Wall clock time and date at job start Mon Mar 30 2020 06:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.38570 * 120.48599 * 356.09689 * 3 2 1 5 5 C 1.39870 * 120.71882 * 180.26377 * 4 3 2 6 6 S 1.76146 * 129.63871 * 179.72763 * 5 4 3 7 7 C 1.75216 * 92.26401 * 180.02562 * 6 5 4 8 8 C 1.31797 * 111.53294 * 359.97438 * 7 6 5 9 9 C 1.50694 * 122.52444 * 179.97438 * 8 7 6 10 10 O 1.42900 * 109.47093 * 0.02664 * 9 8 7 11 11 C 1.40368 * 120.80929 * 359.72565 * 5 4 3 12 12 C 1.40549 * 119.89252 * 0.02562 * 11 5 4 13 13 C 1.39834 * 120.45184 * 359.97055 * 12 11 5 14 14 C 1.40734 * 120.45291 * 180.02562 * 13 12 11 15 15 H 1.08004 * 120.00637 * 206.44280 * 14 13 12 16 16 C 1.40125 * 119.99825 * 26.43801 * 14 13 12 17 17 N 1.30751 * 120.00008 * 199.05531 * 16 14 13 18 18 Si 1.86797 * 120.00040 * 19.05037 * 16 14 13 19 19 H 1.48504 * 109.47293 * 264.92406 * 18 16 14 20 20 H 1.48503 * 109.47029 * 24.92259 * 18 16 14 21 21 H 1.48498 * 109.47149 * 144.91872 * 18 16 14 22 22 H 1.08001 * 119.64640 * 359.96552 * 4 3 2 23 23 H 1.07997 * 124.23373 * 179.97438 * 7 6 5 24 24 H 1.09004 * 109.47326 * 120.02045 * 9 8 7 25 25 H 1.08998 * 109.47379 * 240.02087 * 9 8 7 26 26 H 0.96707 * 113.99882 * 180.02562 * 10 9 8 27 27 H 1.08001 * 119.77431 * 180.02562 * 12 11 5 28 28 H 0.97001 * 119.99981 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2716 -1.1904 0.0813 5 6 4.6703 -1.1951 0.0872 6 16 5.7890 -2.5519 0.1875 7 6 7.1853 -1.4956 0.1192 8 6 6.8301 -0.2296 0.0281 9 6 7.8353 0.8906 -0.0460 10 8 9.1568 0.3485 -0.0017 11 6 5.3936 0.0051 0.0052 12 6 4.7102 1.2301 -0.0835 13 6 3.3123 1.2628 -0.0915 14 6 2.6280 2.4894 -0.1809 15 1 1.6320 2.5831 0.2259 16 6 3.2391 3.5892 -0.7978 17 7 2.7964 4.7976 -0.5670 18 14 4.6864 3.3289 -1.9498 19 1 5.9551 3.4983 -1.1969 20 1 4.6269 1.9579 -2.5174 21 1 4.6276 4.3234 -3.0510 22 1 2.7341 -2.1250 0.1456 23 1 8.2088 -1.8388 0.1482 24 1 7.6992 1.4400 -0.9775 25 1 7.6907 1.5650 0.7981 26 1 9.8567 1.0144 -0.0448 27 1 5.2687 2.1523 -0.1469 28 1 3.2197 5.5589 -0.9938 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396218677.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:24 Heat of formation + Delta-G solvation = -8.982191 kcal Electronic energy + Delta-G solvation = -16066.004780 eV Core-core repulsion = 13365.077294 eV Total energy + Delta-G solvation = -2700.927486 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.27575 -38.33636 -37.20356 -36.21059 -34.99846 -32.52624 -30.67238 -28.34942 -26.99701 -24.51084 -23.22477 -20.84875 -19.82791 -19.17512 -18.65081 -17.29807 -17.01362 -16.40259 -15.93751 -15.63666 -15.42236 -14.88966 -14.63226 -14.53298 -14.36713 -13.87649 -13.63626 -13.31087 -13.20945 -12.93178 -12.73960 -12.47816 -12.12276 -11.73025 -11.65876 -11.46523 -11.16714 -10.88807 -10.21277 -9.32787 -9.11079 -8.57228 -6.64030 -0.32812 0.55721 0.86230 1.09362 1.24404 1.25895 1.40820 1.49566 1.86149 2.03698 2.20655 2.50585 3.22196 3.30926 3.33579 3.90515 4.01934 4.28799 4.49912 4.53971 4.56692 4.61492 4.86996 5.02416 5.08036 5.19768 5.33712 5.46539 5.72074 5.82587 6.06357 6.38361 6.51163 6.73351 6.92472 7.94591 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.016447 B = 0.010015 C = 0.006490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.997759 B = 2795.170690 C = 4313.124754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C 0.302 3.698 3 C -0.141 4.141 4 C 0.029 3.971 5 C -0.260 4.260 6 S 0.068 5.932 7 C -0.146 4.146 8 C -0.134 4.134 9 C 0.139 3.861 10 O -0.577 6.577 11 C 0.005 3.995 12 C -0.235 4.235 13 C 0.119 3.881 14 C -0.446 4.446 15 H 0.059 0.941 16 C 0.052 3.948 17 N -0.812 5.812 18 Si 0.959 3.041 19 H -0.235 1.235 20 H -0.247 1.247 21 H -0.275 1.275 22 H 0.140 0.860 23 H 0.185 0.815 24 H 0.062 0.938 25 H 0.067 0.933 26 H 0.403 0.597 27 H 0.117 0.883 28 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.365 -6.106 -1.082 15.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.180 5.180 2 C -0.009 4.009 3 C -0.148 4.148 4 C 0.004 3.996 5 C -0.374 4.374 6 S 0.329 5.671 7 C -0.280 4.280 8 C -0.147 4.147 9 C 0.059 3.941 10 O -0.387 6.387 11 C -0.002 4.002 12 C -0.257 4.257 13 C 0.112 3.888 14 C -0.474 4.474 15 H 0.078 0.922 16 C -0.169 4.169 17 N -0.435 5.435 18 Si 0.780 3.220 19 H -0.160 1.160 20 H -0.170 1.170 21 H -0.202 1.202 22 H 0.158 0.842 23 H 0.202 0.798 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.254 0.746 27 H 0.134 0.866 28 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 12.068 -7.947 -0.927 14.479 hybrid contribution 0.632 2.542 -0.375 2.646 sum 12.700 -5.405 -1.302 13.863 Atomic orbital electron populations 1.81050 1.12990 1.09988 1.13935 1.25690 0.92647 0.91243 0.91335 1.16820 0.83199 0.94258 1.20511 1.20182 0.90943 0.96051 0.92429 1.21956 0.96584 0.96519 1.22327 1.83452 0.94622 1.07600 1.81386 1.24953 1.03029 0.95581 1.04434 1.19762 0.91833 0.95892 1.07214 1.20468 0.80948 0.91783 1.00882 1.86330 1.15290 1.39518 1.97519 1.19021 0.91399 0.93067 0.96695 1.20602 0.92466 0.95598 1.17030 1.18235 0.91536 0.90406 0.88576 1.19489 1.02378 0.93617 1.31891 0.92234 1.27051 0.99926 0.93291 0.96593 1.69649 1.38929 1.00697 1.34211 0.85592 0.78164 0.80188 0.78063 1.15968 1.17010 1.20173 0.84238 0.79777 0.92018 0.91525 0.74592 0.86568 0.88384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -23.64 18.54 19.00 0.35 -23.29 15 2 C 0.30 13.68 14.30 88.33 1.26 14.94 15 3 C -0.14 -6.10 5.92 -19.71 -0.12 -6.22 15 4 C 0.03 1.06 9.75 22.74 0.22 1.28 15 5 C -0.26 -9.46 6.46 23.18 0.15 -9.31 15 6 S 0.07 1.97 23.23 -56.49 -1.31 0.66 15 7 C -0.15 -4.19 10.26 67.06 0.69 -3.50 15 8 C -0.13 -4.27 5.97 -18.74 -0.11 -4.38 15 9 C 0.14 3.59 7.24 71.23 0.52 4.11 15 10 O -0.58 -12.04 12.47 -148.98 -1.86 -13.89 15 11 C 0.01 0.21 5.99 -20.30 -0.12 0.09 15 12 C -0.23 -9.85 6.96 23.22 0.16 -9.69 15 13 C 0.12 5.52 5.33 -20.04 -0.11 5.41 15 14 C -0.45 -22.92 9.07 23.34 0.21 -22.71 15 15 H 0.06 3.42 7.56 -2.91 -0.02 3.40 15 16 C 0.05 2.49 5.41 85.31 0.46 2.96 15 17 N -0.81 -40.13 13.92 21.86 0.30 -39.82 15 18 Si 0.96 36.86 24.46 68.60 1.68 38.54 15 19 H -0.24 -7.89 6.67 99.48 0.66 -7.23 15 20 H -0.25 -9.86 6.82 99.48 0.68 -9.18 15 21 H -0.28 -10.03 7.11 99.48 0.71 -9.32 15 22 H 0.14 4.35 8.06 -2.91 -0.02 4.33 15 23 H 0.19 4.47 7.40 -2.91 -0.02 4.45 15 24 H 0.06 1.54 8.14 -2.39 -0.02 1.52 15 25 H 0.07 1.64 8.14 -2.39 -0.02 1.62 15 26 H 0.40 4.18 9.12 -74.05 -0.68 3.51 15 27 H 0.12 4.66 4.23 -2.91 -0.01 4.65 15 28 H 0.30 13.22 8.29 -92.71 -0.77 12.45 15 Total: -1.00 -57.50 266.85 2.87 -54.64 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: 0.49 Total: 10.19 kcal Atomic # 6 Polarization: -30.24 SS G_CDS: 3.22 Total: -27.02 kcal Atomic # 7 Polarization: -63.77 SS G_CDS: 0.66 Total: -63.11 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: -1.86 Total: -13.89 kcal Atomic # 14 Polarization: 36.86 SS G_CDS: 1.68 Total: 38.54 kcal Atomic # 16 Polarization: 1.97 SS G_CDS: -1.31 Total: 0.66 kcal Total: -57.50 2.87 -54.64 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396218677.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.657 kcal (2) G-P(sol) polarization free energy of solvation -57.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds