Wall clock time and date at job start Mon Mar 30 2020 06:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.35360 * 124.73832 * 126.07570 * 3 2 1 5 5 C 1.39779 * 115.42702 * 180.02562 * 4 3 2 6 6 C 1.42305 * 128.35892 * 179.72047 * 5 4 3 7 7 C 1.35032 * 120.88076 * 179.81232 * 6 5 4 8 8 C 1.50699 * 119.79675 * 180.21996 * 7 6 5 9 9 O 1.42898 * 109.47095 * 0.26906 * 8 7 6 10 10 C 1.41375 * 120.40037 * 0.48813 * 7 6 5 11 11 C 1.40861 * 120.17979 * 179.77108 * 10 7 6 12 12 H 1.08000 * 120.00632 * 334.08542 * 11 10 7 13 13 C 1.40027 * 119.99908 * 154.08019 * 11 10 7 14 14 N 1.30793 * 119.99709 * 342.99210 * 13 11 10 15 15 Si 1.86791 * 120.00182 * 162.99172 * 13 11 10 16 16 H 1.48499 * 109.47020 * 90.00290 * 15 13 11 17 17 H 1.48498 * 109.47466 * 209.99783 * 15 13 11 18 18 H 1.48499 * 109.47442 * 330.00537 * 15 13 11 19 19 C 1.40340 * 119.63514 * 359.75525 * 10 7 6 20 20 C 1.38971 * 120.02877 * 359.97438 * 19 10 7 21 21 S 1.75458 * 124.74010 * 306.09792 * 3 2 1 22 22 H 1.07999 * 122.28465 * 0.04284 * 4 3 2 23 23 H 1.08001 * 119.55647 * 0.27572 * 6 5 4 24 24 H 1.09004 * 109.47089 * 120.26798 * 8 7 6 25 25 H 1.08994 * 109.47186 * 240.26527 * 8 7 6 26 26 H 0.96710 * 113.99840 * 180.02562 * 9 8 7 27 27 H 0.97003 * 119.99741 * 179.97438 * 14 13 11 28 28 H 1.08004 * 119.98637 * 179.97438 * 19 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3390 0.6560 -0.8990 5 6 4.7185 0.5230 -0.7166 6 6 5.7703 1.0832 -1.4944 7 6 7.0631 0.8574 -1.1767 8 6 8.1575 1.4669 -2.0145 9 8 7.5772 2.2363 -3.0696 10 6 7.3962 0.0481 -0.0665 11 6 8.7464 -0.1883 0.2578 12 1 9.5038 -0.1343 -0.5102 13 6 9.1068 -0.4933 1.5761 14 7 8.2784 -0.2394 2.5559 15 14 10.7706 -1.2627 1.9354 16 1 11.7706 -0.1909 2.1729 17 1 10.6687 -2.1209 3.1430 18 1 11.1952 -2.0877 0.7760 19 6 6.3742 -0.5182 0.7110 20 6 5.0432 -0.2821 0.3886 21 16 3.5683 -0.8484 1.1650 22 1 2.9172 1.2419 -1.7023 23 1 5.5312 1.7033 -2.3457 24 1 8.7753 2.1132 -1.3909 25 1 8.7740 0.6747 -2.4391 26 1 8.2249 2.6586 -3.6505 27 1 8.5279 -0.4510 3.4691 28 1 6.6222 -1.1377 1.5602 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396220200.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:39 Heat of formation + Delta-G solvation = 3.772253 kcal Electronic energy + Delta-G solvation = -15787.611021 eV Core-core repulsion = 13087.236609 eV Total energy + Delta-G solvation = -2700.374412 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.72325 -36.64321 -36.00337 -35.01744 -33.15006 -30.23587 -29.51629 -26.28214 -25.19703 -22.94096 -21.31265 -19.74006 -18.08724 -17.62268 -16.69744 -15.72310 -15.30735 -14.63817 -14.32766 -14.07865 -13.75751 -13.50254 -12.93074 -12.71899 -12.53843 -12.31322 -12.15156 -11.80047 -11.56114 -11.37498 -11.23623 -10.82805 -10.37895 -10.24967 -10.08881 -9.68042 -9.58193 -9.27389 -8.61773 -7.54698 -7.24927 -6.83181 -4.75908 1.23515 2.13236 2.52518 2.68844 2.82982 2.84069 2.86859 3.07444 3.55579 3.56668 3.86316 4.25349 4.64039 4.76735 5.12591 5.74540 5.85769 5.94517 6.12871 6.19205 6.43087 6.52647 6.59505 6.72798 7.00897 7.01971 7.33006 7.45203 7.56565 7.73800 8.01325 8.02867 8.11220 8.31329 8.41286 9.64138 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.021209 B = 0.006805 C = 0.005234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.871449 B = 4113.349666 C = 5348.315118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C 0.306 3.694 3 C -0.231 4.231 4 C 0.017 3.983 5 C -0.224 4.224 6 C -0.013 4.013 7 C -0.174 4.174 8 C 0.137 3.863 9 O -0.577 6.577 10 C 0.140 3.860 11 C -0.420 4.420 12 H 0.091 0.909 13 C 0.070 3.930 14 N -0.754 5.754 15 Si 0.915 3.085 16 H -0.265 1.265 17 H -0.271 1.271 18 H -0.256 1.256 19 C -0.165 4.165 20 C -0.056 4.056 21 S 0.063 5.937 22 H 0.128 0.872 23 H 0.114 0.886 24 H 0.052 0.948 25 H 0.047 0.953 26 H 0.371 0.629 27 H 0.292 0.708 28 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.023 0.745 -3.421 6.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.143 5.143 2 C -0.007 4.007 3 C -0.349 4.349 4 C -0.018 4.018 5 C -0.229 4.229 6 C -0.034 4.034 7 C -0.175 4.175 8 C 0.060 3.940 9 O -0.381 6.381 10 C 0.133 3.867 11 C -0.448 4.448 12 H 0.109 0.891 13 C -0.154 4.154 14 N -0.376 5.376 15 Si 0.738 3.262 16 H -0.189 1.189 17 H -0.195 1.195 18 H -0.179 1.179 19 C -0.193 4.193 20 C -0.172 4.172 21 S 0.325 5.675 22 H 0.146 0.854 23 H 0.132 0.868 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.216 0.784 27 H 0.104 0.896 28 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.221 -0.361 -1.628 2.777 hybrid contribution 1.958 0.753 -1.031 2.337 sum 4.180 0.392 -2.658 4.969 Atomic orbital electron populations 1.81167 1.11571 1.11589 1.09993 1.24604 0.91250 0.92242 0.92609 1.18949 0.87751 1.18861 1.09316 1.20177 0.92140 0.94045 0.95414 1.17559 0.91938 1.11318 1.02062 1.20151 0.91078 0.95841 0.96328 1.19197 0.93279 1.04238 1.00775 1.20681 0.93580 0.92806 0.86910 1.86447 1.37875 1.69462 1.44354 1.17234 0.93247 0.87207 0.89056 1.19807 0.93484 1.37172 0.94339 0.89088 1.26139 1.00145 0.93179 0.95898 1.69791 1.36228 1.30052 1.01539 0.86158 0.80561 0.79953 0.79513 1.18947 1.19510 1.17907 1.20482 0.87656 1.06555 1.04604 1.22506 0.96723 1.00363 0.97574 1.83669 0.95593 1.55895 1.32388 0.85376 0.86795 0.93025 0.93512 0.78367 0.89639 0.85569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -9.25 18.54 41.84 0.78 -8.47 15 2 C 0.31 5.87 15.77 -22.47 -0.35 5.52 15 3 C -0.23 -4.46 6.23 -38.69 -0.24 -4.70 15 4 C 0.02 0.32 10.05 -40.03 -0.40 -0.09 15 5 C -0.22 -4.72 5.87 -106.89 -0.63 -5.35 15 6 C -0.01 -0.27 9.35 -39.16 -0.37 -0.64 15 7 C -0.17 -3.62 5.87 -104.57 -0.61 -4.24 15 8 C 0.14 2.34 6.22 36.01 0.22 2.56 15 9 O -0.58 -8.80 12.06 -35.23 -0.43 -9.22 15 10 C 0.14 3.16 5.55 -106.92 -0.59 2.56 15 11 C -0.42 -9.04 8.46 -37.92 -0.32 -9.36 15 12 H 0.09 1.79 6.99 -52.49 -0.37 1.42 15 13 C 0.07 1.46 5.14 -17.32 -0.09 1.37 15 14 N -0.75 -16.59 10.99 55.55 0.61 -15.98 15 15 Si 0.92 15.44 29.59 -169.99 -5.03 10.41 15 16 H -0.26 -4.42 7.11 56.52 0.40 -4.01 15 17 H -0.27 -4.56 7.11 56.52 0.40 -4.16 15 18 H -0.26 -4.28 7.11 56.52 0.40 -3.87 15 19 C -0.17 -3.84 8.71 -38.52 -0.34 -4.17 15 20 C -0.06 -1.23 6.45 -38.44 -0.25 -1.48 15 21 S 0.06 1.24 23.22 -107.50 -2.50 -1.26 15 22 H 0.13 2.08 8.06 -52.49 -0.42 1.65 15 23 H 0.11 2.18 6.88 -52.49 -0.36 1.82 15 24 H 0.05 0.86 8.14 -51.93 -0.42 0.44 15 25 H 0.05 0.74 7.78 -51.93 -0.40 0.34 15 26 H 0.37 3.60 9.12 45.56 0.42 4.01 15 27 H 0.29 5.79 8.30 -40.82 -0.34 5.46 15 28 H 0.13 3.02 6.20 -52.48 -0.33 2.69 15 LS Contribution 270.87 15.07 4.08 4.08 Total: -1.00 -25.20 270.87 -7.47 -32.67 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -1.02 Total: 5.79 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: -3.97 Total: -18.01 kcal Atomic # 7 Polarization: -25.84 SS G_CDS: 1.39 Total: -24.45 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: -0.43 Total: -9.22 kcal Atomic # 14 Polarization: 15.44 SS G_CDS: -5.03 Total: 10.41 kcal Atomic # 16 Polarization: 1.24 SS G_CDS: -2.50 Total: -1.26 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -25.20 -7.47 -32.67 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396220200.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.444 kcal (2) G-P(sol) polarization free energy of solvation -25.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds