Wall clock time and date at job start Mon Mar 30 2020 06:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35754 * 116.99656 * 2 1 4 4 C 1.36281 * 122.44857 * 270.17949 * 3 2 1 5 5 C 1.43198 * 124.83649 * 0.02794 * 4 3 2 6 6 N 3.68594 * 97.59798 * 285.60739 * 2 1 3 7 7 S 1.75469 * 110.32391 * 180.25314 * 4 3 2 8 8 C 1.76043 * 91.74379 * 359.77312 * 7 4 3 9 9 C 1.39758 * 130.25042 * 180.02562 * 8 7 4 10 10 C 1.38092 * 121.52691 * 180.02562 * 9 8 7 11 11 C 1.37624 * 121.13251 * 359.95094 * 10 9 8 12 12 C 1.40360 * 120.11989 * 0.02562 * 11 10 9 13 13 C 1.40435 * 120.39668 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99383 * 207.10546 * 13 12 11 15 15 C 1.40069 * 120.00192 * 27.10560 * 13 12 11 16 16 N 1.30780 * 120.00086 * 14.25111 * 15 13 12 17 17 Si 1.86795 * 120.00163 * 194.24911 * 15 13 12 18 18 H 1.48495 * 109.47384 * 89.99835 * 17 15 13 19 19 H 1.48502 * 109.47041 * 210.00478 * 17 15 13 20 20 H 1.48507 * 109.46846 * 330.00003 * 17 15 13 21 21 C 1.39727 * 122.43947 * 90.00966 * 3 2 1 22 22 H 1.09005 * 109.47324 * 59.99545 * 1 2 3 23 23 H 1.09000 * 109.46919 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47045 * 299.99519 * 1 2 3 25 25 H 1.08000 * 119.23324 * 359.97438 * 9 8 7 26 26 H 1.08002 * 119.42914 * 179.97438 * 10 9 8 27 27 H 1.08004 * 119.94453 * 180.02562 * 11 10 9 28 28 H 0.96993 * 120.00116 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 6 2.3740 1.8628 -1.1500 5 6 2.1188 1.3722 -2.4709 6 7 1.9164 0.9830 -3.5189 7 16 3.1602 3.3876 -0.7815 8 6 3.0175 3.1043 0.9501 9 6 3.4247 3.8918 2.0305 10 6 3.2201 3.4888 3.3354 11 6 2.6042 2.2920 3.6222 12 6 2.1713 1.4554 2.5816 13 6 1.5416 0.2332 2.8676 14 1 1.5996 -0.5822 2.1619 15 6 0.8384 0.0717 4.0682 16 7 0.5276 1.1172 4.7897 17 14 0.3444 -1.6370 4.6387 18 1 1.4241 -2.2085 5.4830 19 1 -0.9097 -1.5515 5.4295 20 1 0.1259 -2.5095 3.4570 21 6 2.3857 1.8774 1.1792 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 3.9113 4.8370 1.8405 26 1 3.5489 4.1239 4.1447 27 1 2.4535 1.9958 4.6499 28 1 0.0410 1.0054 5.6213 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396220461.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:36 Heat of formation + Delta-G solvation = 13.864548 kcal Electronic energy + Delta-G solvation = -16380.621246 eV Core-core repulsion = 13680.684469 eV Total energy + Delta-G solvation = -2699.936777 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.73274 -38.65558 -37.50070 -36.09094 -34.52545 -31.73245 -30.30482 -28.17861 -27.34970 -24.64194 -23.38075 -21.54047 -20.23372 -18.94154 -17.81821 -17.39522 -17.15939 -16.59667 -16.30718 -15.35963 -15.07603 -14.85887 -14.75891 -14.45788 -13.91286 -13.82078 -13.63985 -13.30076 -13.10088 -12.90285 -12.72192 -12.27467 -12.17773 -11.75651 -11.52562 -11.39885 -11.16316 -10.79468 -10.00756 -9.21080 -8.89601 -8.49808 -6.41075 -0.50170 0.49665 0.86810 1.06929 1.22445 1.41213 1.53563 1.54812 1.92281 2.13769 2.23884 2.56137 2.94923 3.18890 3.53463 4.29886 4.35574 4.45664 4.52583 4.59165 4.76037 4.93279 5.04305 5.07756 5.14195 5.34063 5.61282 5.88810 6.01562 6.10181 6.41109 6.47148 6.53581 6.64372 6.78246 8.01814 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.020859 B = 0.008950 C = 0.006464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.017978 B = 3127.655985 C = 4330.674122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.339 6.339 3 C 0.231 3.769 4 C -0.287 4.287 5 C 0.319 3.681 6 N -0.474 5.474 7 S 0.135 5.865 8 C -0.068 4.068 9 C -0.231 4.231 10 C -0.048 4.048 11 C -0.206 4.206 12 C 0.134 3.866 13 C -0.414 4.414 14 H 0.099 0.901 15 C 0.039 3.961 16 N -0.774 5.774 17 Si 0.981 3.019 18 H -0.259 1.259 19 H -0.262 1.262 20 H -0.255 1.255 21 C -0.249 4.249 22 H 0.042 0.958 23 H 0.116 0.884 24 H 0.049 0.951 25 H 0.124 0.876 26 H 0.131 0.869 27 H 0.119 0.881 28 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.517 0.470 2.131 2.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.256 6.256 3 C 0.171 3.829 4 C -0.405 4.405 5 C 0.007 3.993 6 N -0.154 5.154 7 S 0.397 5.603 8 C -0.184 4.184 9 C -0.259 4.259 10 C -0.069 4.069 11 C -0.228 4.228 12 C 0.128 3.872 13 C -0.440 4.440 14 H 0.117 0.883 15 C -0.184 4.184 16 N -0.395 5.395 17 Si 0.800 3.200 18 H -0.183 1.183 19 H -0.186 1.186 20 H -0.178 1.178 21 C -0.254 4.254 22 H 0.060 0.940 23 H 0.134 0.866 24 H 0.068 0.932 25 H 0.142 0.858 26 H 0.149 0.851 27 H 0.137 0.863 28 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.329 0.895 -0.292 0.997 hybrid contribution -0.855 -1.323 1.512 2.184 sum -1.184 -0.429 1.220 1.753 Atomic orbital electron populations 1.23029 0.77022 1.04444 1.00527 1.85797 1.21479 1.24136 1.94169 1.17771 0.91591 0.84006 0.89512 1.19369 1.27101 1.05654 0.88406 1.24263 0.91767 0.92137 0.91105 1.81133 1.12985 1.09900 1.11369 1.83116 1.64659 1.14982 0.97532 1.22496 1.01389 0.97504 0.96983 1.19920 1.13552 1.01895 0.90498 1.20892 0.94970 0.95393 0.95669 1.21195 1.05714 0.97193 0.98742 1.18767 0.87867 0.92549 0.88052 1.20270 1.22917 0.98553 1.02228 0.88322 1.26938 0.93718 1.02896 0.94804 1.69790 1.24385 1.33417 1.11927 0.85168 0.78881 0.76403 0.79499 1.18335 1.18610 1.17793 1.19169 1.15428 0.97189 0.93625 0.93974 0.86599 0.93193 0.85766 0.85133 0.86323 0.88546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.53 10.59 113.37 1.20 2.73 15 2 O -0.34 -14.23 8.20 -90.80 -0.74 -14.97 15 3 C 0.23 10.07 5.77 22.17 0.13 10.20 15 4 C -0.29 -11.70 6.26 23.06 0.14 -11.56 15 5 C 0.32 12.94 15.55 88.33 1.37 14.32 15 6 N -0.47 -19.54 18.54 19.00 0.35 -19.19 15 7 S 0.13 4.92 23.22 -56.49 -1.31 3.61 15 8 C -0.07 -2.83 6.47 23.04 0.15 -2.68 15 9 C -0.23 -8.93 10.02 22.60 0.23 -8.71 15 10 C -0.05 -1.87 9.95 22.09 0.22 -1.65 15 11 C -0.21 -9.19 8.64 22.64 0.20 -8.99 15 12 C 0.13 6.29 5.74 -19.64 -0.11 6.18 15 13 C -0.41 -18.71 7.69 23.25 0.18 -18.53 15 14 H 0.10 4.47 6.13 -2.91 -0.02 4.45 15 15 C 0.04 1.59 5.19 85.29 0.44 2.03 15 16 N -0.77 -32.67 10.91 21.85 0.24 -32.43 15 17 Si 0.98 31.27 29.58 68.60 2.03 33.30 15 18 H -0.26 -8.15 7.11 99.48 0.71 -7.44 15 19 H -0.26 -7.87 7.11 99.48 0.71 -7.16 15 20 H -0.25 -8.08 7.11 99.48 0.71 -7.38 15 21 C -0.25 -11.37 6.02 -19.93 -0.12 -11.49 15 22 H 0.04 1.38 8.14 -2.38 -0.02 1.36 15 23 H 0.12 3.27 8.14 -2.39 -0.02 3.25 15 24 H 0.05 1.83 7.62 -2.39 -0.02 1.81 15 25 H 0.12 4.06 8.06 -2.91 -0.02 4.04 15 26 H 0.13 4.19 8.06 -2.91 -0.02 4.17 15 27 H 0.12 5.35 6.20 -2.91 -0.02 5.33 15 28 H 0.30 11.29 8.29 -92.71 -0.77 10.52 15 Total: -1.00 -50.67 270.31 5.80 -44.86 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: 1.21 Total: 12.96 kcal Atomic # 6 Polarization: -32.17 SS G_CDS: 4.03 Total: -28.14 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: 0.59 Total: -51.62 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: -0.74 Total: -14.97 kcal Atomic # 14 Polarization: 31.27 SS G_CDS: 2.03 Total: 33.30 kcal Atomic # 16 Polarization: 4.92 SS G_CDS: -1.31 Total: 3.61 kcal Total: -50.67 5.80 -44.86 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396220461.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.729 kcal (2) G-P(sol) polarization free energy of solvation -50.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds