Wall clock time and date at job start Mon Mar 30 2020 06:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.38570 * 120.48599 * 356.09689 * 3 2 1 5 5 C 1.39870 * 120.71882 * 180.26377 * 4 3 2 6 6 S 1.76146 * 129.63871 * 179.72763 * 5 4 3 7 7 C 1.75216 * 92.26401 * 180.02562 * 6 5 4 8 8 C 1.31797 * 111.53294 * 359.97438 * 7 6 5 9 9 C 1.50694 * 122.52444 * 179.97438 * 8 7 6 10 10 O 1.42900 * 109.47093 * 0.02664 * 9 8 7 11 11 C 1.40368 * 120.80929 * 359.72565 * 5 4 3 12 12 C 1.40549 * 119.89252 * 0.02562 * 11 5 4 13 13 C 1.39834 * 120.45184 * 359.97055 * 12 11 5 14 14 C 1.40734 * 120.45291 * 180.02562 * 13 12 11 15 15 H 1.08004 * 120.00637 * 206.44280 * 14 13 12 16 16 C 1.40125 * 119.99825 * 26.43801 * 14 13 12 17 17 N 1.30751 * 120.00008 * 199.05531 * 16 14 13 18 18 Si 1.86797 * 120.00040 * 19.05037 * 16 14 13 19 19 H 1.48504 * 109.47293 * 264.92406 * 18 16 14 20 20 H 1.48503 * 109.47029 * 24.92259 * 18 16 14 21 21 H 1.48498 * 109.47149 * 144.91872 * 18 16 14 22 22 H 1.08001 * 119.64640 * 359.96552 * 4 3 2 23 23 H 1.07997 * 124.23373 * 179.97438 * 7 6 5 24 24 H 1.09004 * 109.47326 * 120.02045 * 9 8 7 25 25 H 1.08998 * 109.47379 * 240.02087 * 9 8 7 26 26 H 0.96707 * 113.99882 * 180.02562 * 10 9 8 27 27 H 1.08001 * 119.77431 * 180.02562 * 12 11 5 28 28 H 0.97001 * 119.99981 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2716 -1.1904 0.0813 5 6 4.6703 -1.1951 0.0872 6 16 5.7890 -2.5519 0.1875 7 6 7.1853 -1.4956 0.1192 8 6 6.8301 -0.2296 0.0281 9 6 7.8353 0.8906 -0.0460 10 8 9.1568 0.3485 -0.0017 11 6 5.3936 0.0051 0.0052 12 6 4.7102 1.2301 -0.0835 13 6 3.3123 1.2628 -0.0915 14 6 2.6280 2.4894 -0.1809 15 1 1.6320 2.5831 0.2259 16 6 3.2391 3.5892 -0.7978 17 7 2.7964 4.7976 -0.5670 18 14 4.6864 3.3289 -1.9498 19 1 5.9551 3.4983 -1.1969 20 1 4.6269 1.9579 -2.5174 21 1 4.6276 4.3234 -3.0510 22 1 2.7341 -2.1250 0.1456 23 1 8.2088 -1.8388 0.1482 24 1 7.6992 1.4400 -0.9775 25 1 7.6907 1.5650 0.7981 26 1 9.8567 1.0144 -0.0448 27 1 5.2687 2.1523 -0.1469 28 1 3.2197 5.5589 -0.9938 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396218677.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:24 Heat of formation + Delta-G solvation = 7.634797 kcal Electronic energy + Delta-G solvation = -16065.284213 eV Core-core repulsion = 13365.077294 eV Total energy + Delta-G solvation = -2700.206919 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.75613 -37.06628 -35.62598 -34.62385 -33.45198 -30.87117 -29.12807 -27.01382 -25.46805 -22.94026 -21.60507 -19.40561 -18.23353 -17.62159 -17.39892 -15.95833 -15.41953 -14.93822 -14.83475 -14.04704 -13.99073 -13.27652 -13.05921 -12.89900 -12.81184 -12.29245 -12.02406 -11.78918 -11.61269 -11.52730 -11.15355 -10.92215 -10.59277 -10.36555 -10.17808 -9.96499 -9.80661 -9.39836 -8.67888 -7.73527 -7.40446 -7.13564 -4.88329 1.22642 2.19233 2.25895 2.57046 2.69897 2.83272 2.97343 3.07459 3.62633 3.65895 3.84261 4.23823 4.25300 5.01182 5.02546 5.31735 5.38011 5.54001 5.63067 5.65400 6.11217 6.18030 6.27168 6.57735 6.66948 6.73149 6.92092 7.05629 7.34565 7.45753 7.63691 7.86405 8.10479 8.27766 8.50220 9.58219 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.016447 B = 0.010015 C = 0.006490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.997759 B = 2795.170690 C = 4313.124754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C 0.294 3.706 3 C -0.124 4.124 4 C 0.020 3.980 5 C -0.248 4.248 6 S 0.019 5.981 7 C -0.156 4.156 8 C -0.112 4.112 9 C 0.136 3.864 10 O -0.572 6.572 11 C 0.011 3.989 12 C -0.227 4.227 13 C 0.125 3.875 14 C -0.407 4.407 15 H 0.100 0.900 16 C 0.082 3.918 17 N -0.770 5.770 18 Si 0.914 3.086 19 H -0.264 1.264 20 H -0.235 1.235 21 H -0.285 1.285 22 H 0.112 0.888 23 H 0.162 0.838 24 H 0.057 0.943 25 H 0.061 0.939 26 H 0.380 0.620 27 H 0.111 0.889 28 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.214 -4.250 -0.746 12.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.157 5.157 2 C -0.018 4.018 3 C -0.131 4.131 4 C -0.005 4.005 5 C -0.362 4.362 6 S 0.280 5.720 7 C -0.290 4.290 8 C -0.126 4.126 9 C 0.056 3.944 10 O -0.378 6.378 11 C 0.005 3.995 12 C -0.249 4.249 13 C 0.118 3.882 14 C -0.433 4.433 15 H 0.118 0.882 16 C -0.143 4.143 17 N -0.391 5.391 18 Si 0.739 3.261 19 H -0.190 1.190 20 H -0.158 1.158 21 H -0.212 1.212 22 H 0.130 0.870 23 H 0.179 0.821 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.226 0.774 27 H 0.129 0.871 28 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.897 -6.094 -0.606 10.801 hybrid contribution 1.498 2.238 -0.547 2.748 sum 10.395 -3.857 -1.153 11.147 Atomic orbital electron populations 1.81070 1.12397 1.09236 1.12962 1.25498 0.92425 0.91911 0.91941 1.16659 0.83540 0.93591 1.19306 1.19926 0.90592 0.95837 0.94127 1.21443 0.95948 0.94636 1.24193 1.83546 0.96122 1.09879 1.82485 1.24594 1.01928 0.95994 1.06439 1.19578 0.92517 0.94329 1.06154 1.20579 0.80503 0.92903 1.00404 1.86403 1.15555 1.38251 1.97551 1.18685 0.89644 0.93434 0.97743 1.20559 0.93184 0.94527 1.16655 1.18113 0.90569 0.90638 0.88831 1.19631 1.03321 0.91695 1.28689 0.88244 1.26404 0.97912 0.93946 0.96040 1.69633 1.37019 0.99893 1.32508 0.86259 0.79610 0.80919 0.79347 1.18982 1.15760 1.21212 0.86970 0.82082 0.92456 0.92066 0.77361 0.87128 0.89373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -11.00 18.54 41.84 0.78 -10.23 15 2 C 0.29 6.51 14.30 -22.47 -0.32 6.18 15 3 C -0.12 -2.67 5.92 -104.38 -0.62 -3.29 15 4 C 0.02 0.39 9.75 -38.85 -0.38 0.01 15 5 C -0.25 -4.85 6.46 -38.17 -0.25 -5.10 15 6 S 0.02 0.31 23.23 -107.50 -2.50 -2.19 15 7 C -0.16 -2.57 10.26 28.84 0.30 -2.28 15 8 C -0.11 -1.99 5.97 -103.59 -0.62 -2.61 15 9 C 0.14 2.00 7.24 36.00 0.26 2.26 15 10 O -0.57 -7.21 12.47 -35.23 -0.44 -7.65 15 11 C 0.01 0.23 5.99 -105.30 -0.63 -0.40 15 12 C -0.23 -4.86 6.96 -38.11 -0.27 -5.12 15 13 C 0.12 2.85 5.33 -104.89 -0.56 2.29 15 14 C -0.41 -9.92 9.07 -37.93 -0.34 -10.27 15 15 H 0.10 2.63 7.56 -52.48 -0.40 2.23 15 16 C 0.08 1.90 5.41 -17.30 -0.09 1.81 15 17 N -0.77 -18.28 13.92 55.56 0.77 -17.50 15 18 Si 0.91 18.17 24.46 -169.99 -4.16 14.01 15 19 H -0.26 -4.85 6.67 56.52 0.38 -4.48 15 20 H -0.23 -4.84 6.82 56.52 0.39 -4.45 15 21 H -0.28 -5.49 7.11 56.52 0.40 -5.09 15 22 H 0.11 1.90 8.06 -52.49 -0.42 1.48 15 23 H 0.16 2.38 7.40 -52.49 -0.39 1.99 15 24 H 0.06 0.82 8.14 -51.93 -0.42 0.40 15 25 H 0.06 0.86 8.14 -51.93 -0.42 0.43 15 26 H 0.38 2.79 9.12 45.56 0.42 3.21 15 27 H 0.11 2.29 4.23 -52.49 -0.22 2.07 15 28 H 0.30 6.22 8.29 -40.82 -0.34 5.88 15 LS Contribution 266.85 15.07 4.02 4.02 Total: -1.00 -26.29 266.85 -6.08 -32.37 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -1.03 Total: 3.67 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: -3.52 Total: -16.50 kcal Atomic # 7 Polarization: -29.28 SS G_CDS: 1.55 Total: -27.73 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: -0.44 Total: -7.65 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -4.16 Total: 14.01 kcal Atomic # 16 Polarization: 0.31 SS G_CDS: -2.50 Total: -2.19 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -26.29 -6.08 -32.37 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396218677.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.006 kcal (2) G-P(sol) polarization free energy of solvation -26.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds