Wall clock time and date at job start Mon Mar 30 2020 06:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.38507 * 119.92135 * 294.83128 * 3 2 1 5 5 C 1.41545 * 120.23097 * 180.02562 * 4 3 2 6 6 C 1.39918 * 128.37438 * 180.02562 * 5 4 3 7 7 C 1.36875 * 115.02881 * 179.97438 * 6 5 4 8 8 C 1.39918 * 124.80411 * 180.02562 * 7 6 5 9 9 H 1.08003 * 119.99885 * 359.97438 * 8 7 6 10 10 C 1.40183 * 120.00154 * 179.97438 * 8 7 6 11 11 N 1.30752 * 120.00422 * 0.02562 * 10 8 7 12 12 Si 1.86808 * 119.99755 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47017 * 60.00318 * 12 10 8 14 14 H 1.48502 * 109.47031 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47205 * 299.99859 * 12 10 8 16 16 S 1.75439 * 110.40054 * 359.97438 * 7 6 5 17 17 C 1.40529 * 118.77505 * 359.97438 * 5 4 3 18 18 C 1.39861 * 120.06864 * 0.02562 * 17 5 4 19 19 C 1.50699 * 119.66944 * 179.97438 * 18 17 5 20 20 O 1.42902 * 109.46897 * 180.02562 * 19 18 17 21 21 C 1.37233 * 120.66417 * 359.97438 * 18 17 5 22 22 H 1.08002 * 119.88384 * 0.02562 * 4 3 2 23 23 H 1.08002 * 122.48646 * 0.02562 * 6 5 4 24 24 H 0.96994 * 120.00218 * 179.97438 * 11 10 8 25 25 H 1.09003 * 109.46744 * 299.99539 * 19 18 17 26 26 H 1.08997 * 109.47300 * 59.99896 * 19 18 17 27 27 H 0.96699 * 113.99796 * 180.02562 * 20 19 18 28 28 H 1.07993 * 119.94582 * 180.02562 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2591 -0.5032 1.0895 5 6 4.6745 -0.5053 1.0966 6 6 5.5374 -0.9679 2.0962 7 6 6.8708 -0.8374 1.8161 8 6 7.9082 -1.2321 2.6681 9 1 7.6808 -1.6760 3.6260 10 6 9.2425 -1.0514 2.2782 11 7 9.5178 -0.5136 1.1187 12 14 10.6274 -1.5778 3.4161 13 1 10.5248 -3.0357 3.6792 14 1 11.9340 -1.2806 2.7759 15 1 10.5244 -0.8349 4.6978 16 16 7.0954 -0.1067 0.2370 17 6 5.3574 0.0108 -0.0179 18 6 4.6401 0.5147 -1.1077 19 6 5.3815 1.0664 -2.2980 20 8 4.4429 1.5191 -3.2759 21 6 3.2677 0.5118 -1.1039 22 1 2.7161 -0.8958 1.9365 23 1 5.1780 -1.3968 3.0200 24 1 10.4411 -0.3883 0.8491 25 1 6.0068 1.9013 -1.9814 26 1 6.0083 0.2860 -2.7293 27 1 4.8507 1.8874 -4.0715 28 1 2.7255 0.9034 -1.9518 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396218733.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:56 Heat of formation + Delta-G solvation = -10.531829 kcal Electronic energy + Delta-G solvation = -15664.868873 eV Core-core repulsion = 12963.874190 eV Total energy + Delta-G solvation = -2700.994683 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.79136 -36.58930 -36.09213 -34.94596 -33.20731 -31.10585 -29.30111 -25.85980 -25.30798 -23.44435 -21.30481 -19.47106 -18.07362 -17.53897 -16.68829 -16.15564 -15.26887 -14.64948 -14.52081 -14.10311 -13.74048 -13.37177 -13.13571 -12.88786 -12.29858 -12.23200 -12.16405 -11.70892 -11.64211 -11.47687 -11.26742 -10.70173 -10.48857 -10.35984 -10.18511 -10.00335 -9.44954 -9.26507 -8.45024 -7.60454 -7.33903 -6.59496 -4.84613 1.56636 1.87488 2.71450 2.76653 2.80819 3.03909 3.16188 3.25351 3.45216 3.65018 3.70408 4.49409 4.50906 4.53494 4.88954 5.41333 5.70230 5.82834 5.86485 6.05205 6.39059 6.45106 6.52945 6.80488 7.01599 7.09137 7.16948 7.30321 7.51993 7.69464 7.81789 7.86297 7.99825 8.11475 8.25425 9.50278 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.028949 B = 0.005981 C = 0.004970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.973141 B = 4680.240835 C = 5632.069638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C 0.278 3.722 3 C -0.034 4.034 4 C -0.092 4.092 5 C 0.016 3.984 6 C -0.360 4.360 7 C 0.054 3.946 8 C -0.381 4.381 9 H 0.101 0.899 10 C 0.054 3.946 11 N -0.777 5.777 12 Si 0.940 3.060 13 H -0.258 1.258 14 H -0.272 1.272 15 H -0.258 1.258 16 S 0.153 5.847 17 C -0.241 4.241 18 C -0.031 4.031 19 C 0.119 3.881 20 O -0.569 6.569 21 C -0.126 4.126 22 H 0.114 0.886 23 H 0.111 0.889 24 H 0.304 0.696 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.375 0.625 28 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.413 1.495 -3.236 4.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.137 5.137 2 C -0.036 4.036 3 C -0.040 4.040 4 C -0.115 4.115 5 C 0.008 3.992 6 C -0.384 4.384 7 C -0.065 4.065 8 C -0.414 4.414 9 H 0.119 0.881 10 C -0.168 4.168 11 N -0.403 5.403 12 Si 0.762 3.238 13 H -0.182 1.182 14 H -0.196 1.196 15 H -0.182 1.182 16 S 0.415 5.585 17 C -0.357 4.357 18 C -0.036 4.036 19 C 0.041 3.959 20 O -0.374 6.374 21 C -0.149 4.149 22 H 0.132 0.868 23 H 0.129 0.871 24 H 0.117 0.883 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.222 0.778 28 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.709 1.727 -3.736 4.927 hybrid contribution 0.224 -0.439 0.949 1.069 sum 2.933 1.287 -2.787 4.246 Atomic orbital electron populations 1.81120 1.12399 1.10848 1.09334 1.26036 0.92935 0.92282 0.92303 1.15609 0.83149 1.07513 0.97735 1.20836 0.92828 1.01172 0.96621 1.17774 0.91967 0.96313 0.93186 1.19578 0.90884 1.25088 1.02880 1.21409 0.95389 0.94642 0.95110 1.19340 0.89047 1.30226 1.02820 0.88128 1.26333 1.01511 0.92992 0.95949 1.68541 1.23708 1.29509 1.18537 0.85776 0.77568 0.80461 0.79957 1.18238 1.19649 1.18244 1.84842 0.93659 1.64297 1.15732 1.23673 1.03154 1.10465 0.98393 1.18559 0.92721 0.99389 0.92938 1.20895 0.90024 0.97506 0.87433 1.86466 1.36340 1.83527 1.31101 1.20179 0.92985 1.04358 0.97358 0.86839 0.87094 0.88286 0.92376 0.92369 0.77832 0.85742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -9.02 18.54 41.84 0.78 -8.25 15 2 C 0.28 5.23 15.31 -22.47 -0.34 4.89 15 3 C -0.03 -0.65 5.72 -107.08 -0.61 -1.26 15 4 C -0.09 -1.83 9.77 -38.22 -0.37 -2.20 15 5 C 0.02 0.35 5.85 -107.14 -0.63 -0.28 15 6 C -0.36 -8.35 10.14 -39.45 -0.40 -8.75 15 7 C 0.05 1.28 6.11 -39.45 -0.24 1.04 15 8 C -0.38 -8.67 9.26 -38.22 -0.35 -9.03 15 9 H 0.10 2.16 7.85 -52.48 -0.41 1.74 15 10 C 0.05 1.13 5.50 -17.28 -0.10 1.03 15 11 N -0.78 -16.61 10.58 55.56 0.59 -16.02 15 12 Si 0.94 15.67 29.56 -169.99 -5.03 10.64 15 13 H -0.26 -4.29 7.11 56.52 0.40 -3.89 15 14 H -0.27 -4.40 7.11 56.52 0.40 -4.00 15 15 H -0.26 -4.30 7.11 56.52 0.40 -3.89 15 16 S 0.15 3.38 19.78 -107.50 -2.13 1.25 15 17 C -0.24 -5.21 6.32 -38.11 -0.24 -5.45 15 18 C -0.03 -0.61 5.90 -104.38 -0.62 -1.22 15 19 C 0.12 1.88 7.08 36.00 0.25 2.13 15 20 O -0.57 -8.04 12.09 -35.23 -0.43 -8.46 15 21 C -0.13 -2.40 9.06 -39.16 -0.35 -2.76 15 22 H 0.11 2.05 8.06 -52.49 -0.42 1.63 15 23 H 0.11 2.45 8.06 -52.49 -0.42 2.03 15 24 H 0.30 5.80 8.29 -40.82 -0.34 5.46 15 25 H 0.06 0.87 8.14 -51.93 -0.42 0.45 15 26 H 0.06 0.87 8.14 -51.93 -0.42 0.45 15 27 H 0.38 3.24 9.12 45.56 0.42 3.65 15 28 H 0.12 2.26 6.95 -52.49 -0.36 1.89 15 LS Contribution 272.49 15.07 4.11 4.11 Total: -1.00 -25.75 272.49 -7.30 -33.04 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -1.19 Total: 5.53 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: -4.00 Total: -21.85 kcal Atomic # 7 Polarization: -25.63 SS G_CDS: 1.36 Total: -24.27 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: -0.43 Total: -8.46 kcal Atomic # 14 Polarization: 15.67 SS G_CDS: -5.03 Total: 10.64 kcal Atomic # 16 Polarization: 3.38 SS G_CDS: -2.13 Total: 1.25 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -25.75 -7.30 -33.04 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396218733.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.512 kcal (2) G-P(sol) polarization free energy of solvation -25.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds