Wall clock time and date at job start Mon Mar 30 2020 06:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35789 * 116.99630 * 2 1 4 4 C 1.37995 * 119.83533 * 0.02562 * 3 2 1 5 5 C 1.38488 * 120.18841 * 179.97438 * 4 3 2 6 6 C 1.37631 * 120.19238 * 0.04702 * 5 4 3 7 7 C 1.40026 * 120.62248 * 359.95853 * 6 5 4 8 8 S 1.75876 * 129.57721 * 180.02562 * 7 6 5 9 9 C 1.75173 * 92.82637 * 179.97438 * 8 7 6 10 10 C 1.43203 * 124.64411 * 179.97438 * 9 8 7 11 11 N 6.42861 * 171.59625 * 179.97438 * 2 1 3 12 12 C 1.38708 * 110.70961 * 359.76033 * 9 8 7 13 13 C 1.39697 * 123.34648 * 180.28099 * 12 9 8 14 14 H 1.08004 * 120.00089 * 137.29543 * 13 12 9 15 15 C 1.40374 * 119.99959 * 317.30127 * 13 12 9 16 16 N 1.30638 * 120.00099 * 153.98148 * 15 13 12 17 17 Si 1.86794 * 120.00062 * 333.98205 * 15 13 12 18 18 H 1.48507 * 109.47269 * 94.72966 * 17 15 13 19 19 H 1.48499 * 109.47345 * 214.72886 * 17 15 13 20 20 H 1.48499 * 109.47155 * 334.72872 * 17 15 13 21 21 C 1.39286 * 119.62544 * 0.02562 * 7 6 5 22 22 H 1.08999 * 109.47611 * 300.00156 * 1 2 3 23 23 H 1.09002 * 109.46790 * 60.00898 * 1 2 3 24 24 H 1.09004 * 109.46509 * 180.02562 * 1 2 3 25 25 H 1.08003 * 119.91055 * 359.97438 * 4 3 2 26 26 H 1.07995 * 119.90458 * 180.02562 * 5 4 3 27 27 H 1.08002 * 119.68967 * 179.97438 * 6 5 4 28 28 H 0.96996 * 120.00587 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0455 1.2099 0.0000 4 6 1.2905 2.3650 0.0005 5 6 1.9115 3.6029 0.0011 6 6 3.2852 3.6881 0.0001 7 6 4.0717 2.5295 -0.0006 8 16 5.8226 2.3639 -0.0012 9 6 5.7438 0.6139 -0.0010 10 6 6.8841 -0.2524 -0.0019 11 7 7.7887 -0.9395 0.0004 12 6 4.4256 0.1823 0.0050 13 6 4.0590 -1.1657 0.0122 14 1 3.2559 -1.5035 0.6506 15 6 4.7344 -2.0812 -0.8100 16 7 4.7840 -3.3439 -0.4786 17 14 5.5622 -1.4941 -2.3782 18 1 6.9951 -1.2138 -2.1066 19 1 5.4526 -2.5467 -3.4199 20 1 4.8972 -0.2549 -2.8549 21 6 3.4566 1.2798 -0.0008 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3632 -1.0277 0.0005 25 1 0.2122 2.3037 0.0005 26 1 1.3162 4.5039 0.0019 27 1 3.7610 4.6576 0.0001 28 1 5.2504 -3.9766 -1.0469 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396219117.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:21 Heat of formation + Delta-G solvation = 12.960294 kcal Electronic energy + Delta-G solvation = -16482.291875 eV Core-core repulsion = 13782.315886 eV Total energy + Delta-G solvation = -2699.975989 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.02360 -38.64211 -37.66596 -36.23594 -34.73313 -31.06261 -30.56131 -28.58512 -27.77343 -24.59371 -23.29018 -21.86205 -20.06761 -19.04904 -18.13945 -17.14402 -16.77571 -16.61300 -16.49189 -15.95130 -15.24881 -15.14738 -14.83564 -14.59017 -14.07766 -13.75530 -13.67275 -13.30800 -13.24044 -12.76893 -12.71989 -12.23935 -12.12470 -12.05323 -11.75817 -11.45049 -11.26467 -11.13461 -9.78143 -9.24044 -9.19237 -8.36675 -6.65795 -0.17470 0.46788 0.82376 0.99476 1.19877 1.22160 1.32204 1.42644 1.97937 2.28952 2.42643 2.62402 2.74393 3.10690 3.62263 4.08893 4.19081 4.31455 4.39315 4.52244 4.60877 4.63135 4.82066 4.89019 5.02887 5.31083 5.45694 5.50945 5.58332 5.87777 6.09623 6.27664 6.48876 6.68683 6.97166 7.81826 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.019460 B = 0.011014 C = 0.007794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.498355 B = 2541.649173 C = 3591.544826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.325 6.325 3 C 0.166 3.834 4 C -0.228 4.228 5 C -0.044 4.044 6 C -0.144 4.144 7 C -0.083 4.083 8 S 0.083 5.917 9 C -0.373 4.373 10 C 0.318 3.682 11 N -0.529 5.529 12 C 0.137 3.863 13 C -0.405 4.405 14 H 0.093 0.907 15 C 0.074 3.926 16 N -0.793 5.793 17 Si 0.910 3.090 18 H -0.256 1.256 19 H -0.262 1.262 20 H -0.245 1.245 21 C -0.145 4.145 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.104 0.896 25 H 0.163 0.837 26 H 0.175 0.825 27 H 0.151 0.849 28 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.931 12.522 -1.536 17.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.238 6.238 3 C 0.118 3.882 4 C -0.250 4.250 5 C -0.064 4.064 6 C -0.168 4.168 7 C -0.199 4.199 8 S 0.342 5.658 9 C -0.493 4.493 10 C 0.011 3.989 11 N -0.212 5.212 12 C 0.125 3.875 13 C -0.436 4.436 14 H 0.111 0.889 15 C -0.149 4.149 16 N -0.416 5.416 17 Si 0.731 3.269 18 H -0.181 1.181 19 H -0.186 1.186 20 H -0.168 1.168 21 C -0.154 4.154 22 H 0.091 0.909 23 H 0.090 0.910 24 H 0.122 0.878 25 H 0.181 0.819 26 H 0.192 0.808 27 H 0.169 0.831 28 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.137 11.890 -1.539 15.074 hybrid contribution -0.946 -1.385 -0.495 1.748 sum -10.083 10.505 -2.033 14.702 Atomic orbital electron populations 1.23378 0.76937 1.05005 1.02662 1.86290 1.23030 1.27088 1.87353 1.19172 0.89642 0.85682 0.93728 1.21334 1.01144 0.91160 1.11336 1.21209 0.93232 0.98023 0.93972 1.20777 0.93853 0.95810 1.06394 1.22680 0.97304 0.96379 1.03511 1.82655 1.00229 0.98585 1.84304 1.19030 0.90204 0.94500 1.45523 1.24493 0.91552 0.91927 0.90878 1.81012 1.12423 1.09460 1.18344 1.17583 0.88289 0.92932 0.88707 1.19093 1.14678 0.90278 1.19534 0.88905 1.26668 0.92524 0.94332 1.01408 1.69636 1.30646 1.04895 1.36378 0.86362 0.81037 0.80518 0.78977 1.18109 1.18640 1.16791 1.18868 0.91877 0.92712 1.11922 0.90914 0.90967 0.87764 0.81912 0.80757 0.83121 0.89066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.33 9.80 113.37 1.11 1.44 15 2 O -0.33 -11.86 8.70 -91.18 -0.79 -12.65 15 3 C 0.17 5.97 6.75 22.96 0.15 6.12 15 4 C -0.23 -5.77 9.01 22.27 0.20 -5.57 15 5 C -0.04 -0.96 10.02 22.19 0.22 -0.73 15 6 C -0.14 -3.89 10.06 22.56 0.23 -3.66 15 7 C -0.08 -3.07 6.41 22.96 0.15 -2.92 15 8 S 0.08 3.30 23.12 -56.49 -1.31 1.99 15 9 C -0.37 -18.52 5.25 23.63 0.12 -18.40 15 10 C 0.32 17.06 11.18 88.33 0.99 18.04 15 11 N -0.53 -29.28 17.35 19.00 0.33 -28.95 15 12 C 0.14 6.87 4.73 -20.69 -0.10 6.78 15 13 C -0.41 -21.88 8.40 23.14 0.19 -21.69 15 14 H 0.09 5.25 7.36 -2.91 -0.02 5.22 15 15 C 0.07 3.98 4.72 85.39 0.40 4.38 15 16 N -0.79 -43.18 13.92 21.90 0.30 -42.88 15 17 Si 0.91 44.25 24.94 68.60 1.71 45.96 15 18 H -0.26 -13.24 5.21 99.48 0.52 -12.72 15 19 H -0.26 -11.71 7.11 99.48 0.71 -11.01 15 20 H -0.25 -11.76 7.11 99.48 0.71 -11.05 15 21 C -0.15 -6.21 6.01 -20.15 -0.12 -6.33 15 22 H 0.07 1.30 7.64 -2.39 -0.02 1.28 15 23 H 0.07 1.30 7.65 -2.39 -0.02 1.28 15 24 H 0.10 2.12 8.14 -2.39 -0.02 2.10 15 25 H 0.16 2.85 6.23 -2.91 -0.02 2.83 15 26 H 0.18 2.10 8.06 -2.91 -0.02 2.08 15 27 H 0.15 3.12 8.06 -2.91 -0.02 3.10 15 28 H 0.30 14.96 8.29 -92.71 -0.77 14.19 15 Total: -1.00 -66.58 261.21 4.82 -61.76 By element: Atomic # 1 Polarization: -3.72 SS G_CDS: 1.02 Total: -2.70 kcal Atomic # 6 Polarization: -26.09 SS G_CDS: 3.55 Total: -22.54 kcal Atomic # 7 Polarization: -72.46 SS G_CDS: 0.63 Total: -71.83 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: -0.79 Total: -12.65 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.71 Total: 45.96 kcal Atomic # 16 Polarization: 3.30 SS G_CDS: -1.31 Total: 1.99 kcal Total: -66.58 4.82 -61.76 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396219117.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.722 kcal (2) G-P(sol) polarization free energy of solvation -66.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds