Wall clock time and date at job start Mon Mar 30 2020 06:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.33810 * 122.87314 * 314.66136 * 3 2 1 5 5 S 1.75195 * 111.35612 * 180.02562 * 4 3 2 6 6 C 1.75975 * 92.53358 * 0.02562 * 5 4 3 7 7 C 1.39871 * 109.96589 * 0.02562 * 6 5 4 8 8 C 1.40179 * 119.15992 * 179.97438 * 7 6 5 9 9 C 1.40031 * 120.04537 * 359.97438 * 8 7 6 10 10 C 1.41246 * 120.10445 * 179.97438 * 9 8 7 11 11 H 1.08002 * 119.99935 * 24.57300 * 10 9 8 12 12 C 1.39884 * 120.00105 * 204.57029 * 10 9 8 13 13 N 1.30885 * 119.99578 * 17.86465 * 12 10 9 14 14 Si 1.86797 * 120.00156 * 197.86215 * 12 10 9 15 15 H 1.48506 * 109.46726 * 60.00054 * 14 12 10 16 16 H 1.48495 * 109.47144 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47387 * 300.00462 * 14 12 10 18 18 C 1.41075 * 119.78771 * 359.80598 * 9 8 7 19 19 C 1.35721 * 120.04057 * 0.43094 * 18 9 8 20 20 C 1.50704 * 119.56377 * 179.80511 * 19 18 9 21 21 O 1.42901 * 109.47017 * 359.72877 * 20 19 18 22 22 H 1.08009 * 124.32127 * 0.02562 * 4 3 2 23 23 H 1.08008 * 119.97474 * 180.02562 * 8 7 6 24 24 H 0.96997 * 119.99479 * 179.97438 * 13 12 10 25 25 H 1.08001 * 119.98140 * 180.23465 * 18 9 8 26 26 H 1.08994 * 109.46771 * 239.72940 * 20 19 18 27 27 H 1.09002 * 109.47204 * 119.72524 * 20 19 18 28 28 H 0.96696 * 114.00563 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2946 -0.7890 0.7994 5 16 5.0112 -0.5418 0.5511 6 6 4.7358 0.6806 -0.6845 7 6 3.3627 0.8676 -0.8737 8 6 2.9250 1.8045 -1.8200 9 6 3.8576 2.5401 -2.5617 10 6 3.4179 3.4842 -3.5159 11 1 2.4410 3.9346 -3.4194 12 6 4.2477 3.8357 -4.5858 13 7 5.2560 3.0675 -4.9116 14 14 3.9166 5.4014 -5.5493 15 1 3.9937 6.5701 -4.6363 16 1 4.9307 5.5447 -6.6245 17 1 2.5616 5.3338 -6.1533 18 6 5.2376 2.3378 -2.3502 19 6 5.6586 1.4265 -1.4368 20 6 7.1354 1.2159 -1.2227 21 8 7.8706 2.0781 -2.0935 22 1 2.8763 -1.4893 1.5073 23 1 1.8676 1.9598 -1.9766 24 1 5.8312 3.3111 -5.6537 25 1 5.9596 2.9061 -2.9178 26 1 7.3895 0.1783 -1.4392 27 1 7.3886 1.4436 -0.1873 28 1 8.8305 1.9963 -2.0095 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396219269.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:42 Heat of formation + Delta-G solvation = 9.616806 kcal Electronic energy + Delta-G solvation = -15964.603136 eV Core-core repulsion = 13264.482163 eV Total energy + Delta-G solvation = -2700.120973 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.64008 -36.81562 -35.91028 -34.69290 -33.08432 -30.71454 -28.60535 -25.79364 -25.38468 -23.53873 -20.95568 -20.45954 -17.67484 -16.87888 -16.56465 -16.23414 -15.35862 -14.49738 -14.47491 -14.10536 -13.59101 -13.54243 -13.17432 -12.71222 -12.68391 -12.12552 -11.89932 -11.64052 -11.42717 -11.28672 -11.07808 -10.78775 -10.41481 -10.25276 -10.06140 -9.75525 -9.55679 -9.19056 -8.45722 -7.51910 -7.07863 -6.83344 -4.52301 1.22555 2.11368 2.41713 2.63900 2.80588 3.00042 3.01171 3.05955 3.13237 3.81765 3.90239 4.37908 4.56314 4.78862 5.16174 5.37627 5.63492 5.81124 5.96507 6.02875 6.21616 6.50680 6.75426 6.88099 7.02016 7.27848 7.36756 7.63682 7.72168 7.91260 8.05179 8.10789 8.37089 8.67814 8.68987 9.98980 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.019024 B = 0.007796 C = 0.005627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.465503 B = 3590.793014 C = 4974.562445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C 0.287 3.713 3 C -0.034 4.034 4 C -0.152 4.152 5 S 0.070 5.930 6 C -0.232 4.232 7 C -0.012 4.012 8 C -0.219 4.219 9 C 0.115 3.885 10 C -0.449 4.449 11 H 0.083 0.917 12 C 0.075 3.925 13 N -0.774 5.774 14 Si 0.913 3.087 15 H -0.261 1.261 16 H -0.276 1.276 17 H -0.264 1.264 18 C -0.089 4.089 19 C -0.060 4.060 20 C 0.124 3.876 21 O -0.556 6.556 22 H 0.163 0.837 23 H 0.097 0.903 24 H 0.287 0.713 25 H 0.146 0.854 26 H 0.046 0.954 27 H 0.045 0.955 28 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.850 -3.192 5.466 8.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.119 5.119 2 C -0.029 4.029 3 C -0.053 4.053 4 C -0.291 4.291 5 S 0.333 5.667 6 C -0.346 4.346 7 C -0.018 4.018 8 C -0.242 4.242 9 C 0.112 3.888 10 C -0.477 4.477 11 H 0.101 0.899 12 C -0.146 4.146 13 N -0.398 5.398 14 Si 0.737 3.263 15 H -0.186 1.186 16 H -0.201 1.201 17 H -0.188 1.188 18 C -0.110 4.110 19 C -0.064 4.064 20 C 0.046 3.954 21 O -0.359 6.359 22 H 0.180 0.820 23 H 0.115 0.885 24 H 0.098 0.902 25 H 0.163 0.837 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 4.993 -3.704 5.759 8.474 hybrid contribution -0.418 0.946 -0.918 1.383 sum 4.575 -2.758 4.841 7.209 Atomic orbital electron populations 1.81143 1.11979 1.09398 1.09371 1.25260 0.92096 0.92784 0.92770 1.15958 0.84705 1.02530 1.02135 1.25140 0.97758 1.03121 1.03059 1.83313 1.02274 1.41051 1.40032 1.21337 0.95536 1.09034 1.08719 1.18294 0.89851 0.97024 0.96667 1.20634 0.98049 1.01806 1.03696 1.17495 0.91140 0.89771 0.90424 1.19600 1.02407 1.19673 1.06015 0.89856 1.25999 0.93820 0.97493 0.97300 1.69812 1.12838 1.33754 1.23377 0.86274 0.79307 0.81694 0.79048 1.18559 1.20102 1.18834 1.21113 0.96491 0.97548 0.95828 1.18369 0.91109 0.98647 0.98315 1.20783 0.90279 0.92375 0.91925 1.86645 1.21052 1.64392 1.63824 0.81964 0.88457 0.90212 0.83707 0.93557 0.93682 0.78611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -8.77 18.54 41.84 0.78 -7.99 15 2 C 0.29 5.44 15.35 -22.47 -0.34 5.10 15 3 C -0.03 -0.63 5.82 -106.19 -0.62 -1.25 15 4 C -0.15 -2.33 10.83 29.18 0.32 -2.02 15 5 S 0.07 1.10 22.86 -107.50 -2.46 -1.36 15 6 C -0.23 -4.78 6.32 -38.12 -0.24 -5.03 15 7 C -0.01 -0.27 6.00 -105.23 -0.63 -0.90 15 8 C -0.22 -5.28 9.57 -38.18 -0.37 -5.64 15 9 C 0.12 2.94 5.56 -107.01 -0.59 2.35 15 10 C -0.45 -11.35 9.03 -37.82 -0.34 -11.69 15 11 H 0.08 2.03 7.91 -52.49 -0.41 1.62 15 12 C 0.07 1.77 5.13 -17.34 -0.09 1.68 15 13 N -0.77 -18.98 10.96 55.54 0.61 -18.37 15 14 Si 0.91 17.83 29.60 -169.99 -5.03 12.80 15 15 H -0.26 -5.07 7.11 56.52 0.40 -4.67 15 16 H -0.28 -5.24 7.11 56.52 0.40 -4.83 15 17 H -0.26 -5.13 7.11 56.52 0.40 -4.73 15 18 C -0.09 -2.19 7.94 -39.41 -0.31 -2.50 15 19 C -0.06 -1.30 5.87 -104.67 -0.61 -1.92 15 20 C 0.12 2.16 7.08 36.01 0.25 2.42 15 21 O -0.56 -9.65 12.06 -35.23 -0.42 -10.07 15 22 H 0.16 1.90 8.06 -52.48 -0.42 1.48 15 23 H 0.10 2.32 8.03 -52.48 -0.42 1.90 15 24 H 0.29 6.40 8.30 -40.82 -0.34 6.07 15 25 H 0.15 3.71 5.01 -52.49 -0.26 3.45 15 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 15 27 H 0.05 0.70 8.14 -51.93 -0.42 0.27 15 28 H 0.37 4.14 9.12 45.56 0.42 4.55 15 LS Contribution 272.53 15.07 4.11 4.11 Total: -1.00 -27.77 272.53 -7.09 -34.86 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -1.09 Total: 5.42 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: -3.58 Total: -19.40 kcal Atomic # 7 Polarization: -27.74 SS G_CDS: 1.38 Total: -26.36 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: -0.42 Total: -10.07 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.03 Total: 12.80 kcal Atomic # 16 Polarization: 1.10 SS G_CDS: -2.46 Total: -1.36 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -27.77 -7.09 -34.86 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396219269.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.481 kcal (2) G-P(sol) polarization free energy of solvation -27.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds