Wall clock time and date at job start Mon Mar 30 2020 06:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35789 * 116.99630 * 2 1 4 4 C 1.37995 * 119.83533 * 0.02562 * 3 2 1 5 5 C 1.38488 * 120.18841 * 179.97438 * 4 3 2 6 6 C 1.37631 * 120.19238 * 0.04702 * 5 4 3 7 7 C 1.40026 * 120.62248 * 359.95853 * 6 5 4 8 8 S 1.75876 * 129.57721 * 180.02562 * 7 6 5 9 9 C 1.75173 * 92.82637 * 179.97438 * 8 7 6 10 10 C 1.43203 * 124.64411 * 179.97438 * 9 8 7 11 11 N 6.42861 * 171.59625 * 179.97438 * 2 1 3 12 12 C 1.38708 * 110.70961 * 359.76033 * 9 8 7 13 13 C 1.39697 * 123.34648 * 180.28099 * 12 9 8 14 14 H 1.08004 * 120.00089 * 137.29543 * 13 12 9 15 15 C 1.40374 * 119.99959 * 317.30127 * 13 12 9 16 16 N 1.30638 * 120.00099 * 153.98148 * 15 13 12 17 17 Si 1.86794 * 120.00062 * 333.98205 * 15 13 12 18 18 H 1.48507 * 109.47269 * 94.72966 * 17 15 13 19 19 H 1.48499 * 109.47345 * 214.72886 * 17 15 13 20 20 H 1.48499 * 109.47155 * 334.72872 * 17 15 13 21 21 C 1.39286 * 119.62544 * 0.02562 * 7 6 5 22 22 H 1.08999 * 109.47611 * 300.00156 * 1 2 3 23 23 H 1.09002 * 109.46790 * 60.00898 * 1 2 3 24 24 H 1.09004 * 109.46509 * 180.02562 * 1 2 3 25 25 H 1.08003 * 119.91055 * 359.97438 * 4 3 2 26 26 H 1.07995 * 119.90458 * 180.02562 * 5 4 3 27 27 H 1.08002 * 119.68967 * 179.97438 * 6 5 4 28 28 H 0.96996 * 120.00587 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0455 1.2099 0.0000 4 6 1.2905 2.3650 0.0005 5 6 1.9115 3.6029 0.0011 6 6 3.2852 3.6881 0.0001 7 6 4.0717 2.5295 -0.0006 8 16 5.8226 2.3639 -0.0012 9 6 5.7438 0.6139 -0.0010 10 6 6.8841 -0.2524 -0.0019 11 7 7.7887 -0.9395 0.0004 12 6 4.4256 0.1823 0.0050 13 6 4.0590 -1.1657 0.0122 14 1 3.2559 -1.5035 0.6506 15 6 4.7344 -2.0812 -0.8100 16 7 4.7840 -3.3439 -0.4786 17 14 5.5622 -1.4941 -2.3782 18 1 6.9951 -1.2138 -2.1066 19 1 5.4526 -2.5467 -3.4199 20 1 4.8972 -0.2549 -2.8549 21 6 3.4566 1.2798 -0.0008 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3632 -1.0277 0.0005 25 1 0.2122 2.3037 0.0005 26 1 1.3162 4.5039 0.0019 27 1 3.7610 4.6576 0.0001 28 1 5.2504 -3.9766 -1.0469 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396219117.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:21 Heat of formation + Delta-G solvation = 30.846035 kcal Electronic energy + Delta-G solvation = -16481.516291 eV Core-core repulsion = 13782.315886 eV Total energy + Delta-G solvation = -2699.200405 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.68934 -37.19355 -35.88633 -34.34709 -32.95953 -29.67485 -29.14991 -27.12051 -26.25745 -23.03124 -21.93183 -20.25577 -18.43972 -17.43645 -16.49766 -15.53685 -15.33293 -15.30816 -15.13326 -14.37724 -13.70893 -13.27402 -13.14221 -13.09359 -12.48361 -12.14239 -12.10394 -11.59150 -11.41395 -11.34693 -11.06746 -10.89362 -10.57306 -10.43943 -10.20589 -9.88172 -9.59733 -9.19700 -8.28220 -7.66064 -7.25929 -6.83539 -4.74468 1.37202 1.78598 2.40448 2.76232 3.03978 3.08985 3.17010 3.30776 3.78608 3.92030 4.15530 4.32984 4.46437 4.95148 5.13649 5.25304 5.36667 5.40554 5.57456 5.69342 5.75269 5.83566 6.00191 6.39938 6.53019 6.67190 6.81393 7.00316 7.11290 7.34070 7.88665 8.04223 8.16394 8.42755 8.99922 9.71081 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.019460 B = 0.011014 C = 0.007794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.498355 B = 2541.649173 C = 3591.544826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.288 6.288 3 C 0.180 3.820 4 C -0.241 4.241 5 C -0.068 4.068 6 C -0.143 4.143 7 C -0.074 4.074 8 S 0.060 5.940 9 C -0.351 4.351 10 C 0.319 3.681 11 N -0.502 5.502 12 C 0.133 3.867 13 C -0.376 4.376 14 H 0.113 0.887 15 C 0.094 3.906 16 N -0.759 5.759 17 Si 0.879 3.121 18 H -0.237 1.237 19 H -0.280 1.280 20 H -0.244 1.244 21 C -0.094 4.094 22 H 0.051 0.949 23 H 0.051 0.949 24 H 0.096 0.904 25 H 0.125 0.875 26 H 0.122 0.878 27 H 0.119 0.881 28 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.427 9.175 -1.152 13.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.200 6.200 3 C 0.132 3.868 4 C -0.264 4.264 5 C -0.089 4.089 6 C -0.167 4.167 7 C -0.190 4.190 8 S 0.321 5.679 9 C -0.471 4.471 10 C 0.011 3.989 11 N -0.185 5.185 12 C 0.122 3.878 13 C -0.405 4.405 14 H 0.131 0.869 15 C -0.133 4.133 16 N -0.380 5.380 17 Si 0.701 3.299 18 H -0.160 1.160 19 H -0.206 1.206 20 H -0.167 1.167 21 C -0.104 4.104 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.114 0.886 25 H 0.143 0.857 26 H 0.140 0.860 27 H 0.137 0.863 28 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.608 8.551 -1.148 10.868 hybrid contribution -1.517 -0.564 -0.689 1.758 sum -8.125 7.988 -1.836 11.540 Atomic orbital electron populations 1.23040 0.79834 1.03551 1.00682 1.86337 1.19890 1.26412 1.87353 1.18914 0.90234 0.84233 0.93440 1.20828 0.99359 0.92193 1.14012 1.20555 0.93713 0.96598 0.98050 1.20299 0.93030 0.95930 1.07480 1.22423 0.98043 0.95595 1.02966 1.82950 0.98649 1.02585 1.83728 1.18540 0.90626 0.91818 1.46110 1.24051 0.91448 0.92155 0.91290 1.81053 1.11351 1.08783 1.17320 1.17267 0.87367 0.92414 0.90770 1.19185 1.14247 0.89188 1.17917 0.86904 1.26299 0.92404 0.94267 1.00285 1.69619 1.28727 1.04266 1.35376 0.86823 0.82925 0.80316 0.79828 1.16048 1.20636 1.16714 1.18784 0.90459 0.93062 1.08079 0.93083 0.93090 0.88594 0.85741 0.86011 0.86278 0.89572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.80 101.05 0.99 1.30 15 2 O -0.29 -5.37 8.70 -19.08 -0.17 -5.53 15 3 C 0.18 3.41 6.75 -38.51 -0.26 3.15 15 4 C -0.24 -3.67 9.01 -39.58 -0.36 -4.03 15 5 C -0.07 -0.97 10.02 -39.71 -0.40 -1.36 15 6 C -0.14 -2.28 10.06 -39.13 -0.39 -2.67 15 7 C -0.07 -1.45 6.41 -38.52 -0.25 -1.70 15 8 S 0.06 1.23 23.12 -107.50 -2.49 -1.26 15 9 C -0.35 -8.57 5.25 -37.48 -0.20 -8.76 15 10 C 0.32 8.29 11.18 -22.47 -0.25 8.04 15 11 N -0.50 -13.49 17.35 41.84 0.73 -12.76 15 12 C 0.13 3.27 4.73 -105.89 -0.50 2.77 15 13 C -0.38 -9.71 8.40 -38.23 -0.32 -10.03 15 14 H 0.11 2.99 7.36 -52.48 -0.39 2.61 15 15 C 0.09 2.44 4.72 -17.26 -0.08 2.35 15 16 N -0.76 -19.83 13.92 55.57 0.77 -19.05 15 17 Si 0.88 21.07 24.94 -169.99 -4.24 16.83 15 18 H -0.24 -5.96 5.21 56.52 0.29 -5.67 15 19 H -0.28 -6.37 7.11 56.52 0.40 -5.96 15 20 H -0.24 -5.83 7.11 56.52 0.40 -5.43 15 21 C -0.09 -2.05 6.01 -105.06 -0.63 -2.68 15 22 H 0.05 0.55 7.64 -51.93 -0.40 0.15 15 23 H 0.05 0.55 7.65 -51.93 -0.40 0.16 15 24 H 0.10 1.05 8.14 -51.93 -0.42 0.63 15 25 H 0.12 1.50 6.23 -52.48 -0.33 1.17 15 26 H 0.12 1.28 8.06 -52.49 -0.42 0.85 15 27 H 0.12 1.59 8.06 -52.49 -0.42 1.16 15 28 H 0.29 7.07 8.29 -40.82 -0.34 6.73 15 LS Contribution 261.21 15.07 3.94 3.94 Total: -1.00 -28.94 261.21 -6.12 -35.06 By element: Atomic # 1 Polarization: -1.59 SS G_CDS: -2.02 Total: -3.60 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: -2.65 Total: -13.62 kcal Atomic # 7 Polarization: -33.32 SS G_CDS: 1.50 Total: -31.82 kcal Atomic # 8 Polarization: -5.37 SS G_CDS: -0.17 Total: -5.53 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.24 Total: 16.83 kcal Atomic # 16 Polarization: 1.23 SS G_CDS: -2.49 Total: -1.26 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -28.94 -6.12 -35.06 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396219117.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.903 kcal (2) G-P(sol) polarization free energy of solvation -28.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds