Wall clock time and date at job start Mon Mar 30 2020 06:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35754 * 116.99656 * 2 1 4 4 C 1.36281 * 122.44857 * 270.17949 * 3 2 1 5 5 C 1.43198 * 124.83649 * 0.02794 * 4 3 2 6 6 N 3.68594 * 97.59798 * 285.60739 * 2 1 3 7 7 S 1.75469 * 110.32391 * 180.25314 * 4 3 2 8 8 C 1.76043 * 91.74379 * 359.77312 * 7 4 3 9 9 C 1.39758 * 130.25042 * 180.02562 * 8 7 4 10 10 C 1.38092 * 121.52691 * 180.02562 * 9 8 7 11 11 C 1.37624 * 121.13251 * 359.95094 * 10 9 8 12 12 C 1.40360 * 120.11989 * 0.02562 * 11 10 9 13 13 C 1.40435 * 120.39668 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99383 * 207.10546 * 13 12 11 15 15 C 1.40069 * 120.00192 * 27.10560 * 13 12 11 16 16 N 1.30780 * 120.00086 * 14.25111 * 15 13 12 17 17 Si 1.86795 * 120.00163 * 194.24911 * 15 13 12 18 18 H 1.48495 * 109.47384 * 89.99835 * 17 15 13 19 19 H 1.48502 * 109.47041 * 210.00478 * 17 15 13 20 20 H 1.48507 * 109.46846 * 330.00003 * 17 15 13 21 21 C 1.39727 * 122.43947 * 90.00966 * 3 2 1 22 22 H 1.09005 * 109.47324 * 59.99545 * 1 2 3 23 23 H 1.09000 * 109.46919 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47045 * 299.99519 * 1 2 3 25 25 H 1.08000 * 119.23324 * 359.97438 * 9 8 7 26 26 H 1.08002 * 119.42914 * 179.97438 * 10 9 8 27 27 H 1.08004 * 119.94453 * 180.02562 * 11 10 9 28 28 H 0.96993 * 120.00116 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 6 2.3740 1.8628 -1.1500 5 6 2.1188 1.3722 -2.4709 6 7 1.9164 0.9830 -3.5189 7 16 3.1602 3.3876 -0.7815 8 6 3.0175 3.1043 0.9501 9 6 3.4247 3.8918 2.0305 10 6 3.2201 3.4888 3.3354 11 6 2.6042 2.2920 3.6222 12 6 2.1713 1.4554 2.5816 13 6 1.5416 0.2332 2.8676 14 1 1.5996 -0.5822 2.1619 15 6 0.8384 0.0717 4.0682 16 7 0.5276 1.1172 4.7897 17 14 0.3444 -1.6370 4.6387 18 1 1.4241 -2.2085 5.4830 19 1 -0.9097 -1.5515 5.4295 20 1 0.1259 -2.5095 3.4570 21 6 2.3857 1.8774 1.1792 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 3.9113 4.8370 1.8405 26 1 3.5489 4.1239 4.1447 27 1 2.4535 1.9958 4.6499 28 1 0.0410 1.0054 5.6213 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396220461.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:36 Heat of formation + Delta-G solvation = 24.363236 kcal Electronic energy + Delta-G solvation = -16380.165989 eV Core-core repulsion = 13680.684469 eV Total energy + Delta-G solvation = -2699.481520 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.13232 -37.06243 -35.83883 -34.49878 -32.92144 -30.11183 -28.68429 -26.70290 -25.73712 -23.02609 -21.76006 -19.92451 -18.64343 -17.31248 -16.22155 -15.82057 -15.60698 -15.05523 -14.79339 -13.77426 -13.46924 -13.36675 -13.13154 -12.91727 -12.31741 -12.20297 -12.02528 -11.77005 -11.59732 -11.35271 -11.27360 -10.83038 -10.68828 -10.20891 -9.93955 -9.82304 -9.60784 -9.21714 -8.38451 -7.58834 -7.33715 -6.92191 -4.76551 1.12939 2.08059 2.43653 2.67615 2.80702 2.83582 2.85454 2.96000 3.53861 3.58394 3.88245 4.13082 4.53219 4.81910 5.18636 5.74425 5.85114 5.92586 6.04178 6.09723 6.21186 6.50565 6.63694 6.68189 6.76242 6.95713 7.22129 7.53014 7.60891 7.74018 8.00321 8.11370 8.17474 8.28225 8.41656 9.53375 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.020859 B = 0.008950 C = 0.006464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.017978 B = 3127.655985 C = 4330.674122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.324 6.324 3 C 0.241 3.759 4 C -0.276 4.276 5 C 0.313 3.687 6 N -0.466 5.466 7 S 0.082 5.918 8 C -0.048 4.048 9 C -0.228 4.228 10 C -0.051 4.051 11 C -0.184 4.184 12 C 0.159 3.841 13 C -0.395 4.395 14 H 0.106 0.894 15 C 0.066 3.934 16 N -0.751 5.751 17 Si 0.919 3.081 18 H -0.260 1.260 19 H -0.272 1.272 20 H -0.253 1.253 21 C -0.224 4.224 22 H 0.036 0.964 23 H 0.088 0.912 24 H 0.061 0.939 25 H 0.098 0.902 26 H 0.101 0.899 27 H 0.127 0.873 28 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.467 0.368 2.013 2.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.241 6.241 3 C 0.181 3.819 4 C -0.394 4.394 5 C 0.001 3.999 6 N -0.146 5.146 7 S 0.343 5.657 8 C -0.163 4.163 9 C -0.256 4.256 10 C -0.073 4.073 11 C -0.206 4.206 12 C 0.153 3.847 13 C -0.421 4.421 14 H 0.124 0.876 15 C -0.158 4.158 16 N -0.372 5.372 17 Si 0.742 3.258 18 H -0.185 1.185 19 H -0.197 1.197 20 H -0.177 1.177 21 C -0.229 4.229 22 H 0.054 0.946 23 H 0.106 0.894 24 H 0.080 0.920 25 H 0.116 0.884 26 H 0.119 0.881 27 H 0.144 0.856 28 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.281 0.772 -0.394 0.911 hybrid contribution -0.875 -1.350 1.577 2.253 sum -1.157 -0.578 1.183 1.752 Atomic orbital electron populations 1.22869 0.78599 1.02650 1.00875 1.85833 1.19915 1.24223 1.94131 1.17666 0.91180 0.83648 0.89397 1.19170 1.26896 1.04663 0.88720 1.24292 0.92006 0.92379 0.91225 1.81133 1.12706 1.09666 1.11098 1.83410 1.65722 1.16722 0.99801 1.22132 1.01440 0.97613 0.95147 1.19570 1.14046 1.01145 0.90813 1.20558 0.96284 0.95898 0.94543 1.21161 1.04186 0.95995 0.99250 1.18436 0.87149 0.91725 0.87392 1.20178 1.21967 0.98778 1.01208 0.87619 1.26286 0.94309 0.99798 0.95393 1.69785 1.24195 1.31810 1.11420 0.86076 0.78975 0.80684 0.80106 1.18497 1.19661 1.17665 1.18923 1.14437 0.96179 0.93375 0.94580 0.89401 0.91996 0.88389 0.88120 0.85576 0.89533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.79 10.59 101.05 1.07 1.86 15 2 O -0.32 -6.81 8.20 -18.97 -0.16 -6.96 15 3 C 0.24 5.25 5.77 -39.73 -0.23 5.02 15 4 C -0.28 -5.74 6.26 -38.36 -0.24 -5.98 15 5 C 0.31 6.51 15.55 -22.47 -0.35 6.16 15 6 N -0.47 -9.89 18.54 41.84 0.78 -9.11 15 7 S 0.08 1.56 23.22 -107.50 -2.50 -0.94 15 8 C -0.05 -1.01 6.47 -38.39 -0.25 -1.26 15 9 C -0.23 -4.60 10.02 -39.07 -0.39 -4.99 15 10 C -0.05 -1.03 9.95 -39.86 -0.40 -1.43 15 11 C -0.18 -4.07 8.64 -39.01 -0.34 -4.41 15 12 C 0.16 3.69 5.74 -104.27 -0.60 3.09 15 13 C -0.40 -8.80 7.69 -38.07 -0.29 -9.09 15 14 H 0.11 2.35 6.13 -52.49 -0.32 2.03 15 15 C 0.07 1.37 5.19 -17.31 -0.09 1.28 15 16 N -0.75 -15.85 10.91 55.55 0.61 -15.25 15 17 Si 0.92 15.55 29.58 -169.99 -5.03 10.52 15 18 H -0.26 -4.41 7.11 56.52 0.40 -4.01 15 19 H -0.27 -4.49 7.11 56.52 0.40 -4.09 15 20 H -0.25 -4.30 7.11 56.52 0.40 -3.90 15 21 C -0.22 -5.09 6.02 -104.72 -0.63 -5.72 15 22 H 0.04 0.60 8.14 -51.93 -0.42 0.18 15 23 H 0.09 1.30 8.14 -51.93 -0.42 0.87 15 24 H 0.06 1.13 7.62 -51.93 -0.40 0.73 15 25 H 0.10 1.74 8.06 -52.49 -0.42 1.32 15 26 H 0.10 1.73 8.06 -52.49 -0.42 1.30 15 27 H 0.13 2.80 6.20 -52.48 -0.33 2.48 15 28 H 0.29 5.53 8.29 -40.82 -0.34 5.19 15 LS Contribution 270.31 15.07 4.07 4.07 Total: -1.00 -24.22 270.31 -6.83 -31.04 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -1.87 Total: 2.10 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: -2.73 Total: -15.47 kcal Atomic # 7 Polarization: -25.74 SS G_CDS: 1.38 Total: -24.36 kcal Atomic # 8 Polarization: -6.81 SS G_CDS: -0.16 Total: -6.96 kcal Atomic # 14 Polarization: 15.55 SS G_CDS: -5.03 Total: 10.52 kcal Atomic # 16 Polarization: 1.56 SS G_CDS: -2.50 Total: -0.94 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -24.22 -6.83 -31.04 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396220461.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.408 kcal (2) G-P(sol) polarization free energy of solvation -24.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds