Wall clock time and date at job start Mon Mar 30 2020 06:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.41239 * 119.99948 * 262.52055 * 3 2 1 5 5 S 1.75762 * 130.26123 * 359.68782 * 4 3 2 6 6 C 1.69989 * 93.21976 * 179.97438 * 5 4 3 7 7 C 1.36390 * 111.94901 * 0.34709 * 6 5 4 8 8 C 1.40787 * 123.29979 * 179.77969 * 7 6 5 9 9 H 1.07996 * 120.00872 * 159.13851 * 8 7 6 10 10 C 1.39752 * 119.99750 * 339.13438 * 8 7 6 11 11 N 1.31058 * 119.99756 * 344.93093 * 10 8 7 12 12 Si 1.86798 * 120.00361 * 164.92742 * 10 8 7 13 13 H 1.48501 * 109.46905 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.47019 * 119.99790 * 12 10 8 15 15 H 1.48489 * 109.47354 * 240.00129 * 12 10 8 16 16 C 1.39256 * 119.51464 * 180.02562 * 4 3 2 17 17 C 1.40553 * 119.32191 * 0.02562 * 16 4 3 18 18 C 1.37665 * 120.66454 * 0.02562 * 17 16 4 19 19 C 1.38204 * 120.47812 * 359.96398 * 18 17 16 20 20 C 1.50697 * 119.98716 * 180.02562 * 19 18 17 21 21 O 1.42899 * 109.47732 * 0.03176 * 20 19 18 22 22 H 1.08006 * 124.02199 * 180.09090 * 6 5 4 23 23 H 0.97006 * 119.99438 * 179.97438 * 11 10 8 24 24 H 1.07998 * 119.66773 * 179.97438 * 17 16 4 25 25 H 1.08002 * 119.75898 * 179.97438 * 18 17 16 26 26 H 1.09009 * 109.46848 * 120.02868 * 20 19 18 27 27 H 1.08997 * 109.47421 * 240.02427 * 20 19 18 28 28 H 0.96699 * 114.00222 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2741 0.1602 1.2128 5 16 2.6804 0.3825 2.8521 6 6 4.2456 0.4632 3.5103 7 6 5.2086 0.3382 2.5526 8 6 6.5876 0.3755 2.8335 9 1 7.2927 -0.0515 2.1358 10 6 7.0442 0.9653 4.0153 11 7 6.2464 1.7352 4.7141 12 14 8.7915 0.6561 4.5992 13 1 9.4826 -0.2415 3.6389 14 1 9.5211 1.9468 4.6827 15 1 8.7599 0.0176 5.9394 16 6 4.6667 0.1598 1.2010 17 6 5.3446 0.0009 -0.0199 18 6 4.6460 -0.1528 -1.1961 19 6 3.2640 -0.1540 -1.1955 20 6 2.5104 -0.3237 -2.4895 21 8 3.4388 -0.4641 -3.5667 22 1 4.4528 0.6015 4.5613 23 1 6.5633 2.1443 5.5347 24 1 6.4245 0.0002 -0.0355 25 1 5.1819 -0.2733 -2.1260 26 1 1.8842 -1.2140 -2.4312 27 1 1.8832 0.5509 -2.6621 28 1 3.0228 -0.5771 -4.4323 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396220097.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:51 Heat of formation + Delta-G solvation = 7.933561 kcal Electronic energy + Delta-G solvation = -15829.491212 eV Core-core repulsion = 13129.297248 eV Total energy + Delta-G solvation = -2700.193964 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.27990 -36.87413 -36.24534 -34.84890 -32.56779 -30.84259 -29.34405 -26.38928 -25.33585 -23.11832 -21.64491 -20.02247 -18.19438 -17.43279 -16.69160 -15.92962 -15.15562 -15.07422 -14.66155 -14.46214 -13.86680 -13.55883 -13.13309 -12.79909 -12.55045 -12.36106 -12.26558 -11.55968 -11.48360 -11.27117 -11.02965 -10.75587 -10.67634 -10.38799 -10.18551 -9.87778 -9.50332 -9.29722 -8.64261 -7.53682 -6.91175 -6.75682 -4.39923 1.12829 1.73026 2.59266 2.87471 2.96450 3.05833 3.10179 3.21746 3.66618 3.78686 3.91727 4.15725 4.30966 4.32574 5.02540 5.18463 5.25185 5.41906 5.56814 5.86330 5.92305 6.15298 6.36396 6.74754 6.77200 6.93093 7.08945 7.30032 7.55350 7.60868 7.79594 7.86502 8.35375 8.67409 8.78342 10.17942 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.026563 B = 0.006486 C = 0.005279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.857487 B = 4315.976470 C = 5302.387750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C 0.266 3.734 3 C -0.023 4.023 4 C -0.106 4.106 5 S 0.063 5.937 6 C -0.361 4.361 7 C 0.083 3.917 8 C -0.432 4.432 9 H 0.079 0.921 10 C 0.070 3.930 11 N -0.793 5.793 12 Si 0.912 3.088 13 H -0.260 1.260 14 H -0.275 1.275 15 H -0.273 1.273 16 C -0.062 4.062 17 C -0.040 4.040 18 C -0.128 4.128 19 C -0.041 4.041 20 C 0.119 3.881 21 O -0.564 6.564 22 H 0.164 0.836 23 H 0.279 0.721 24 H 0.129 0.871 25 H 0.136 0.864 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.087 -2.722 -9.137 9.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.115 5.115 2 C -0.048 4.048 3 C -0.033 4.033 4 C -0.224 4.224 5 S 0.328 5.672 6 C -0.497 4.497 7 C 0.074 3.926 8 C -0.465 4.465 9 H 0.097 0.903 10 C -0.147 4.147 11 N -0.419 5.419 12 Si 0.736 3.264 13 H -0.184 1.184 14 H -0.201 1.201 15 H -0.198 1.198 16 C -0.072 4.072 17 C -0.061 4.061 18 C -0.150 4.150 19 C -0.046 4.046 20 C 0.041 3.959 21 O -0.369 6.369 22 H 0.181 0.819 23 H 0.089 0.911 24 H 0.146 0.854 25 H 0.154 0.846 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -3.794 -2.389 -7.628 8.848 hybrid contribution 2.260 -0.078 -0.480 2.311 sum -1.534 -2.467 -8.108 8.613 Atomic orbital electron populations 1.81143 1.11912 1.10453 1.07951 1.25792 0.92742 0.93067 0.93167 1.14864 0.83247 1.12881 0.92328 1.22614 0.97035 1.05825 0.96954 1.82158 1.12339 1.77451 0.95220 1.24328 0.91625 1.30120 1.03617 1.17286 0.94461 0.94633 0.86182 1.18989 0.91167 1.32562 1.03764 0.90298 1.25810 0.99829 0.92900 0.96170 1.69869 1.37141 1.21520 1.13331 0.86197 0.81745 0.79044 0.79388 1.18400 1.20060 1.19835 1.19739 0.90938 1.01160 0.95406 1.21169 1.00128 0.94330 0.90430 1.20491 0.92507 1.03773 0.98263 1.19259 0.94385 0.99819 0.91118 1.20830 0.90131 0.99965 0.84925 1.86462 1.35960 1.96410 1.18050 0.81917 0.91055 0.85357 0.84619 0.92346 0.92338 0.77304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -8.16 18.54 41.84 0.78 -7.38 15 2 C 0.27 4.82 14.08 -22.47 -0.32 4.50 15 3 C -0.02 -0.42 5.77 -106.48 -0.61 -1.03 15 4 C -0.11 -2.24 6.31 -38.06 -0.24 -2.48 15 5 S 0.06 1.39 22.64 -107.50 -2.43 -1.04 15 6 C -0.36 -9.05 9.51 30.07 0.29 -8.76 15 7 C 0.08 2.07 5.69 -106.18 -0.60 1.46 15 8 C -0.43 -10.76 9.06 -38.05 -0.34 -11.11 15 9 H 0.08 1.84 7.66 -52.49 -0.40 1.44 15 10 C 0.07 1.69 5.31 -17.32 -0.09 1.60 15 11 N -0.79 -19.98 10.90 55.54 0.61 -19.37 15 12 Si 0.91 18.06 29.59 -169.99 -5.03 13.04 15 13 H -0.26 -5.05 7.11 56.52 0.40 -4.65 15 14 H -0.28 -5.40 7.11 56.52 0.40 -5.00 15 15 H -0.27 -5.39 7.11 56.52 0.40 -4.99 15 16 C -0.06 -1.37 6.02 -105.23 -0.63 -2.00 15 17 C -0.04 -0.75 9.85 -38.92 -0.38 -1.13 15 18 C -0.13 -2.10 9.33 -39.80 -0.37 -2.47 15 19 C -0.04 -0.67 5.91 -104.28 -0.62 -1.28 15 20 C 0.12 1.49 6.42 36.00 0.23 1.72 15 21 O -0.56 -6.23 12.13 -35.23 -0.43 -6.66 15 22 H 0.16 4.33 6.31 -52.48 -0.33 4.00 15 23 H 0.28 6.41 8.30 -40.82 -0.34 6.08 15 24 H 0.13 2.19 7.83 -52.49 -0.41 1.78 15 25 H 0.14 1.96 6.99 -52.49 -0.37 1.59 15 26 H 0.06 0.68 8.14 -51.92 -0.42 0.25 15 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 15 28 H 0.38 2.21 9.12 45.56 0.42 2.63 15 LS Contribution 270.84 15.07 4.08 4.08 Total: -1.00 -27.73 270.84 -7.20 -34.93 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -1.07 Total: 3.39 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: -3.70 Total: -20.98 kcal Atomic # 7 Polarization: -28.13 SS G_CDS: 1.38 Total: -26.75 kcal Atomic # 8 Polarization: -6.23 SS G_CDS: -0.43 Total: -6.66 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.03 Total: 13.04 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -2.43 Total: -1.04 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -27.73 -7.20 -34.93 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396220097.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.864 kcal (2) G-P(sol) polarization free energy of solvation -27.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds