Wall clock time and date at job start Mon Mar 30 2020 06:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.35487 * 123.12310 * 73.76534 * 3 2 1 5 5 C 1.50699 * 124.02842 * 359.97343 * 4 3 2 6 6 O 1.42895 * 109.47211 * 90.00125 * 5 4 3 7 7 S 1.70041 * 111.94542 * 179.97438 * 4 3 2 8 8 C 1.75839 * 93.03102 * 359.97438 * 7 4 3 9 9 C 1.39862 * 130.40702 * 179.97438 * 8 7 4 10 10 C 1.38059 * 121.46501 * 180.02562 * 9 8 7 11 11 C 1.37647 * 121.18123 * 359.97438 * 10 9 8 12 12 C 1.40440 * 119.95344 * 0.24322 * 11 10 9 13 13 C 1.40705 * 120.44756 * 179.71795 * 12 11 10 14 14 H 1.08005 * 120.00283 * 151.16250 * 13 12 11 15 15 C 1.39979 * 120.00449 * 331.15179 * 13 12 11 16 16 N 1.30849 * 119.99294 * 345.98516 * 15 13 12 17 17 Si 1.86800 * 120.00398 * 165.98303 * 15 13 12 18 18 H 1.48498 * 109.47042 * 60.00083 * 17 15 13 19 19 H 1.48505 * 109.46839 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46917 * 300.00042 * 17 15 13 21 21 C 1.39322 * 109.87976 * 359.97438 * 8 7 4 22 22 H 1.08998 * 109.46567 * 210.00409 * 5 4 3 23 23 H 1.08994 * 109.46875 * 329.99908 * 5 4 3 24 24 H 0.96701 * 114.00102 * 179.97438 * 6 5 4 25 25 H 1.07998 * 119.26822 * 359.97438 * 9 8 7 26 26 H 1.08000 * 119.40604 * 179.97438 * 10 9 8 27 27 H 1.07997 * 120.01438 * 180.02562 * 11 10 9 28 28 H 0.96997 * 119.99477 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.3085 -0.3163 -1.0895 5 6 2.7236 -0.7053 -2.4227 6 8 2.5376 0.4651 -3.2211 7 16 4.9767 -0.2227 -0.7732 8 6 4.7273 0.2649 0.8978 9 6 5.6529 0.5589 1.9042 10 6 5.2471 0.9280 3.1711 11 6 3.9120 1.0215 3.4928 12 6 2.9357 0.7339 2.5250 13 6 1.5681 0.8204 2.8442 14 1 0.8484 1.0624 2.0761 15 6 1.1400 0.5926 4.1573 16 7 1.9499 0.0378 5.0224 17 14 -0.5873 1.0806 4.6747 18 1 -1.5778 0.3512 3.8428 19 1 -0.7916 0.7361 6.1047 20 1 -0.7653 2.5430 4.4880 21 6 3.3631 0.3439 1.1697 22 1 3.4032 -1.3885 -2.9321 23 1 1.7628 -1.1964 -2.2684 24 1 2.1637 0.2895 -4.0954 25 1 6.7086 0.4950 1.6856 26 1 5.9905 1.1473 3.9232 27 1 3.6156 1.3124 4.4897 28 1 1.6534 -0.1198 5.9324 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396218734.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:05 Heat of formation + Delta-G solvation = -7.349571 kcal Electronic energy + Delta-G solvation = -16113.385296 eV Core-core repulsion = 13412.528606 eV Total energy + Delta-G solvation = -2700.856690 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.03782 -38.25611 -37.36433 -36.11159 -35.12194 -31.69037 -31.01320 -27.93857 -26.77264 -24.66056 -22.50590 -22.19578 -19.65311 -18.47405 -18.25406 -17.83922 -17.02823 -16.60165 -15.81144 -15.35239 -15.10229 -15.01920 -14.58189 -14.40869 -14.04429 -13.81435 -13.55312 -13.38238 -13.05622 -12.94098 -12.64794 -12.33626 -12.21868 -11.72455 -11.52855 -11.34860 -11.21288 -11.03303 -9.99314 -9.21401 -8.83879 -8.50939 -6.41708 -0.32078 0.71042 0.82717 0.96214 1.09272 1.27067 1.36768 1.41694 1.72286 2.08148 2.41249 2.58309 3.21073 3.41673 3.52379 3.96240 4.14642 4.37167 4.45234 4.59902 4.65272 4.96279 5.04211 5.08878 5.18102 5.37165 5.67791 5.86402 6.03722 6.11635 6.51573 6.51815 6.68382 6.81805 6.88020 8.11176 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.020501 B = 0.008636 C = 0.006260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.489905 B = 3241.471138 C = 4472.117051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C 0.302 3.698 3 C -0.014 4.014 4 C -0.206 4.206 5 C 0.152 3.848 6 O -0.581 6.581 7 S 0.220 5.780 8 C -0.120 4.120 9 C -0.216 4.216 10 C -0.062 4.062 11 C -0.206 4.206 12 C 0.121 3.879 13 C -0.470 4.470 14 H 0.069 0.931 15 C 0.044 3.956 16 N -0.795 5.795 17 Si 0.965 3.035 18 H -0.274 1.274 19 H -0.251 1.251 20 H -0.257 1.257 21 C -0.179 4.179 22 H 0.098 0.902 23 H 0.057 0.943 24 H 0.403 0.597 25 H 0.130 0.870 26 H 0.129 0.871 27 H 0.110 0.890 28 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.226 -1.883 -8.403 10.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.144 5.144 2 C -0.012 4.012 3 C -0.033 4.033 4 C -0.327 4.327 5 C 0.073 3.927 6 O -0.391 6.391 7 S 0.488 5.512 8 C -0.235 4.235 9 C -0.241 4.241 10 C -0.083 4.083 11 C -0.228 4.228 12 C 0.116 3.884 13 C -0.498 4.498 14 H 0.087 0.913 15 C -0.174 4.174 16 N -0.419 5.419 17 Si 0.786 3.214 18 H -0.199 1.199 19 H -0.174 1.174 20 H -0.182 1.182 21 C -0.185 4.185 22 H 0.116 0.884 23 H 0.075 0.925 24 H 0.254 0.746 25 H 0.148 0.852 26 H 0.147 0.853 27 H 0.128 0.872 28 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.002 -1.982 -8.586 10.133 hybrid contribution -2.129 0.169 1.066 2.387 sum 2.874 -1.813 -7.520 8.252 Atomic orbital electron populations 1.81033 1.12542 1.10626 1.10183 1.25281 0.92406 0.92378 0.91183 1.16030 0.84545 1.08091 0.94621 1.23840 1.00354 1.10167 0.98375 1.20442 0.99399 0.87284 0.85615 1.86545 1.87336 1.32877 1.32346 1.81833 0.98464 1.68776 1.02090 1.22600 0.95904 1.05834 0.99172 1.19960 0.97431 1.14250 0.92464 1.20835 0.95447 0.96310 0.95673 1.21024 0.92332 1.09536 0.99874 1.18634 0.93779 0.87166 0.88792 1.19745 0.93548 1.41111 0.95382 0.91254 1.26580 1.03396 0.91928 0.95546 1.69806 1.38519 1.27602 1.05955 0.85494 0.77102 0.80144 0.78698 1.19861 1.17387 1.18162 1.19950 0.91448 1.12307 0.94825 0.88435 0.92471 0.74635 0.85203 0.85338 0.87249 0.89239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -22.05 18.18 19.00 0.35 -21.70 15 2 C 0.30 13.95 12.15 88.33 1.07 15.02 15 3 C -0.01 -0.60 5.84 -20.79 -0.12 -0.72 15 4 C -0.21 -7.25 5.91 25.05 0.15 -7.10 15 5 C 0.15 4.00 7.12 71.24 0.51 4.51 15 6 O -0.58 -15.10 13.64 -148.98 -2.03 -17.13 15 7 S 0.22 6.98 22.91 -56.49 -1.29 5.69 15 8 C -0.12 -4.99 6.46 22.92 0.15 -4.84 15 9 C -0.22 -8.51 10.02 22.62 0.23 -8.28 15 10 C -0.06 -2.59 9.95 22.09 0.22 -2.37 15 11 C -0.21 -10.17 8.64 22.67 0.20 -9.98 15 12 C 0.12 6.40 5.71 -19.73 -0.11 6.28 15 13 C -0.47 -25.40 8.33 23.30 0.19 -25.20 15 14 H 0.07 3.84 5.72 -2.91 -0.02 3.82 15 15 C 0.04 2.22 5.19 85.26 0.44 2.66 15 16 N -0.80 -39.74 11.03 21.84 0.24 -39.50 15 17 Si 0.96 39.38 29.58 68.60 2.03 41.41 15 18 H -0.27 -11.66 7.11 99.48 0.71 -10.95 15 19 H -0.25 -9.19 7.11 99.48 0.71 -8.49 15 20 H -0.26 -10.32 7.11 99.48 0.71 -9.62 15 21 C -0.18 -8.61 6.19 -18.73 -0.12 -8.72 15 22 H 0.10 1.83 8.14 -2.39 -0.02 1.82 15 23 H 0.06 1.52 7.53 -2.39 -0.02 1.51 15 24 H 0.40 5.63 9.12 -74.06 -0.68 4.96 15 25 H 0.13 4.18 8.06 -2.91 -0.02 4.16 15 26 H 0.13 4.48 8.06 -2.91 -0.02 4.46 15 27 H 0.11 5.58 6.35 -2.91 -0.02 5.56 15 28 H 0.30 13.27 8.30 -92.71 -0.77 12.50 15 Total: -1.00 -62.89 269.45 2.65 -60.24 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: 0.56 Total: 9.73 kcal Atomic # 6 Polarization: -41.54 SS G_CDS: 2.81 Total: -38.73 kcal Atomic # 7 Polarization: -61.79 SS G_CDS: 0.59 Total: -61.20 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: -2.03 Total: -17.13 kcal Atomic # 14 Polarization: 39.38 SS G_CDS: 2.03 Total: 41.41 kcal Atomic # 16 Polarization: 6.98 SS G_CDS: -1.29 Total: 5.69 kcal Total: -62.89 2.65 -60.24 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396218734.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.891 kcal (2) G-P(sol) polarization free energy of solvation -62.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds