Wall clock time and date at job start Mon Mar 30 2020 06:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35559 * 117.00068 * 2 1 4 4 C 1.40937 * 120.04671 * 269.97250 * 3 2 1 5 5 C 1.46445 * 128.90059 * 0.06533 * 4 3 2 6 6 C 1.43198 * 122.87848 * 359.95837 * 5 4 3 7 7 N 3.26303 * 82.16121 * 254.36628 * 2 1 3 8 8 C 1.33845 * 114.24632 * 179.97438 * 5 4 3 9 9 S 1.75204 * 111.27529 * 0.02562 * 8 5 4 10 10 C 1.39488 * 119.12382 * 180.02562 * 4 3 2 11 11 C 1.40757 * 120.14251 * 0.02562 * 10 4 3 12 12 C 1.35599 * 121.05867 * 359.97438 * 11 10 4 13 13 C 1.40682 * 120.05080 * 89.99802 * 3 2 1 14 14 C 1.41025 * 120.16063 * 0.24936 * 13 3 2 15 15 H 1.08004 * 119.99795 * 24.73519 * 14 13 3 16 16 C 1.39819 * 120.00038 * 204.72721 * 14 13 3 17 17 N 1.30960 * 119.99832 * 17.81824 * 16 14 13 18 18 Si 1.86797 * 120.00116 * 197.82253 * 16 14 13 19 19 H 1.48507 * 109.47287 * 59.99683 * 18 16 14 20 20 H 1.48499 * 109.47444 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47045 * 300.00024 * 18 16 14 22 22 H 1.08999 * 109.47270 * 179.97438 * 1 2 3 23 23 H 1.08991 * 109.47556 * 300.00415 * 1 2 3 24 24 H 1.09001 * 109.47038 * 60.00259 * 1 2 3 25 25 H 1.08007 * 124.36538 * 180.02562 * 8 5 4 26 26 H 1.07997 * 119.47045 * 179.97438 * 11 10 4 27 27 H 1.07999 * 119.95372 * 180.02562 * 12 11 10 28 28 H 0.97000 * 119.99628 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0444 1.2078 0.0000 4 6 2.3653 1.8363 -1.2200 5 6 2.1259 1.3679 -2.5867 6 6 1.4891 0.1193 -2.8801 7 7 0.9839 -0.8711 -3.1129 8 6 2.5536 2.2066 -3.5380 9 16 3.2851 3.6382 -2.8415 10 6 2.9989 3.0788 -1.1975 11 6 3.3113 3.6908 0.0310 12 6 3.0056 3.0920 1.2086 13 6 2.3642 1.8355 1.2177 14 6 2.0508 1.2089 2.4416 15 1 1.9471 0.1348 2.4874 16 6 1.8745 1.9781 3.5958 17 7 1.6520 3.2649 3.4975 18 14 1.9563 1.1703 5.2781 19 1 3.2911 0.5463 5.4632 20 1 1.7381 2.1950 6.3305 21 1 0.9042 0.1271 5.3780 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8898 24 1 -0.3633 0.5138 -0.8900 25 1 2.4599 2.0244 -4.5985 26 1 3.8024 4.6526 0.0357 27 1 3.2532 3.5779 2.1408 28 1 1.5293 3.7984 4.2982 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396220038.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:24 Heat of formation + Delta-G solvation = 25.562396 kcal Electronic energy + Delta-G solvation = -16388.747393 eV Core-core repulsion = 13689.317872 eV Total energy + Delta-G solvation = -2699.429520 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.97044 -36.56962 -36.07225 -34.72359 -33.09514 -29.69117 -28.40642 -26.30222 -25.28743 -23.77309 -21.29344 -20.79603 -18.02995 -17.16433 -16.48905 -15.63239 -15.39109 -14.63456 -14.48183 -13.92870 -13.73279 -13.44570 -13.16714 -12.69797 -12.54699 -12.16586 -12.01461 -11.65119 -11.50712 -11.23502 -11.04706 -10.95099 -10.48030 -10.45881 -10.12543 -9.83304 -9.39265 -8.79600 -8.43105 -7.64409 -7.18233 -6.88262 -4.60174 1.20653 2.11230 2.33285 2.61362 2.67270 2.93550 2.95013 3.00697 3.25511 3.73060 3.95095 4.24655 4.68258 4.88149 5.14063 5.42161 5.93228 6.04910 6.09418 6.18295 6.27120 6.40019 6.55491 6.73126 6.85287 6.99486 7.16505 7.36718 7.61379 7.83331 8.03388 8.13587 8.41315 8.53483 8.92052 9.83694 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.024327 B = 0.007773 C = 0.006086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.688310 B = 3601.474412 C = 4599.864129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.318 6.318 3 C -0.028 4.028 4 C -0.026 4.026 5 C -0.029 4.029 6 C 0.288 3.712 7 N -0.437 5.437 8 C -0.155 4.155 9 S 0.078 5.922 10 C -0.226 4.226 11 C -0.078 4.078 12 C -0.110 4.110 13 C 0.107 3.893 14 C -0.429 4.429 15 H 0.091 0.909 16 C 0.073 3.927 17 N -0.782 5.782 18 Si 0.916 3.084 19 H -0.259 1.259 20 H -0.276 1.276 21 H -0.262 1.262 22 H 0.070 0.930 23 H 0.045 0.955 24 H 0.023 0.977 25 H 0.164 0.836 26 H 0.102 0.898 27 H 0.133 0.867 28 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.533 2.860 -3.942 5.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.234 6.234 3 C -0.076 4.076 4 C -0.033 4.033 5 C -0.048 4.048 6 C -0.028 4.028 7 N -0.114 5.114 8 C -0.294 4.294 9 S 0.341 5.659 10 C -0.341 4.341 11 C -0.100 4.100 12 C -0.131 4.131 13 C 0.103 3.897 14 C -0.456 4.456 15 H 0.109 0.891 16 C -0.147 4.147 17 N -0.405 5.405 18 Si 0.740 3.260 19 H -0.184 1.184 20 H -0.201 1.201 21 H -0.187 1.187 22 H 0.088 0.912 23 H 0.063 0.937 24 H 0.042 0.958 25 H 0.181 0.819 26 H 0.120 0.880 27 H 0.151 0.849 28 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.445 2.693 -4.788 5.680 hybrid contribution -0.732 -0.863 1.427 1.821 sum 0.713 1.830 -3.361 3.893 Atomic orbital electron populations 1.22778 0.82891 1.00633 0.99499 1.85966 1.17538 1.25930 1.93973 1.18177 1.08455 0.91308 0.89661 1.18675 1.00955 0.93485 0.90140 1.15891 1.05213 0.90362 0.93318 1.25099 0.92931 0.92342 0.92474 1.81084 1.10263 1.10749 1.09256 1.25166 1.03827 0.98414 1.02020 1.83419 1.63622 1.20280 0.98540 1.21611 1.17199 0.99738 0.95560 1.19842 1.01405 0.98613 0.90109 1.21029 0.98655 0.96765 0.96680 1.17671 0.89370 0.90968 0.91687 1.19588 1.38789 0.95894 0.91378 0.89112 1.26069 0.91804 0.94666 1.02162 1.69834 1.31148 1.06956 1.32586 0.86207 0.80483 0.79846 0.79489 1.18379 1.20089 1.18664 0.91167 0.93672 0.95832 0.81883 0.88011 0.84942 0.90116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 10.67 101.05 1.08 1.85 15 2 O -0.32 -7.54 8.43 -18.37 -0.15 -7.69 15 3 C -0.03 -0.67 5.81 -37.64 -0.22 -0.89 15 4 C -0.03 -0.56 6.01 -105.11 -0.63 -1.19 15 5 C -0.03 -0.55 5.82 -106.21 -0.62 -1.17 15 6 C 0.29 5.68 13.31 -22.48 -0.30 5.38 15 7 N -0.44 -8.88 18.54 41.83 0.78 -8.11 15 8 C -0.16 -2.44 10.83 29.19 0.32 -2.12 15 9 S 0.08 1.24 23.21 -107.50 -2.50 -1.26 15 10 C -0.23 -4.62 6.48 -38.16 -0.25 -4.87 15 11 C -0.08 -1.61 9.98 -39.57 -0.39 -2.01 15 12 C -0.11 -2.54 8.61 -39.45 -0.34 -2.88 15 13 C 0.11 2.65 5.57 -106.84 -0.59 2.05 15 14 C -0.43 -10.50 8.68 -37.94 -0.33 -10.82 15 15 H 0.09 2.24 7.63 -52.48 -0.40 1.84 15 16 C 0.07 1.66 5.13 -17.33 -0.09 1.57 15 17 N -0.78 -17.96 10.97 55.54 0.61 -17.35 15 18 Si 0.92 17.19 29.59 -169.99 -5.03 12.16 15 19 H -0.26 -4.87 7.11 56.52 0.40 -4.47 15 20 H -0.28 -5.01 7.11 56.52 0.40 -4.61 15 21 H -0.26 -4.95 7.11 56.52 0.40 -4.55 15 22 H 0.07 1.30 8.14 -51.93 -0.42 0.88 15 23 H 0.04 0.95 8.14 -51.93 -0.42 0.53 15 24 H 0.02 0.47 7.59 -51.93 -0.39 0.08 15 25 H 0.16 1.97 8.06 -52.48 -0.42 1.54 15 26 H 0.10 1.84 8.06 -52.49 -0.42 1.41 15 27 H 0.13 3.06 6.17 -52.49 -0.32 2.73 15 28 H 0.29 5.99 8.30 -40.82 -0.34 5.65 15 LS Contribution 271.05 15.07 4.08 4.08 Total: -1.00 -25.70 271.05 -6.52 -32.22 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -1.94 Total: 1.04 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -2.37 Total: -15.10 kcal Atomic # 7 Polarization: -26.84 SS G_CDS: 1.39 Total: -25.46 kcal Atomic # 8 Polarization: -7.54 SS G_CDS: -0.15 Total: -7.69 kcal Atomic # 14 Polarization: 17.19 SS G_CDS: -5.03 Total: 12.16 kcal Atomic # 16 Polarization: 1.24 SS G_CDS: -2.50 Total: -1.26 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -25.70 -6.52 -32.22 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396220038.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.780 kcal (2) G-P(sol) polarization free energy of solvation -25.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds