Wall clock time and date at job start Mon Mar 30 2020 06:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.35360 * 124.73832 * 126.07570 * 3 2 1 5 5 C 1.39779 * 115.42702 * 180.02562 * 4 3 2 6 6 C 1.42305 * 128.35892 * 179.72047 * 5 4 3 7 7 C 1.35032 * 120.88076 * 179.81232 * 6 5 4 8 8 C 1.50699 * 119.79675 * 180.21996 * 7 6 5 9 9 O 1.42898 * 109.47095 * 0.26906 * 8 7 6 10 10 C 1.41375 * 120.40037 * 0.48813 * 7 6 5 11 11 C 1.40861 * 120.17979 * 179.77108 * 10 7 6 12 12 H 1.08000 * 120.00632 * 334.08542 * 11 10 7 13 13 C 1.40027 * 119.99908 * 154.08019 * 11 10 7 14 14 N 1.30793 * 119.99709 * 342.99210 * 13 11 10 15 15 Si 1.86791 * 120.00182 * 162.99172 * 13 11 10 16 16 H 1.48499 * 109.47020 * 90.00290 * 15 13 11 17 17 H 1.48498 * 109.47466 * 209.99783 * 15 13 11 18 18 H 1.48499 * 109.47442 * 330.00537 * 15 13 11 19 19 C 1.40340 * 119.63514 * 359.75525 * 10 7 6 20 20 C 1.38971 * 120.02877 * 359.97438 * 19 10 7 21 21 S 1.75458 * 124.74010 * 306.09792 * 3 2 1 22 22 H 1.07999 * 122.28465 * 0.04284 * 4 3 2 23 23 H 1.08001 * 119.55647 * 0.27572 * 6 5 4 24 24 H 1.09004 * 109.47089 * 120.26798 * 8 7 6 25 25 H 1.08994 * 109.47186 * 240.26527 * 8 7 6 26 26 H 0.96710 * 113.99840 * 180.02562 * 9 8 7 27 27 H 0.97003 * 119.99741 * 179.97438 * 14 13 11 28 28 H 1.08004 * 119.98637 * 179.97438 * 19 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3390 0.6560 -0.8990 5 6 4.7185 0.5230 -0.7166 6 6 5.7703 1.0832 -1.4944 7 6 7.0631 0.8574 -1.1767 8 6 8.1575 1.4669 -2.0145 9 8 7.5772 2.2363 -3.0696 10 6 7.3962 0.0481 -0.0665 11 6 8.7464 -0.1883 0.2578 12 1 9.5038 -0.1343 -0.5102 13 6 9.1068 -0.4933 1.5761 14 7 8.2784 -0.2394 2.5559 15 14 10.7706 -1.2627 1.9354 16 1 11.7706 -0.1909 2.1729 17 1 10.6687 -2.1209 3.1430 18 1 11.1952 -2.0877 0.7760 19 6 6.3742 -0.5182 0.7110 20 6 5.0432 -0.2821 0.3886 21 16 3.5683 -0.8484 1.1650 22 1 2.9172 1.2419 -1.7023 23 1 5.5312 1.7033 -2.3457 24 1 8.7753 2.1132 -1.3909 25 1 8.7740 0.6747 -2.4391 26 1 8.2249 2.6586 -3.6505 27 1 8.5279 -0.4510 3.4691 28 1 6.6222 -1.1377 1.5602 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396220200.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:39 Heat of formation + Delta-G solvation = -9.836420 kcal Electronic energy + Delta-G solvation = -15788.201137 eV Core-core repulsion = 13087.236609 eV Total energy + Delta-G solvation = -2700.964528 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.28762 -38.11274 -37.39687 -36.57156 -34.69646 -31.79602 -31.12100 -27.85328 -26.66363 -24.52363 -22.90537 -21.28622 -19.65165 -19.20861 -17.97200 -17.29240 -16.81141 -16.16448 -15.64241 -15.57754 -15.26493 -15.05890 -14.41454 -14.30979 -14.07980 -13.85470 -13.68981 -13.31143 -13.09791 -12.80642 -12.69887 -12.18646 -11.93060 -11.71051 -11.59979 -11.22088 -11.03855 -10.75937 -10.21473 -9.16919 -8.81107 -8.42687 -6.40663 -0.33431 0.54467 0.91692 1.20001 1.21603 1.44119 1.56515 1.62039 2.00912 2.15588 2.31148 2.68460 3.06475 3.49913 3.60796 4.22752 4.39901 4.54718 4.66169 4.85196 4.88713 4.97519 5.05842 5.17061 5.37421 5.40716 5.73533 5.84332 5.97785 6.12309 6.42924 6.46205 6.68673 6.79479 7.12091 8.11331 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.021209 B = 0.006805 C = 0.005234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.871449 B = 4113.349666 C = 5348.315118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C 0.318 3.682 3 C -0.230 4.230 4 C 0.023 3.977 5 C -0.236 4.236 6 C -0.020 4.020 7 C -0.187 4.187 8 C 0.146 3.854 9 O -0.586 6.586 10 C 0.117 3.883 11 C -0.438 4.438 12 H 0.106 0.894 13 C 0.035 3.965 14 N -0.790 5.790 15 Si 0.984 3.016 16 H -0.257 1.257 17 H -0.272 1.272 18 H -0.251 1.251 19 C -0.192 4.192 20 C -0.075 4.075 21 S 0.071 5.929 22 H 0.160 0.840 23 H 0.130 0.870 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.396 0.604 27 H 0.298 0.702 28 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.672 1.139 -4.458 7.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.152 5.152 2 C 0.005 3.995 3 C -0.347 4.347 4 C -0.011 4.011 5 C -0.241 4.241 6 C -0.040 4.040 7 C -0.188 4.188 8 C 0.069 3.931 9 O -0.394 6.394 10 C 0.110 3.890 11 C -0.465 4.465 12 H 0.124 0.876 13 C -0.186 4.186 14 N -0.412 5.412 15 Si 0.804 3.196 16 H -0.182 1.182 17 H -0.197 1.197 18 H -0.174 1.174 19 C -0.220 4.220 20 C -0.191 4.191 21 S 0.333 5.667 22 H 0.178 0.822 23 H 0.148 0.852 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.246 0.754 27 H 0.109 0.891 28 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.875 0.050 -2.687 3.936 hybrid contribution 1.672 0.663 -0.731 1.942 sum 4.548 0.714 -3.418 5.734 Atomic orbital electron populations 1.81187 1.11784 1.11908 1.10319 1.24431 0.90953 0.91882 0.92257 1.18985 0.87763 1.18788 1.09210 1.20389 0.91142 0.93682 0.95861 1.17864 0.93132 1.11258 1.01880 1.20366 0.90985 0.95952 0.96701 1.19618 0.94681 1.03797 1.00720 1.20506 0.92196 0.93287 0.87146 1.86370 1.39236 1.69477 1.44328 1.17569 0.93775 0.87796 0.89888 1.20141 0.93550 1.37622 0.95227 0.87620 1.26973 1.03376 0.92857 0.95390 1.69854 1.38157 1.31036 1.02165 0.85133 0.76256 0.79046 0.79162 1.18185 1.19653 1.17381 1.20438 0.88680 1.07827 1.05067 1.22747 0.97090 1.00871 0.98363 1.83594 0.94843 1.55831 1.32454 0.82243 0.85217 0.92751 0.92256 0.75398 0.89121 0.87358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -18.01 18.54 19.00 0.35 -17.66 15 2 C 0.32 11.64 15.77 88.33 1.39 13.03 15 3 C -0.23 -8.54 6.23 22.85 0.14 -8.40 15 4 C 0.02 0.84 10.05 21.98 0.22 1.06 15 5 C -0.24 -9.80 5.87 -21.33 -0.13 -9.93 15 6 C -0.02 -0.79 9.35 22.54 0.21 -0.58 15 7 C -0.19 -7.70 5.87 -19.83 -0.12 -7.82 15 8 C 0.15 4.73 6.22 71.24 0.44 5.18 15 9 O -0.59 -16.40 12.06 -148.98 -1.80 -18.20 15 10 C 0.12 5.34 5.55 -21.35 -0.12 5.23 15 11 C -0.44 -18.87 8.46 23.35 0.20 -18.67 15 12 H 0.11 4.07 6.99 -2.91 -0.02 4.05 15 13 C 0.03 1.44 5.14 85.28 0.44 1.88 15 14 N -0.79 -35.54 10.99 21.84 0.24 -35.30 15 15 Si 0.98 31.10 29.59 68.60 2.03 33.13 15 16 H -0.26 -7.79 7.11 99.48 0.71 -7.09 15 17 H -0.27 -8.55 7.11 99.48 0.71 -7.85 15 18 H -0.25 -7.64 7.11 99.48 0.71 -6.94 15 19 C -0.19 -9.21 8.71 22.96 0.20 -9.01 15 20 C -0.07 -3.34 6.45 23.01 0.15 -3.19 15 21 S 0.07 2.80 23.22 -56.49 -1.31 1.49 15 22 H 0.16 4.69 8.06 -2.91 -0.02 4.66 15 23 H 0.13 4.71 6.88 -2.91 -0.02 4.69 15 24 H 0.05 1.73 8.14 -2.38 -0.02 1.71 15 25 H 0.06 1.77 7.78 -2.39 -0.02 1.75 15 26 H 0.40 6.49 9.12 -74.05 -0.68 5.81 15 27 H 0.30 12.08 8.30 -92.71 -0.77 11.31 15 28 H 0.11 5.44 6.20 -2.91 -0.02 5.42 15 Total: -1.00 -53.32 270.87 3.10 -50.22 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 0.56 Total: 17.54 kcal Atomic # 6 Polarization: -34.25 SS G_CDS: 3.03 Total: -31.22 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: 0.59 Total: -52.96 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -1.80 Total: -18.20 kcal Atomic # 14 Polarization: 31.10 SS G_CDS: 2.03 Total: 33.13 kcal Atomic # 16 Polarization: 2.80 SS G_CDS: -1.31 Total: 1.49 kcal Total: -53.32 3.10 -50.22 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396220200.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.384 kcal (2) G-P(sol) polarization free energy of solvation -53.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds