Wall clock time and date at job start Mon Mar 30 2020 06:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.38507 * 119.92135 * 294.83128 * 3 2 1 5 5 C 1.41545 * 120.23097 * 180.02562 * 4 3 2 6 6 C 1.39918 * 128.37438 * 180.02562 * 5 4 3 7 7 C 1.36875 * 115.02881 * 179.97438 * 6 5 4 8 8 C 1.39918 * 124.80411 * 180.02562 * 7 6 5 9 9 H 1.08003 * 119.99885 * 359.97438 * 8 7 6 10 10 C 1.40183 * 120.00154 * 179.97438 * 8 7 6 11 11 N 1.30752 * 120.00422 * 0.02562 * 10 8 7 12 12 Si 1.86808 * 119.99755 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47017 * 60.00318 * 12 10 8 14 14 H 1.48502 * 109.47031 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47205 * 299.99859 * 12 10 8 16 16 S 1.75439 * 110.40054 * 359.97438 * 7 6 5 17 17 C 1.40529 * 118.77505 * 359.97438 * 5 4 3 18 18 C 1.39861 * 120.06864 * 0.02562 * 17 5 4 19 19 C 1.50699 * 119.66944 * 179.97438 * 18 17 5 20 20 O 1.42902 * 109.46897 * 180.02562 * 19 18 17 21 21 C 1.37233 * 120.66417 * 359.97438 * 18 17 5 22 22 H 1.08002 * 119.88384 * 0.02562 * 4 3 2 23 23 H 1.08002 * 122.48646 * 0.02562 * 6 5 4 24 24 H 0.96994 * 120.00218 * 179.97438 * 11 10 8 25 25 H 1.09003 * 109.46744 * 299.99539 * 19 18 17 26 26 H 1.08997 * 109.47300 * 59.99896 * 19 18 17 27 27 H 0.96699 * 113.99796 * 180.02562 * 20 19 18 28 28 H 1.07993 * 119.94582 * 180.02562 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2591 -0.5032 1.0895 5 6 4.6745 -0.5053 1.0966 6 6 5.5374 -0.9679 2.0962 7 6 6.8708 -0.8374 1.8161 8 6 7.9082 -1.2321 2.6681 9 1 7.6808 -1.6760 3.6260 10 6 9.2425 -1.0514 2.2782 11 7 9.5178 -0.5136 1.1187 12 14 10.6274 -1.5778 3.4161 13 1 10.5248 -3.0357 3.6792 14 1 11.9340 -1.2806 2.7759 15 1 10.5244 -0.8349 4.6978 16 16 7.0954 -0.1067 0.2370 17 6 5.3574 0.0108 -0.0179 18 6 4.6401 0.5147 -1.1077 19 6 5.3815 1.0664 -2.2980 20 8 4.4429 1.5191 -3.2759 21 6 3.2677 0.5118 -1.1039 22 1 2.7161 -0.8958 1.9365 23 1 5.1780 -1.3968 3.0200 24 1 10.4411 -0.3883 0.8491 25 1 6.0068 1.9013 -1.9814 26 1 6.0083 0.2860 -2.7293 27 1 4.8507 1.8874 -4.0715 28 1 2.7255 0.9034 -1.9518 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396218733.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:56 Heat of formation + Delta-G solvation = -24.569786 kcal Electronic energy + Delta-G solvation = -15665.477605 eV Core-core repulsion = 12963.874190 eV Total energy + Delta-G solvation = -2701.603415 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.34712 -37.84615 -37.65863 -36.51649 -34.80591 -32.58480 -30.95086 -27.43978 -26.74064 -25.03514 -22.91477 -21.05623 -19.69232 -18.97650 -18.08778 -17.70132 -16.77359 -16.04546 -15.89322 -15.62918 -15.19285 -14.89369 -14.61645 -14.44126 -13.91518 -13.78733 -13.67996 -13.33073 -13.07726 -13.05163 -12.61385 -12.09210 -11.97087 -11.91618 -11.76795 -11.23009 -11.00184 -10.96284 -10.00340 -9.27360 -8.92087 -8.26185 -6.55554 -0.01991 0.26895 1.30476 1.35805 1.40753 1.54393 1.62640 1.74360 1.86221 2.12349 2.15473 2.88297 2.96687 3.23038 3.39561 4.01536 4.32977 4.45039 4.55937 4.61191 4.81928 4.84568 4.93077 5.20158 5.44103 5.46268 5.57343 5.67958 5.86069 6.04221 6.17536 6.41619 6.45954 6.57129 6.99240 7.95229 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.028949 B = 0.005981 C = 0.004970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.973141 B = 4680.240835 C = 5632.069638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C 0.292 3.708 3 C -0.028 4.028 4 C -0.096 4.096 5 C -0.004 4.004 6 C -0.385 4.385 7 C 0.023 3.977 8 C -0.410 4.410 9 H 0.103 0.897 10 C 0.021 3.979 11 N -0.796 5.796 12 Si 1.009 2.991 13 H -0.257 1.257 14 H -0.259 1.259 15 H -0.257 1.257 16 S 0.155 5.845 17 C -0.254 4.254 18 C -0.038 4.038 19 C 0.125 3.875 20 O -0.578 6.578 21 C -0.121 4.121 22 H 0.128 0.872 23 H 0.108 0.892 24 H 0.315 0.685 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.401 0.599 28 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.965 1.824 -3.950 5.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.145 5.145 2 C -0.022 4.022 3 C -0.034 4.034 4 C -0.118 4.118 5 C -0.012 4.012 6 C -0.409 4.409 7 C -0.096 4.096 8 C -0.443 4.443 9 H 0.121 0.879 10 C -0.198 4.198 11 N -0.422 5.422 12 Si 0.827 3.173 13 H -0.181 1.181 14 H -0.183 1.183 15 H -0.181 1.181 16 S 0.416 5.584 17 C -0.370 4.370 18 C -0.043 4.043 19 C 0.047 3.953 20 O -0.387 6.387 21 C -0.144 4.144 22 H 0.145 0.855 23 H 0.126 0.874 24 H 0.128 0.872 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.251 0.749 28 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.245 2.074 -4.487 5.913 hybrid contribution -0.036 -0.498 1.075 1.186 sum 3.209 1.576 -3.411 4.942 Atomic orbital electron populations 1.81142 1.12599 1.11116 1.09677 1.25809 0.92558 0.91924 0.91932 1.15619 0.83262 1.06976 0.97539 1.20953 0.92143 1.01270 0.97483 1.17959 0.92944 0.96945 0.93395 1.19703 0.91290 1.26492 1.03457 1.21768 0.95987 0.95522 0.96316 1.19662 0.90177 1.31273 1.03192 0.87939 1.27185 1.02974 0.92392 0.97266 1.68548 1.24952 1.29201 1.19493 0.84780 0.74760 0.79882 0.77863 1.18078 1.18318 1.18091 1.84552 0.94323 1.64502 1.15031 1.23863 1.03018 1.11044 0.99098 1.18959 0.93086 0.98604 0.93616 1.20762 0.89735 0.98005 0.86761 1.86390 1.36497 1.83725 1.32076 1.20401 0.93002 1.03501 0.97491 0.85456 0.87389 0.87159 0.91479 0.91468 0.74857 0.84349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -17.56 18.54 19.00 0.35 -17.21 15 2 C 0.29 10.47 15.31 88.33 1.35 11.82 15 3 C -0.03 -1.03 5.72 -21.46 -0.12 -1.15 15 4 C -0.10 -3.79 9.77 23.15 0.23 -3.56 15 5 C 0.00 -0.20 5.85 -21.50 -0.13 -0.33 15 6 C -0.38 -18.46 10.14 22.36 0.23 -18.23 15 7 C 0.02 1.14 6.11 22.36 0.14 1.27 15 8 C -0.41 -19.06 9.26 23.15 0.21 -18.85 15 9 H 0.10 4.52 7.85 -2.91 -0.02 4.50 15 10 C 0.02 0.89 5.50 85.33 0.47 1.36 15 11 N -0.80 -33.75 10.58 21.87 0.23 -33.52 15 12 Si 1.01 31.17 29.56 68.60 2.03 33.20 15 13 H -0.26 -7.83 7.11 99.48 0.71 -7.12 15 14 H -0.26 -7.43 7.11 99.48 0.71 -6.72 15 15 H -0.26 -7.83 7.11 99.48 0.71 -7.13 15 16 S 0.16 6.89 19.78 -56.49 -1.12 5.77 15 17 C -0.25 -10.98 6.32 23.22 0.15 -10.83 15 18 C -0.04 -1.42 5.90 -19.71 -0.12 -1.54 15 19 C 0.12 3.69 7.08 71.24 0.50 4.20 15 20 O -0.58 -14.63 12.09 -148.98 -1.80 -16.43 15 21 C -0.12 -4.41 9.06 22.54 0.20 -4.20 15 22 H 0.13 4.57 8.06 -2.91 -0.02 4.54 15 23 H 0.11 5.01 8.06 -2.91 -0.02 4.99 15 24 H 0.31 11.71 8.29 -92.71 -0.77 10.94 15 25 H 0.07 1.88 8.14 -2.39 -0.02 1.86 15 26 H 0.07 1.88 8.14 -2.39 -0.02 1.86 15 27 H 0.40 5.59 9.12 -74.06 -0.68 4.92 15 28 H 0.14 4.66 6.95 -2.91 -0.02 4.64 15 Total: -1.00 -54.31 272.49 3.36 -50.95 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: 0.55 Total: 17.28 kcal Atomic # 6 Polarization: -43.16 SS G_CDS: 3.12 Total: -40.04 kcal Atomic # 7 Polarization: -51.31 SS G_CDS: 0.58 Total: -50.73 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -1.80 Total: -16.43 kcal Atomic # 14 Polarization: 31.17 SS G_CDS: 2.03 Total: 33.20 kcal Atomic # 16 Polarization: 6.89 SS G_CDS: -1.12 Total: 5.77 kcal Total: -54.31 3.36 -50.95 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396218733.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.382 kcal (2) G-P(sol) polarization free energy of solvation -54.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds