Wall clock time and date at job start Mon Mar 30 2020 06:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.35487 * 123.12310 * 73.76534 * 3 2 1 5 5 C 1.50699 * 124.02842 * 359.97343 * 4 3 2 6 6 O 1.42895 * 109.47211 * 90.00125 * 5 4 3 7 7 S 1.70041 * 111.94542 * 179.97438 * 4 3 2 8 8 C 1.75839 * 93.03102 * 359.97438 * 7 4 3 9 9 C 1.39862 * 130.40702 * 179.97438 * 8 7 4 10 10 C 1.38059 * 121.46501 * 180.02562 * 9 8 7 11 11 C 1.37647 * 121.18123 * 359.97438 * 10 9 8 12 12 C 1.40440 * 119.95344 * 0.24322 * 11 10 9 13 13 C 1.40705 * 120.44756 * 179.71795 * 12 11 10 14 14 H 1.08005 * 120.00283 * 151.16250 * 13 12 11 15 15 C 1.39979 * 120.00449 * 331.15179 * 13 12 11 16 16 N 1.30849 * 119.99294 * 345.98516 * 15 13 12 17 17 Si 1.86800 * 120.00398 * 165.98303 * 15 13 12 18 18 H 1.48498 * 109.47042 * 60.00083 * 17 15 13 19 19 H 1.48505 * 109.46839 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46917 * 300.00042 * 17 15 13 21 21 C 1.39322 * 109.87976 * 359.97438 * 8 7 4 22 22 H 1.08998 * 109.46567 * 210.00409 * 5 4 3 23 23 H 1.08994 * 109.46875 * 329.99908 * 5 4 3 24 24 H 0.96701 * 114.00102 * 179.97438 * 6 5 4 25 25 H 1.07998 * 119.26822 * 359.97438 * 9 8 7 26 26 H 1.08000 * 119.40604 * 179.97438 * 10 9 8 27 27 H 1.07997 * 120.01438 * 180.02562 * 11 10 9 28 28 H 0.96997 * 119.99477 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.3085 -0.3163 -1.0895 5 6 2.7236 -0.7053 -2.4227 6 8 2.5376 0.4651 -3.2211 7 16 4.9767 -0.2227 -0.7732 8 6 4.7273 0.2649 0.8978 9 6 5.6529 0.5589 1.9042 10 6 5.2471 0.9280 3.1711 11 6 3.9120 1.0215 3.4928 12 6 2.9357 0.7339 2.5250 13 6 1.5681 0.8204 2.8442 14 1 0.8484 1.0624 2.0761 15 6 1.1400 0.5926 4.1573 16 7 1.9499 0.0378 5.0224 17 14 -0.5873 1.0806 4.6747 18 1 -1.5778 0.3512 3.8428 19 1 -0.7916 0.7361 6.1047 20 1 -0.7653 2.5430 4.4880 21 6 3.3631 0.3439 1.1697 22 1 3.4032 -1.3885 -2.9321 23 1 1.7628 -1.1964 -2.2684 24 1 2.1637 0.2895 -4.0954 25 1 6.7086 0.4950 1.6856 26 1 5.9905 1.1473 3.9232 27 1 3.6156 1.3124 4.4897 28 1 1.6534 -0.1198 5.9324 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396218734.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:06 Heat of formation + Delta-G solvation = 10.100279 kcal Electronic energy + Delta-G solvation = -16112.628614 eV Core-core repulsion = 13412.528606 eV Total energy + Delta-G solvation = -2700.100008 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.39032 -36.88157 -35.77610 -34.43193 -33.47203 -29.95789 -29.46339 -26.37102 -25.08840 -23.08148 -20.81990 -20.53335 -17.94809 -17.33045 -16.63181 -16.22945 -15.37220 -15.04045 -14.29356 -13.70908 -13.59949 -13.41111 -12.96972 -12.83034 -12.34444 -12.11194 -11.95972 -11.70735 -11.34041 -11.28376 -11.19084 -10.74204 -10.65454 -10.08950 -9.92698 -9.79783 -9.67135 -9.48354 -8.30701 -7.54115 -7.12651 -6.89685 -4.61658 1.28902 2.26810 2.55499 2.69615 2.72830 2.92270 2.97947 3.05971 3.45807 3.72925 4.10832 4.32283 4.61210 4.87533 5.21968 5.29870 5.35908 5.60302 6.00847 6.17580 6.26203 6.65140 6.73034 6.76039 6.91956 7.06669 7.39839 7.62586 7.71847 7.74404 7.87159 8.23459 8.27789 8.44804 8.56747 9.79399 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.020501 B = 0.008636 C = 0.006260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.489905 B = 3241.471138 C = 4472.117051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C 0.296 3.704 3 C 0.036 3.964 4 C -0.231 4.231 5 C 0.155 3.845 6 O -0.563 6.563 7 S 0.124 5.876 8 C -0.084 4.084 9 C -0.225 4.225 10 C -0.058 4.058 11 C -0.183 4.183 12 C 0.153 3.847 13 C -0.427 4.427 14 H 0.086 0.914 15 C 0.075 3.925 16 N -0.766 5.766 17 Si 0.911 3.089 18 H -0.259 1.259 19 H -0.272 1.272 20 H -0.258 1.258 21 C -0.163 4.163 22 H 0.057 0.943 23 H 0.055 0.945 24 H 0.375 0.625 25 H 0.096 0.904 26 H 0.099 0.901 27 H 0.124 0.876 28 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.387 -1.314 -6.333 7.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.119 5.119 2 C -0.020 4.020 3 C 0.017 3.983 4 C -0.352 4.352 5 C 0.076 3.924 6 O -0.369 6.369 7 S 0.391 5.609 8 C -0.199 4.199 9 C -0.251 4.251 10 C -0.080 4.080 11 C -0.204 4.204 12 C 0.148 3.852 13 C -0.454 4.454 14 H 0.104 0.896 15 C -0.147 4.147 16 N -0.388 5.388 17 Si 0.734 3.266 18 H -0.183 1.183 19 H -0.197 1.197 20 H -0.182 1.182 21 C -0.169 4.169 22 H 0.075 0.925 23 H 0.073 0.927 24 H 0.222 0.778 25 H 0.114 0.886 26 H 0.117 0.883 27 H 0.142 0.858 28 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.141 -1.415 -6.505 7.361 hybrid contribution -1.803 0.053 0.762 1.958 sum 1.339 -1.362 -5.743 6.052 Atomic orbital electron populations 1.81068 1.12009 1.09325 1.09476 1.25075 0.92118 0.93061 0.91756 1.15911 0.84697 1.03966 0.93705 1.22983 0.99096 1.15651 0.97446 1.20279 0.98348 0.86678 0.87079 1.86639 1.86860 1.32941 1.30441 1.82183 1.00830 1.71494 1.06360 1.22130 0.96459 1.05166 0.96147 1.19526 0.95899 1.16609 0.93088 1.20501 0.95920 0.97140 0.94396 1.21039 0.91123 1.07926 1.00362 1.18307 0.93365 0.86199 0.87357 1.19752 0.93353 1.37639 0.94693 0.89555 1.26027 1.00541 0.92236 0.95909 1.69796 1.37150 1.26402 1.05482 0.86254 0.81202 0.80824 0.78282 1.18314 1.19690 1.18203 1.19629 0.89855 1.12648 0.94753 0.92515 0.92693 0.77848 0.88556 0.88296 0.85846 0.89921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -10.17 18.18 41.84 0.76 -9.41 15 2 C 0.30 6.68 12.15 -22.47 -0.27 6.41 15 3 C 0.04 0.79 5.84 -106.05 -0.62 0.17 15 4 C -0.23 -4.40 5.91 -35.29 -0.21 -4.61 15 5 C 0.16 2.35 7.12 36.01 0.26 2.60 15 6 O -0.56 -8.38 13.64 -35.23 -0.48 -8.86 15 7 S 0.12 2.22 22.91 -107.50 -2.46 -0.24 15 8 C -0.08 -1.83 6.46 -38.57 -0.25 -2.08 15 9 C -0.23 -4.70 10.02 -39.04 -0.39 -5.09 15 10 C -0.06 -1.25 9.95 -39.86 -0.40 -1.64 15 11 C -0.18 -4.38 8.64 -38.97 -0.34 -4.71 15 12 C 0.15 3.88 5.71 -104.42 -0.60 3.29 15 13 C -0.43 -10.91 8.33 -38.00 -0.32 -11.22 15 14 H 0.09 2.24 5.72 -52.48 -0.30 1.94 15 15 C 0.08 1.79 5.19 -17.32 -0.09 1.70 15 16 N -0.77 -18.33 11.03 55.55 0.61 -17.72 15 17 Si 0.91 18.42 29.58 -169.99 -5.03 13.39 15 18 H -0.26 -5.42 7.11 56.52 0.40 -5.02 15 19 H -0.27 -5.19 7.11 56.52 0.40 -4.79 15 20 H -0.26 -5.16 7.11 56.52 0.40 -4.76 15 21 C -0.16 -3.88 6.19 -102.87 -0.64 -4.52 15 22 H 0.06 0.70 8.14 -51.93 -0.42 0.28 15 23 H 0.05 0.81 7.53 -51.93 -0.39 0.42 15 24 H 0.37 3.39 9.12 45.56 0.42 3.81 15 25 H 0.10 1.76 8.06 -52.49 -0.42 1.34 15 26 H 0.10 1.81 8.06 -52.49 -0.42 1.39 15 27 H 0.12 2.99 6.35 -52.49 -0.33 2.66 15 28 H 0.29 6.25 8.30 -40.82 -0.34 5.91 15 LS Contribution 269.45 15.07 4.06 4.06 Total: -1.00 -27.90 269.45 -7.41 -35.31 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -1.01 Total: 3.17 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: -3.86 Total: -19.70 kcal Atomic # 7 Polarization: -28.50 SS G_CDS: 1.37 Total: -27.12 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: -0.48 Total: -8.86 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.03 Total: 13.39 kcal Atomic # 16 Polarization: 2.22 SS G_CDS: -2.46 Total: -0.24 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -27.90 -7.41 -35.31 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396218734.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.408 kcal (2) G-P(sol) polarization free energy of solvation -27.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds