Wall clock time and date at job start Mon Mar 30 2020 06:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13610 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.40679 * 120.47301 * 300.62987 * 3 2 1 5 5 S 1.76030 * 130.38444 * 359.97438 * 4 3 2 6 6 C 1.75478 * 91.51930 * 180.02562 * 5 4 3 7 7 C 1.32465 * 110.78765 * 0.02562 * 6 5 4 8 8 C 1.50693 * 122.03335 * 180.02562 * 7 6 5 9 9 O 1.42896 * 109.47579 * 359.97325 * 8 7 6 10 10 C 1.40061 * 120.11494 * 180.02562 * 4 3 2 11 11 C 1.42032 * 119.51204 * 359.94628 * 10 4 3 12 12 C 1.35008 * 121.97897 * 359.83986 * 11 10 4 13 13 C 1.41281 * 120.57347 * 0.42492 * 12 11 10 14 14 C 1.40326 * 120.61719 * 179.81214 * 13 12 11 15 15 H 1.08010 * 119.99786 * 205.17771 * 14 13 12 16 16 C 1.40255 * 120.00488 * 25.17412 * 14 13 12 17 17 N 1.30673 * 119.99343 * 17.04374 * 16 14 13 18 18 Si 1.86796 * 120.00258 * 197.04565 * 16 14 13 19 19 H 1.48493 * 109.47222 * 265.17992 * 18 16 14 20 20 H 1.48503 * 109.47137 * 25.17880 * 18 16 14 21 21 H 1.48508 * 109.46970 * 145.17888 * 18 16 14 22 22 H 1.07998 * 124.60356 * 179.97438 * 6 5 4 23 23 H 1.09006 * 109.47224 * 119.97444 * 8 7 6 24 24 H 1.08999 * 109.46954 * 239.96810 * 8 7 6 25 25 H 0.96701 * 114.00588 * 180.02562 * 9 8 7 26 26 H 1.08002 * 119.01112 * 180.02562 * 11 10 4 27 27 H 1.07999 * 119.71532 * 180.23560 * 12 11 10 28 28 H 0.97005 * 119.99380 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2818 -0.6168 1.0433 5 16 2.7049 -1.4638 2.4745 6 6 4.3470 -1.7783 3.0075 7 6 5.2236 -1.2718 2.1532 8 6 6.7103 -1.3970 2.3652 9 8 6.9602 -2.1137 3.5760 10 6 4.6824 -0.6112 1.0360 11 6 5.3740 0.0205 -0.0316 12 6 4.7219 0.6189 -1.0511 13 6 3.3098 0.6440 -1.0849 14 6 2.6311 1.2691 -2.1421 15 1 1.6302 1.6468 -1.9930 16 6 3.2524 1.4035 -3.3924 17 7 4.2983 0.6764 -3.6836 18 14 2.5847 2.6218 -4.6410 19 1 1.6588 1.9231 -5.5681 20 1 1.8540 3.7045 -3.9344 21 1 3.7105 3.2065 -5.4131 22 1 4.6074 -2.3115 3.9098 23 1 7.1529 -1.9348 1.5267 24 1 7.1525 -0.4031 2.4334 25 1 7.8988 -2.2318 3.7766 26 1 6.4540 0.0196 -0.0293 27 1 5.2847 1.0851 -1.8463 28 1 4.7282 0.7696 -4.5482 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396219315.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:40 Heat of formation + Delta-G solvation = 3.056310 kcal Electronic energy + Delta-G solvation = -15875.451430 eV Core-core repulsion = 13175.045972 eV Total energy + Delta-G solvation = -2700.405458 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.68229 -36.91511 -35.36277 -34.93735 -33.06075 -30.19697 -29.31127 -26.52867 -25.68779 -22.23263 -21.88485 -19.24281 -18.44332 -17.48094 -16.55212 -15.80016 -15.56411 -14.74079 -14.72500 -13.89115 -13.65988 -13.49453 -13.00637 -12.57740 -12.09905 -11.87959 -11.82983 -11.74544 -11.69758 -11.26974 -11.17331 -10.91538 -10.47532 -10.25062 -10.16614 -9.94292 -9.73568 -9.47340 -8.46931 -7.63259 -7.45601 -6.86420 -4.91257 1.73664 2.13262 2.45509 2.68082 2.79316 2.85618 2.88259 3.16562 3.52482 3.90326 4.08879 4.32366 4.42642 5.20613 5.33361 5.50986 5.73095 5.74000 5.85671 6.02614 6.35398 6.46268 6.55252 6.74578 6.80452 6.99194 7.34714 7.40218 7.51918 7.59781 7.77046 7.95904 8.15466 8.31216 8.80844 9.46106 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.025378 B = 0.006719 C = 0.005396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.040789 B = 4166.211041 C = 5187.748274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C 0.297 3.703 3 C -0.183 4.183 4 C -0.013 4.013 5 S 0.020 5.980 6 C -0.237 4.237 7 C -0.055 4.055 8 C 0.137 3.863 9 O -0.571 6.571 10 C -0.197 4.197 11 C -0.050 4.050 12 C -0.140 4.140 13 C 0.166 3.834 14 C -0.400 4.400 15 H 0.093 0.907 16 C 0.072 3.928 17 N -0.747 5.747 18 Si 0.921 3.079 19 H -0.262 1.262 20 H -0.252 1.252 21 H -0.267 1.267 22 H 0.155 0.845 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.376 0.624 26 H 0.099 0.901 27 H 0.132 0.868 28 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.202 -0.093 2.767 8.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.184 5.184 2 C -0.012 4.012 3 C -0.196 4.196 4 C -0.130 4.130 5 S 0.283 5.717 6 C -0.370 4.370 7 C -0.067 4.067 8 C 0.057 3.943 9 O -0.376 6.376 10 C -0.204 4.204 11 C -0.071 4.071 12 C -0.159 4.159 13 C 0.158 3.842 14 C -0.427 4.427 15 H 0.111 0.889 16 C -0.153 4.153 17 N -0.368 5.368 18 Si 0.743 3.257 19 H -0.187 1.187 20 H -0.176 1.176 21 H -0.191 1.191 22 H 0.173 0.827 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.222 0.778 26 H 0.117 0.883 27 H 0.149 0.851 28 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.578 -0.569 3.252 5.644 hybrid contribution 2.246 0.697 -1.185 2.634 sum 6.824 0.129 2.067 7.131 Atomic orbital electron populations 1.81017 1.12438 1.13787 1.11117 1.25568 0.92488 0.91565 0.91571 1.15926 0.83064 1.18048 1.02612 1.22083 0.95606 0.99476 0.95885 1.83940 1.08582 1.59518 1.19628 1.24343 0.93919 1.12817 1.05893 1.18323 0.94083 0.99548 0.94715 1.20619 0.92772 0.94974 0.85922 1.86469 1.29747 1.78559 1.42850 1.17284 0.91111 1.12685 0.99275 1.20283 0.97651 0.96508 0.92703 1.20849 0.93898 1.02942 0.98258 1.18343 0.91441 0.85727 0.88701 1.19909 1.01917 1.27090 0.93765 0.88856 1.26265 0.93872 0.95117 1.00068 1.69714 1.15225 1.28810 1.23018 0.86031 0.79918 0.80467 0.79276 1.18668 1.17557 1.19128 0.82720 0.92529 0.92570 0.77822 0.88279 0.85061 0.89219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -12.57 18.54 41.84 0.78 -11.79 15 2 C 0.30 7.30 14.04 -22.47 -0.32 6.98 15 3 C -0.18 -4.38 5.97 -103.80 -0.62 -5.00 15 4 C -0.01 -0.28 6.34 -37.98 -0.24 -0.52 15 5 S 0.02 0.41 23.00 -107.50 -2.47 -2.06 15 6 C -0.24 -4.48 10.32 28.81 0.30 -4.18 15 7 C -0.05 -1.03 5.82 -105.64 -0.61 -1.65 15 8 C 0.14 1.98 7.00 36.00 0.25 2.24 15 9 O -0.57 -7.57 12.45 -35.23 -0.44 -8.01 15 10 C -0.20 -4.13 5.86 -106.86 -0.63 -4.76 15 11 C -0.05 -1.01 9.61 -39.28 -0.38 -1.38 15 12 C -0.14 -3.04 8.58 -39.57 -0.34 -3.38 15 13 C 0.17 3.93 5.72 -104.71 -0.60 3.33 15 14 C -0.40 -9.30 8.55 -38.04 -0.33 -9.63 15 15 H 0.09 2.20 7.38 -52.48 -0.39 1.81 15 16 C 0.07 1.52 5.16 -17.29 -0.09 1.43 15 17 N -0.75 -15.79 10.96 55.56 0.61 -15.18 15 18 Si 0.92 15.92 29.59 -169.99 -5.03 10.89 15 19 H -0.26 -4.58 7.11 56.52 0.40 -4.18 15 20 H -0.25 -4.44 7.11 56.52 0.40 -4.04 15 21 H -0.27 -4.38 7.11 56.52 0.40 -3.98 15 22 H 0.16 2.71 7.40 -52.49 -0.39 2.32 15 23 H 0.06 0.75 8.14 -51.93 -0.42 0.33 15 24 H 0.06 0.73 8.14 -51.93 -0.42 0.31 15 25 H 0.38 2.87 9.12 45.56 0.42 3.28 15 26 H 0.10 1.66 7.84 -52.49 -0.41 1.24 15 27 H 0.13 2.78 6.18 -52.49 -0.32 2.46 15 28 H 0.30 5.51 8.29 -40.82 -0.34 5.17 15 LS Contribution 271.32 15.07 4.09 4.09 Total: -1.00 -26.71 271.32 -7.14 -33.85 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -1.08 Total: 4.74 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: -3.60 Total: -16.53 kcal Atomic # 7 Polarization: -28.35 SS G_CDS: 1.38 Total: -26.97 kcal Atomic # 8 Polarization: -7.57 SS G_CDS: -0.44 Total: -8.01 kcal Atomic # 14 Polarization: 15.92 SS G_CDS: -5.03 Total: 10.89 kcal Atomic # 16 Polarization: 0.41 SS G_CDS: -2.47 Total: -2.06 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -26.71 -7.14 -33.85 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396219315.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.911 kcal (2) G-P(sol) polarization free energy of solvation -26.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds