Wall clock time and date at job start Mon Mar 30 2020 06:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13610 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.40679 * 120.47301 * 300.62987 * 3 2 1 5 5 S 1.76030 * 130.38444 * 359.97438 * 4 3 2 6 6 C 1.75478 * 91.51930 * 180.02562 * 5 4 3 7 7 C 1.32465 * 110.78765 * 0.02562 * 6 5 4 8 8 C 1.50693 * 122.03335 * 180.02562 * 7 6 5 9 9 O 1.42896 * 109.47579 * 359.97325 * 8 7 6 10 10 C 1.40061 * 120.11494 * 180.02562 * 4 3 2 11 11 C 1.42032 * 119.51204 * 359.94628 * 10 4 3 12 12 C 1.35008 * 121.97897 * 359.83986 * 11 10 4 13 13 C 1.41281 * 120.57347 * 0.42492 * 12 11 10 14 14 C 1.40326 * 120.61719 * 179.81214 * 13 12 11 15 15 H 1.08010 * 119.99786 * 205.17771 * 14 13 12 16 16 C 1.40255 * 120.00488 * 25.17412 * 14 13 12 17 17 N 1.30673 * 119.99343 * 17.04374 * 16 14 13 18 18 Si 1.86796 * 120.00258 * 197.04565 * 16 14 13 19 19 H 1.48493 * 109.47222 * 265.17992 * 18 16 14 20 20 H 1.48503 * 109.47137 * 25.17880 * 18 16 14 21 21 H 1.48508 * 109.46970 * 145.17888 * 18 16 14 22 22 H 1.07998 * 124.60356 * 179.97438 * 6 5 4 23 23 H 1.09006 * 109.47224 * 119.97444 * 8 7 6 24 24 H 1.08999 * 109.46954 * 239.96810 * 8 7 6 25 25 H 0.96701 * 114.00588 * 180.02562 * 9 8 7 26 26 H 1.08002 * 119.01112 * 180.02562 * 11 10 4 27 27 H 1.07999 * 119.71532 * 180.23560 * 12 11 10 28 28 H 0.97005 * 119.99380 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2818 -0.6168 1.0433 5 16 2.7049 -1.4638 2.4745 6 6 4.3470 -1.7783 3.0075 7 6 5.2236 -1.2718 2.1532 8 6 6.7103 -1.3970 2.3652 9 8 6.9602 -2.1137 3.5760 10 6 4.6824 -0.6112 1.0360 11 6 5.3740 0.0205 -0.0316 12 6 4.7219 0.6189 -1.0511 13 6 3.3098 0.6440 -1.0849 14 6 2.6311 1.2691 -2.1421 15 1 1.6302 1.6468 -1.9930 16 6 3.2524 1.4035 -3.3924 17 7 4.2983 0.6764 -3.6836 18 14 2.5847 2.6218 -4.6410 19 1 1.6588 1.9231 -5.5681 20 1 1.8540 3.7045 -3.9344 21 1 3.7105 3.2065 -5.4131 22 1 4.6074 -2.3115 3.9098 23 1 7.1529 -1.9348 1.5267 24 1 7.1525 -0.4031 2.4334 25 1 7.8988 -2.2318 3.7766 26 1 6.4540 0.0196 -0.0293 27 1 5.2847 1.0851 -1.8463 28 1 4.7282 0.7696 -4.5482 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396219315.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:39 Heat of formation + Delta-G solvation = -12.581243 kcal Electronic energy + Delta-G solvation = -15876.129525 eV Core-core repulsion = 13175.045972 eV Total energy + Delta-G solvation = -2701.083553 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.24162 -38.24004 -37.03644 -36.52789 -34.61643 -31.87190 -30.92016 -27.80409 -27.33106 -23.89356 -23.47839 -20.79718 -20.06595 -18.83368 -17.91238 -17.38715 -17.12393 -16.24877 -15.83415 -15.41447 -15.27056 -14.95937 -14.74091 -14.11159 -13.76781 -13.59802 -13.55001 -13.34167 -13.15433 -12.77341 -12.70800 -12.40497 -11.97533 -11.74814 -11.69412 -11.34654 -11.15052 -10.99831 -10.06224 -9.29730 -9.05041 -8.47880 -6.64914 0.14675 0.40046 0.83449 1.25407 1.32878 1.37274 1.50731 1.66374 2.00080 2.10542 2.41290 2.54698 3.37723 3.48420 3.65815 4.17556 4.41807 4.49645 4.62840 4.70592 4.76074 4.81858 4.94906 5.10339 5.18410 5.45188 5.71086 5.77681 5.88762 5.95177 6.27047 6.45622 6.62631 6.92357 7.04083 7.90808 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.025378 B = 0.006719 C = 0.005396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.040789 B = 4166.211041 C = 5187.748274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C 0.299 3.701 3 C -0.217 4.217 4 C -0.038 4.038 5 S 0.008 5.992 6 C -0.231 4.231 7 C -0.062 4.062 8 C 0.142 3.858 9 O -0.586 6.586 10 C -0.198 4.198 11 C -0.040 4.040 12 C -0.152 4.152 13 C 0.147 3.853 14 C -0.428 4.428 15 H 0.077 0.923 16 C 0.046 3.954 17 N -0.761 5.761 18 Si 0.984 3.016 19 H -0.264 1.264 20 H -0.262 1.262 21 H -0.244 1.244 22 H 0.173 0.827 23 H 0.074 0.926 24 H 0.077 0.923 25 H 0.402 0.598 26 H 0.139 0.861 27 H 0.135 0.865 28 H 0.310 0.690 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.739 -0.087 2.659 11.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.210 5.210 2 C -0.009 4.009 3 C -0.231 4.231 4 C -0.156 4.156 5 S 0.271 5.729 6 C -0.364 4.364 7 C -0.074 4.074 8 C 0.062 3.938 9 O -0.395 6.395 10 C -0.205 4.205 11 C -0.061 4.061 12 C -0.171 4.171 13 C 0.139 3.861 14 C -0.454 4.454 15 H 0.095 0.905 16 C -0.179 4.179 17 N -0.382 5.382 18 Si 0.802 3.198 19 H -0.189 1.189 20 H -0.185 1.185 21 H -0.168 1.168 22 H 0.190 0.810 23 H 0.092 0.908 24 H 0.094 0.906 25 H 0.252 0.748 26 H 0.157 0.843 27 H 0.153 0.847 28 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.152 -0.582 3.163 7.841 hybrid contribution 1.565 0.609 -1.052 1.981 sum 8.716 0.027 2.111 8.968 Atomic orbital electron populations 1.80970 1.12889 1.15106 1.12041 1.25884 0.92859 0.91075 0.91033 1.16148 0.82730 1.20090 1.04118 1.22366 0.96771 1.00079 0.96378 1.83939 1.10529 1.59303 1.19116 1.24591 0.92605 1.12722 1.06483 1.18716 0.96914 0.98318 0.93425 1.20584 0.89489 0.96578 0.87110 1.86393 1.32499 1.78374 1.42186 1.17687 0.90550 1.12220 1.00084 1.20629 0.99578 0.94561 0.91294 1.20916 0.93051 1.03953 0.99223 1.18654 0.92648 0.85953 0.88817 1.20026 1.01754 1.28383 0.95219 0.90523 1.26882 0.94045 0.96254 1.00676 1.69672 1.15433 1.28907 1.24214 0.85135 0.79740 0.77975 0.76903 1.18863 1.18531 1.16760 0.80987 0.90806 0.90553 0.74791 0.84309 0.84696 0.87734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -27.48 18.54 19.00 0.35 -27.13 15 2 C 0.30 15.33 14.04 88.33 1.24 16.57 15 3 C -0.22 -10.75 5.97 -19.33 -0.12 -10.86 15 4 C -0.04 -1.74 6.34 23.31 0.15 -1.59 15 5 S 0.01 0.33 23.00 -56.49 -1.30 -0.97 15 6 C -0.23 -8.30 10.32 66.69 0.69 -7.61 15 7 C -0.06 -2.18 5.82 -20.41 -0.12 -2.30 15 8 C 0.14 3.52 7.00 71.23 0.50 4.02 15 9 O -0.59 -13.08 12.45 -148.98 -1.85 -14.94 15 10 C -0.20 -8.02 5.86 -21.31 -0.12 -8.15 15 11 C -0.04 -1.52 9.61 22.47 0.22 -1.30 15 12 C -0.15 -6.51 8.58 22.27 0.19 -6.31 15 13 C 0.15 7.12 5.72 -19.92 -0.11 7.00 15 14 C -0.43 -20.43 8.55 23.27 0.20 -20.23 15 15 H 0.08 3.80 7.38 -2.91 -0.02 3.78 15 16 C 0.05 1.91 5.16 85.36 0.44 2.35 15 17 N -0.76 -31.50 10.96 21.88 0.24 -31.26 15 18 Si 0.98 32.04 29.59 68.60 2.03 34.07 15 19 H -0.26 -8.64 7.11 99.48 0.71 -7.93 15 20 H -0.26 -8.83 7.11 99.48 0.71 -8.12 15 21 H -0.24 -7.06 7.11 99.48 0.71 -6.35 15 22 H 0.17 5.56 7.40 -2.91 -0.02 5.53 15 23 H 0.07 1.61 8.14 -2.38 -0.02 1.59 15 24 H 0.08 1.62 8.14 -2.39 -0.02 1.60 15 25 H 0.40 4.35 9.12 -74.06 -0.68 3.67 15 26 H 0.14 4.07 7.84 -2.91 -0.02 4.05 15 27 H 0.14 5.60 6.18 -2.91 -0.02 5.58 15 28 H 0.31 11.04 8.29 -92.70 -0.77 10.27 15 Total: -1.00 -58.14 271.32 3.17 -54.97 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: 0.55 Total: 13.67 kcal Atomic # 6 Polarization: -31.56 SS G_CDS: 3.15 Total: -28.41 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: 0.59 Total: -58.39 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: -1.85 Total: -14.94 kcal Atomic # 14 Polarization: 32.04 SS G_CDS: 2.03 Total: 34.07 kcal Atomic # 16 Polarization: 0.33 SS G_CDS: -1.30 Total: -0.97 kcal Total: -58.14 3.17 -54.97 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396219315.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.387 kcal (2) G-P(sol) polarization free energy of solvation -58.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds