Wall clock time and date at job start Mon Mar 30 2020 06:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.33810 * 122.87314 * 314.66136 * 3 2 1 5 5 S 1.75195 * 111.35612 * 180.02562 * 4 3 2 6 6 C 1.75975 * 92.53358 * 0.02562 * 5 4 3 7 7 C 1.39871 * 109.96589 * 0.02562 * 6 5 4 8 8 C 1.40179 * 119.15992 * 179.97438 * 7 6 5 9 9 C 1.40031 * 120.04537 * 359.97438 * 8 7 6 10 10 C 1.41246 * 120.10445 * 179.97438 * 9 8 7 11 11 H 1.08002 * 119.99935 * 24.57300 * 10 9 8 12 12 C 1.39884 * 120.00105 * 204.57029 * 10 9 8 13 13 N 1.30885 * 119.99578 * 17.86465 * 12 10 9 14 14 Si 1.86797 * 120.00156 * 197.86215 * 12 10 9 15 15 H 1.48506 * 109.46726 * 60.00054 * 14 12 10 16 16 H 1.48495 * 109.47144 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47387 * 300.00462 * 14 12 10 18 18 C 1.41075 * 119.78771 * 359.80598 * 9 8 7 19 19 C 1.35721 * 120.04057 * 0.43094 * 18 9 8 20 20 C 1.50704 * 119.56377 * 179.80511 * 19 18 9 21 21 O 1.42901 * 109.47017 * 359.72877 * 20 19 18 22 22 H 1.08009 * 124.32127 * 0.02562 * 4 3 2 23 23 H 1.08008 * 119.97474 * 180.02562 * 8 7 6 24 24 H 0.96997 * 119.99479 * 179.97438 * 13 12 10 25 25 H 1.08001 * 119.98140 * 180.23465 * 18 9 8 26 26 H 1.08994 * 109.46771 * 239.72940 * 20 19 18 27 27 H 1.09002 * 109.47204 * 119.72524 * 20 19 18 28 28 H 0.96696 * 114.00563 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2946 -0.7890 0.7994 5 16 5.0112 -0.5418 0.5511 6 6 4.7358 0.6806 -0.6845 7 6 3.3627 0.8676 -0.8737 8 6 2.9250 1.8045 -1.8200 9 6 3.8576 2.5401 -2.5617 10 6 3.4179 3.4842 -3.5159 11 1 2.4410 3.9346 -3.4194 12 6 4.2477 3.8357 -4.5858 13 7 5.2560 3.0675 -4.9116 14 14 3.9166 5.4014 -5.5493 15 1 3.9937 6.5701 -4.6363 16 1 4.9307 5.5447 -6.6245 17 1 2.5616 5.3338 -6.1533 18 6 5.2376 2.3378 -2.3502 19 6 5.6586 1.4265 -1.4368 20 6 7.1354 1.2159 -1.2227 21 8 7.8706 2.0781 -2.0935 22 1 2.8763 -1.4893 1.5073 23 1 1.8676 1.9598 -1.9766 24 1 5.8312 3.3111 -5.6537 25 1 5.9596 2.9061 -2.9178 26 1 7.3895 0.1783 -1.4392 27 1 7.3886 1.4436 -0.1873 28 1 8.8305 1.9963 -2.0095 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396219269.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:42 Heat of formation + Delta-G solvation = -7.749395 kcal Electronic energy + Delta-G solvation = -15965.356191 eV Core-core repulsion = 13264.482163 eV Total energy + Delta-G solvation = -2700.874028 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.25753 -38.26628 -37.36891 -36.33356 -34.70731 -32.40873 -30.22751 -27.55475 -26.88456 -25.03240 -22.60139 -22.10943 -19.36602 -18.33657 -17.99816 -17.74615 -17.05014 -16.12921 -15.83289 -15.64970 -15.14148 -15.07322 -14.71507 -14.26577 -14.22412 -13.72774 -13.48528 -13.15662 -12.97549 -12.94578 -12.63191 -12.32972 -11.95998 -11.87143 -11.67885 -11.22624 -11.19569 -10.83405 -9.99098 -9.19606 -8.77485 -8.41626 -6.37958 -0.19615 0.70950 0.75065 1.10437 1.11183 1.37713 1.46109 1.50546 1.63661 2.18618 2.35515 2.66038 3.15490 3.53994 3.57456 3.86377 4.17389 4.43049 4.62767 4.65336 4.72692 4.83480 5.00011 5.15424 5.28959 5.55409 5.62330 5.87741 5.97991 6.25892 6.44460 6.51585 6.84767 6.87046 7.11017 8.25392 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.019024 B = 0.007796 C = 0.005627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.465503 B = 3590.793014 C = 4974.562445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C 0.300 3.700 3 C -0.072 4.072 4 C -0.113 4.113 5 S 0.166 5.834 6 C -0.255 4.255 7 C -0.020 4.020 8 C -0.250 4.250 9 C 0.089 3.911 10 C -0.493 4.493 11 H 0.073 0.927 12 C 0.039 3.961 13 N -0.805 5.805 14 Si 0.981 3.019 15 H -0.260 1.260 16 H -0.262 1.262 17 H -0.263 1.263 18 C -0.122 4.122 19 C -0.063 4.063 20 C 0.127 3.873 21 O -0.581 6.581 22 H 0.212 0.788 23 H 0.080 0.920 24 H 0.293 0.707 25 H 0.128 0.872 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.452 -4.898 7.431 11.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.146 5.146 2 C -0.016 4.016 3 C -0.091 4.091 4 C -0.252 4.252 5 S 0.430 5.570 6 C -0.369 4.369 7 C -0.026 4.026 8 C -0.273 4.273 9 C 0.086 3.914 10 C -0.521 4.521 11 H 0.092 0.908 12 C -0.178 4.178 13 N -0.429 5.429 14 Si 0.802 3.198 15 H -0.184 1.184 16 H -0.186 1.186 17 H -0.187 1.187 18 C -0.143 4.143 19 C -0.067 4.067 20 C 0.049 3.951 21 O -0.388 6.388 22 H 0.229 0.771 23 H 0.099 0.901 24 H 0.104 0.896 25 H 0.146 0.854 26 H 0.086 0.914 27 H 0.091 0.909 28 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 6.626 -5.423 7.734 11.538 hybrid contribution -0.814 1.263 -1.307 1.991 sum 5.811 -4.161 6.427 9.612 Atomic orbital electron populations 1.81146 1.12620 1.10426 1.10392 1.25314 0.92140 0.92061 0.92050 1.15787 0.84448 1.04641 1.04209 1.25837 0.97863 1.00737 1.00752 1.83033 1.01145 1.36958 1.35876 1.21809 0.94964 1.10229 1.09908 1.18587 0.91397 0.96467 0.96193 1.20628 0.97102 1.03766 1.05778 1.17825 0.92268 0.90322 0.90975 1.19790 1.02941 1.21611 1.07775 0.90841 1.26744 0.93304 1.00152 0.97622 1.69861 1.13741 1.35192 1.24133 0.85259 0.79312 0.77493 0.77755 1.18404 1.18613 1.18707 1.20990 0.95598 0.99729 0.97943 1.18898 0.94100 0.96989 0.96678 1.20829 0.87498 0.93443 0.93311 1.86601 1.23438 1.64651 1.64159 0.77104 0.90146 0.89628 0.85444 0.91424 0.90894 0.75601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -18.50 18.54 19.00 0.35 -18.14 15 2 C 0.30 11.14 15.35 88.33 1.36 12.50 15 3 C -0.07 -2.53 5.82 -20.88 -0.12 -2.65 15 4 C -0.11 -2.90 10.83 66.81 0.72 -2.18 15 5 S 0.17 4.39 22.86 -56.49 -1.29 3.09 15 6 C -0.25 -10.08 6.32 23.22 0.15 -9.93 15 7 C -0.02 -0.86 6.00 -20.26 -0.12 -0.98 15 8 C -0.25 -12.79 9.57 23.18 0.22 -12.57 15 9 C 0.09 4.87 5.56 -21.41 -0.12 4.75 15 10 C -0.49 -26.80 9.03 23.41 0.21 -26.59 15 11 H 0.07 3.92 7.91 -2.91 -0.02 3.90 15 12 C 0.04 1.96 5.13 85.23 0.44 2.40 15 13 N -0.81 -41.26 10.96 21.82 0.24 -41.02 15 14 Si 0.98 37.95 29.60 68.60 2.03 39.98 15 15 H -0.26 -9.87 7.11 99.48 0.71 -9.16 15 16 H -0.26 -9.42 7.11 99.48 0.71 -8.71 15 17 H -0.26 -9.99 7.11 99.48 0.71 -9.28 15 18 C -0.12 -6.24 7.94 22.38 0.18 -6.06 15 19 C -0.06 -2.69 5.87 -19.90 -0.12 -2.81 15 20 C 0.13 4.10 7.08 71.24 0.50 4.60 15 21 O -0.58 -19.48 12.06 -148.98 -1.80 -21.28 15 22 H 0.21 3.44 8.06 -2.91 -0.02 3.42 15 23 H 0.08 4.19 8.03 -2.91 -0.02 4.16 15 24 H 0.29 13.54 8.30 -92.71 -0.77 12.77 15 25 H 0.13 6.87 5.01 -2.91 -0.01 6.85 15 26 H 0.07 1.91 8.14 -2.39 -0.02 1.89 15 27 H 0.07 1.96 8.14 -2.39 -0.02 1.94 15 28 H 0.39 8.04 9.12 -74.06 -0.68 7.36 15 Total: -1.00 -65.13 272.53 3.39 -61.74 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 0.55 Total: 15.15 kcal Atomic # 6 Polarization: -42.82 SS G_CDS: 3.30 Total: -39.52 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: 0.59 Total: -59.16 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -1.80 Total: -21.28 kcal Atomic # 14 Polarization: 37.95 SS G_CDS: 2.03 Total: 39.98 kcal Atomic # 16 Polarization: 4.39 SS G_CDS: -1.29 Total: 3.09 kcal Total: -65.13 3.39 -61.74 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396219269.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.991 kcal (2) G-P(sol) polarization free energy of solvation -65.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds