8 7 6 10 10 C 1.39743 * 124.87286 * 179.97438 * 9 8 7 11 11 H 1.08000 * 119.99934 * 172.49396 * 10 9 8 12 12 C 1.40333 * 120.00208 * 352.21170 * 10 9 8 13 13 N 1.30658 * 119.99684 * 6.29932 * 12 10 9 14 14 Si 1.86800 * 120.00195 * 186.29562 * 12 10 9 15 15 H 1.48501 * 109.46995 * 94.98967 * 14 12 10 16 16 H 1.48498 * 109.47225 * 214.99471 * 14 12 10 17 17 H 1.48497 * 109.46974 * 334.99220 * 14 12 10 18 18 C 1.37273 * 110.25343 * 359.69791 * 9 8 7 19 19 C 1.50700 * 122.46679 * 180.25451 * 18 9 8 20 20 O 1.42904 * 109.47286 * 89.97916 * 19 18 9 21 21 C 1.39082 * 115.06276 * 0.23140 * 18 9 8 22 22 H 1.08003 * 119.86375 * 359.97343 * 4 3 2 23 23 H 1.07991 * 119.45521 * 179.97438 * 5 4 3 24 24 H 1.07998 * 119.32403 * 180.02562 * 6 5 4 25 25 H 0.97002 * 120.00178 * 179.97438 * 13 12 10 26 26 H 1.09003 * 109.46834 * 209.97150 * 19 18 9 27 27 H 1.08999 * 109.47419 * 329.97415 * 19 18 9 28 28 H 0.96698 * 113.99928 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2694 -0.7661 -0.9209 5 6 4.6526 -0.7652 -0.9197 6 6 5.3627 -0.0094 -0.0127 7 6 4.7161 0.7812 0.9367 8 16 5.3782 1.8302 2.1855 9 6 3.7733 2.2791 2.7348 10 6 3.5060 3.1578 3.7881 11 1 2.4920 3.4739 3.9835 12 6 4.5545 3.6247 4.5956 13 7 5.7920 3.3381 4.2898 14 14 4.1808 4.6561 6.1076 15 1 4.1229 3.7781 7.3038 16 1 5.2486 5.6719 6.2901 17 1 2.8737 5.3384 5.9306 18 6 2.8180 1.6482 1.9774 19 6 1.3420 1.8431 2.2106 20 8 0.8759 2.9399 1.4220 21 6 3.3127 0.8161 0.9787 22 1 2.7327 -1.3665 -1.6406 23 1 5.1846 -1.3668 -1.6416 24 1 6.4422 -0.0297 -0.0376 25 1 6.5168 3.6611 4.8478 26 1 0.8065 0.9374 1.9257 27 1 1.1653 2.0530 3.2655 28 1 -0.0682 3.1234 1.5226 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396218153.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:08 Heat of formation + Delta-G solvation = -18.858829 kcal Electronic energy + Delta-G solvation = -16204.657889 eV Core-core repulsion = 13503.302120 eV Total energy + Delta-G solvation = -2701.355769 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.12738 -37.84376 -37.29287 -36.50893 -34.95973 -31.79699 -30.97077 -28.49768 -26.59368 -24.02659 -23.47315 -20.84332 -19.81795 -18.92946 -18.21512 -17.38833 -16.94444 -16.20521 -15.92710 -15.51714 -14.88939 -14.71388 -14.63735 -14.12200 -14.01345 -13.76439 -13.62762 -13.29409 -13.13837 -12.86507 -12.77530 -12.07407 -12.02023 -11.94099 -11.52232 -11.09890 -10.99199 -10.73753 -10.09203 -9.24123 -9.04108 -8.28087 -6.64524 -0.10966 0.56038 1.26217 1.33245 1.36193 1.52330 1.71906 1.77283 1.92318 2.10225 2.16479 2.79953 3.19596 3.30572 3.96979 4.15745 4.28613 4.36974 4.51237 4.64067 4.76744 4.81627 5.04295 5.20403 5.31240 5.48458 5.66402 5.73455 5.78368 6.00362 6.19949 6.34693 6.47177 6.68917 6.96534 7.81776 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.023837 B = 0.008197 C = 0.006239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.374261 B = 3414.959590 C = 4487.128143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C 0.294 3.706 3 C -0.129 4.129 4 C -0.027 4.027 5 C -0.195 4.195 6 C -0.017 4.017 7 C -0.295 4.295 8 S 0.135 5.865 9 C 0.042 3.958 10 C -0.377 4.377 11 H 0.102 0.898 12 C 0.020 3.980 13 N -0.775 5.775 14 Si 1.009 2.991 15 H -0.254 1.254 16 H -0.255 1.255 17 H -0.257 1.257 18 C -0.371 4.371 19 C 0.173 3.827 20 O -0.585 6.585 21 C 0.055 3.945 22 H 0.147 0.853 23 H 0.160 0.840 24 H 0.135 0.865 25 H 0.319 0.681 26 H 0.028 0.972 27 H 0.036 0.964 28 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.087 -1.590 -0.019 3.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.170 5.170 2 C -0.016 4.016 3 C -0.135 4.135 4 C -0.049 4.049 5 C -0.215 4.215 6 C -0.040 4.040 7 C -0.409 4.409 8 S 0.396 5.604 9 C -0.078 4.078 10 C -0.410 4.410 11 H 0.120 0.880 12 C -0.202 4.202 13 N -0.400 5.400 14 Si 0.827 3.173 15 H -0.178 1.178 16 H -0.178 1.178 17 H -0.180 1.180 18 C -0.378 4.378 19 C 0.094 3.906 20 O -0.392 6.392 21 C 0.046 3.954 22 H 0.165 0.835 23 H 0.177 0.823 24 H 0.153 0.847 25 H 0.133 0.867 26 H 0.045 0.955 27 H 0.054 0.946 28 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 3.661 -1.186 0.289 3.859 hybrid contribution -1.824 0.104 0.379 1.866 sum 1.837 -1.082 0.667 2.234 Atomic orbital electron populations 1.81039 1.12649 1.11989 1.11313 1.25825 0.92932 0.91486 0.91375 1.16960 0.83185 1.09026 1.04368 1.21040 0.94939 0.94397 0.94543 1.20769 0.92919 1.04951 1.02902 1.20734 0.99897 0.91978 0.91347 1.23718 0.96647 1.11944 1.08550 1.84523 1.06062 1.43562 1.26225 1.21669 0.95125 0.95232 0.95794 1.19797 0.96996 1.17607 1.06637 0.88029 1.27324 0.93397 0.96563 1.02966 1.68652 1.01528 1.32864 1.36910 0.84717 0.80085 0.77564 0.74919 1.17839 1.17835 1.18020 1.18277 0.94222 1.15769 1.09485 1.20145 0.91001 0.87010 0.92410 1.86655 1.28982 1.53513 1.70002 1.18716 0.92128 0.92675 0.91922 0.83487 0.82281 0.84726 0.86736 0.95451 0.94550 0.77988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -21.22 17.86 19.00 0.34 -20.88 15 2 C 0.29 12.54 12.51 88.33 1.11 13.65 15 3 C -0.13 -5.40 5.95 -19.42 -0.12 -5.51 15 4 C -0.03 -0.88 9.72 22.43 0.22 -0.66 15 5 C -0.20 -5.85 9.97 22.18 0.22 -5.63 15 6 C -0.02 -0.59 10.00 22.45 0.22 -0.36 15 7 C -0.29 -12.97 6.47 23.10 0.15 -12.82 15 8 S 0.13 6.24 20.18 -56.49 -1.14 5.10 15 9 C 0.04 2.13 6.11 22.41 0.14 2.27 15 10 C -0.38 -18.02 8.77 23.14 0.20 -17.82 15 11 H 0.10 4.75 6.80 -2.91 -0.02 4.73 15 12 C 0.02 0.84 5.49 85.38 0.47 1.31 15 13 N -0.77 -33.11 10.63 21.90 0.23 -32.87 15 14 Si 1.01 31.53 29.57 68.60 2.03 33.56 15 15 H -0.25 -7.64 7.11 99.48 0.71 -6.94 15 16 H -0.25 -7.37 7.11 99.48 0.71 -6.66 15 17 H -0.26 -8.08 7.11 99.48 0.71 -7.38 15 18 C -0.37 -18.71 5.57 -19.89 -0.11 -18.82 15 19 C 0.17 8.02 6.17 71.24 0.44 8.46 15 20 O -0.59 -26.41 13.64 -148.98 -2.03 -28.45 15 21 C 0.06 2.62 5.99 -20.08 -0.12 2.50 15 22 H 0.15 3.79 8.06 -2.91 -0.02 3.76 15 23 H 0.16 3.37 8.06 -2.92 -0.02 3.34 15 24 H 0.13 3.93 8.06 -2.91 -0.02 3.90 15 25 H 0.32 11.78 8.29 -92.71 -0.77 11.01 15 26 H 0.03 1.27 5.06 -2.39 -0.01 1.25 15 27 H 0.04 1.63 7.00 -2.39 -0.02 1.61 15 28 H 0.37 13.03 9.12 -74.06 -0.68 12.35 15 Total: -1.00 -58.82 266.38 2.81 -56.02 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: 0.56 Total: 20.98 kcal Atomic # 6 Polarization: -36.27 SS G_CDS: 2.82 Total: -33.45 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: 0.57 Total: -53.76 kcal Atomic # 8 Polarization: -26.41 SS G_CDS: -2.03 Total: -28.45 kcal Atomic # 14 Polarization: 31.53 SS G_CDS: 2.03 Total: 33.56 kcal Atomic # 16 Polarization: 6.24 SS G_CDS: -1.14 Total: 5.10 kcal Total: -58.82 2.81 -56.02 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396218153.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.160 kcal (2) G-P(sol) polarization free energy of solvation -58.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds