Wall clock time and date at job start Mon Mar 30 2020 06:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.41239 * 119.99948 * 262.52055 * 3 2 1 5 5 S 1.75762 * 130.26123 * 359.68782 * 4 3 2 6 6 C 1.69989 * 93.21976 * 179.97438 * 5 4 3 7 7 C 1.36390 * 111.94901 * 0.34709 * 6 5 4 8 8 C 1.40787 * 123.29979 * 179.77969 * 7 6 5 9 9 H 1.07996 * 120.00872 * 159.13851 * 8 7 6 10 10 C 1.39752 * 119.99750 * 339.13438 * 8 7 6 11 11 N 1.31058 * 119.99756 * 344.93093 * 10 8 7 12 12 Si 1.86798 * 120.00361 * 164.92742 * 10 8 7 13 13 H 1.48501 * 109.46905 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.47019 * 119.99790 * 12 10 8 15 15 H 1.48489 * 109.47354 * 240.00129 * 12 10 8 16 16 C 1.39256 * 119.51464 * 180.02562 * 4 3 2 17 17 C 1.40553 * 119.32191 * 0.02562 * 16 4 3 18 18 C 1.37665 * 120.66454 * 0.02562 * 17 16 4 19 19 C 1.38204 * 120.47812 * 359.96398 * 18 17 16 20 20 C 1.50697 * 119.98716 * 180.02562 * 19 18 17 21 21 O 1.42899 * 109.47732 * 0.03176 * 20 19 18 22 22 H 1.08006 * 124.02199 * 180.09090 * 6 5 4 23 23 H 0.97006 * 119.99438 * 179.97438 * 11 10 8 24 24 H 1.07998 * 119.66773 * 179.97438 * 17 16 4 25 25 H 1.08002 * 119.75898 * 179.97438 * 18 17 16 26 26 H 1.09009 * 109.46848 * 120.02868 * 20 19 18 27 27 H 1.08997 * 109.47421 * 240.02427 * 20 19 18 28 28 H 0.96699 * 114.00222 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2741 0.1602 1.2128 5 16 2.6804 0.3825 2.8521 6 6 4.2456 0.4632 3.5103 7 6 5.2086 0.3382 2.5526 8 6 6.5876 0.3755 2.8335 9 1 7.2927 -0.0515 2.1358 10 6 7.0442 0.9653 4.0153 11 7 6.2464 1.7352 4.7141 12 14 8.7915 0.6561 4.5992 13 1 9.4826 -0.2415 3.6389 14 1 9.5211 1.9468 4.6827 15 1 8.7599 0.0176 5.9394 16 6 4.6667 0.1598 1.2010 17 6 5.3446 0.0009 -0.0199 18 6 4.6460 -0.1528 -1.1961 19 6 3.2640 -0.1540 -1.1955 20 6 2.5104 -0.3237 -2.4895 21 8 3.4388 -0.4641 -3.5667 22 1 4.4528 0.6015 4.5613 23 1 6.5633 2.1443 5.5347 24 1 6.4245 0.0002 -0.0355 25 1 5.1819 -0.2733 -2.1260 26 1 1.8842 -1.2140 -2.4312 27 1 1.8832 0.5509 -2.6621 28 1 3.0228 -0.5771 -4.4323 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396220097.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:51 Heat of formation + Delta-G solvation = -8.891050 kcal Electronic energy + Delta-G solvation = -15830.220782 eV Core-core repulsion = 13129.297248 eV Total energy + Delta-G solvation = -2700.923534 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.72961 -38.09748 -37.58813 -36.41724 -34.22621 -32.30710 -30.85834 -28.14672 -26.67918 -24.65854 -23.11625 -21.65314 -19.78719 -18.47654 -18.34620 -17.49670 -16.79306 -16.12127 -16.10690 -15.79084 -15.40591 -14.92615 -14.76582 -14.27567 -13.95582 -13.90016 -13.73080 -13.20686 -13.11614 -12.74140 -12.64329 -12.17553 -12.16095 -11.87490 -11.71908 -11.26611 -11.11302 -10.95197 -10.21566 -9.14963 -8.67297 -8.52882 -6.28595 -0.33307 0.18629 0.96304 1.26688 1.42546 1.50537 1.57222 1.69265 1.90048 2.14291 2.24868 2.77762 2.85211 3.21520 3.37114 3.87671 4.06946 4.32268 4.41057 4.47647 4.48635 4.68329 4.92888 5.16808 5.24095 5.40317 5.47599 5.64967 5.93348 5.97863 6.34495 6.50908 6.82558 6.94334 6.96587 8.39141 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.026563 B = 0.006486 C = 0.005279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.857487 B = 4315.976470 C = 5302.387750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C 0.276 3.724 3 C -0.029 4.029 4 C -0.114 4.114 5 S 0.060 5.940 6 C -0.396 4.396 7 C 0.065 3.935 8 C -0.460 4.460 9 H 0.088 0.912 10 C 0.027 3.973 11 N -0.828 5.828 12 Si 0.985 3.015 13 H -0.250 1.250 14 H -0.269 1.269 15 H -0.273 1.273 16 C -0.094 4.094 17 C -0.040 4.040 18 C -0.112 4.112 19 C -0.024 4.024 20 C 0.123 3.877 21 O -0.572 6.572 22 H 0.137 0.863 23 H 0.284 0.716 24 H 0.141 0.859 25 H 0.166 0.834 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.437 -3.333 -11.930 12.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.122 5.122 2 C -0.038 4.038 3 C -0.039 4.039 4 C -0.232 4.232 5 S 0.324 5.676 6 C -0.531 4.531 7 C 0.056 3.944 8 C -0.493 4.493 9 H 0.106 0.894 10 C -0.187 4.187 11 N -0.454 5.454 12 Si 0.806 3.194 13 H -0.173 1.173 14 H -0.194 1.194 15 H -0.198 1.198 16 C -0.104 4.104 17 C -0.061 4.061 18 C -0.134 4.134 19 C -0.029 4.029 20 C 0.045 3.955 21 O -0.382 6.382 22 H 0.154 0.846 23 H 0.094 0.906 24 H 0.159 0.841 25 H 0.183 0.817 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -3.163 -3.007 -10.467 11.340 hybrid contribution 2.008 0.097 0.191 2.020 sum -1.155 -2.910 -10.276 10.742 Atomic orbital electron populations 1.81159 1.12056 1.10770 1.08202 1.25639 0.92481 0.92747 0.92902 1.14920 0.83404 1.13453 0.92159 1.22722 0.97102 1.06349 0.97021 1.81829 1.10648 1.78691 0.96429 1.24148 0.93624 1.32569 1.02795 1.17712 0.94832 0.94035 0.87810 1.19366 0.91622 1.33399 1.04866 0.89367 1.26751 1.04048 0.92088 0.95827 1.69974 1.39240 1.22345 1.13864 0.85094 0.76454 0.79087 0.78729 1.17329 1.19417 1.19769 1.19794 0.91544 1.03560 0.95457 1.21394 1.01000 0.93750 0.89921 1.20816 0.92645 1.01578 0.98327 1.19777 0.94645 0.96332 0.92139 1.20777 0.89785 1.01324 0.83569 1.86382 1.36170 1.96449 1.19180 0.84567 0.90593 0.84074 0.81665 0.90750 0.90886 0.74306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -15.82 18.54 19.00 0.35 -15.46 15 2 C 0.28 9.51 14.08 88.33 1.24 10.76 15 3 C -0.03 -1.01 5.77 -21.07 -0.12 -1.13 15 4 C -0.11 -4.83 6.31 23.25 0.15 -4.69 15 5 S 0.06 2.75 22.64 -56.49 -1.28 1.47 15 6 C -0.40 -20.99 9.51 67.39 0.64 -20.35 15 7 C 0.06 3.36 5.69 -20.87 -0.12 3.24 15 8 C -0.46 -23.48 9.06 23.26 0.21 -23.26 15 9 H 0.09 4.15 7.66 -2.91 -0.02 4.13 15 10 C 0.03 1.32 5.31 85.17 0.45 1.77 15 11 N -0.83 -43.42 10.90 21.80 0.24 -43.19 15 12 Si 0.99 37.28 29.59 68.60 2.03 39.31 15 13 H -0.25 -8.96 7.11 99.48 0.71 -8.25 15 14 H -0.27 -9.85 7.11 99.48 0.71 -9.14 15 15 H -0.27 -10.20 7.11 99.48 0.71 -9.49 15 16 C -0.09 -4.17 6.02 -20.26 -0.12 -4.30 15 17 C -0.04 -1.44 9.85 22.70 0.22 -1.21 15 18 C -0.11 -3.29 9.33 22.13 0.21 -3.08 15 19 C -0.02 -0.71 5.91 -19.64 -0.12 -0.82 15 20 C 0.12 2.53 6.42 71.24 0.46 2.98 15 21 O -0.57 -9.73 12.13 -148.98 -1.81 -11.54 15 22 H 0.14 7.81 6.31 -2.91 -0.02 7.80 15 23 H 0.28 13.56 8.30 -92.70 -0.77 12.79 15 24 H 0.14 4.59 7.83 -2.91 -0.02 4.56 15 25 H 0.17 3.96 6.99 -2.91 -0.02 3.94 15 26 H 0.07 1.37 8.14 -2.38 -0.02 1.35 15 27 H 0.07 1.37 8.14 -2.39 -0.02 1.35 15 28 H 0.41 2.62 9.12 -74.06 -0.68 1.94 15 Total: -1.00 -61.71 270.84 3.19 -58.52 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 0.55 Total: 10.98 kcal Atomic # 6 Polarization: -43.19 SS G_CDS: 3.10 Total: -40.09 kcal Atomic # 7 Polarization: -59.24 SS G_CDS: 0.59 Total: -58.65 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: -1.81 Total: -11.54 kcal Atomic # 14 Polarization: 37.28 SS G_CDS: 2.03 Total: 39.31 kcal Atomic # 16 Polarization: 2.75 SS G_CDS: -1.28 Total: 1.47 kcal Total: -61.71 3.19 -58.52 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396220097.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.629 kcal (2) G-P(sol) polarization free energy of solvation -61.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds