Wall clock time and date at job start Mon Mar 30 2020 06:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35512 * 117.00317 * 2 1 4 4 C 1.39896 * 120.10836 * 92.17128 * 3 2 1 5 5 C 1.43205 * 119.68326 * 359.74369 * 4 3 2 6 6 N 3.51378 * 97.42662 * 79.63233 * 2 1 3 7 7 C 1.39365 * 120.62484 * 179.72342 * 4 3 2 8 8 C 1.39376 * 121.46494 * 359.97438 * 7 4 3 9 9 S 1.76132 * 130.33651 * 180.02562 * 8 7 4 10 10 C 1.75493 * 91.51017 * 179.97438 * 9 8 7 11 11 C 1.32748 * 110.67073 * 0.02562 * 10 9 8 12 12 C 1.39800 * 120.35648 * 0.02562 * 8 7 4 13 13 C 1.40658 * 120.09971 * 271.89414 * 3 2 1 14 14 C 1.40459 * 120.32738 * 0.25303 * 13 3 2 15 15 H 1.07999 * 119.99933 * 318.60673 * 14 13 3 16 16 C 1.39963 * 120.00258 * 138.59901 * 14 13 3 17 17 N 1.30900 * 120.00008 * 340.53217 * 16 14 13 18 18 Si 1.86799 * 119.99909 * 160.53413 * 16 14 13 19 19 H 1.48495 * 109.47378 * 90.00114 * 18 16 14 20 20 H 1.48510 * 109.46890 * 210.00017 * 18 16 14 21 21 H 1.48498 * 109.47398 * 329.99876 * 18 16 14 22 22 H 1.08999 * 109.46724 * 59.99769 * 1 2 3 23 23 H 1.08994 * 109.47260 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.46533 * 300.00419 * 1 2 3 25 25 H 1.08007 * 119.26367 * 180.02562 * 7 4 3 26 26 H 1.07998 * 124.66704 * 180.02562 * 10 9 8 27 27 H 1.08003 * 122.07409 * 180.02562 * 11 10 9 28 28 H 0.96999 * 119.99545 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0443 1.2074 0.0000 4 6 2.4038 1.8118 1.2093 5 6 2.1135 1.1511 2.4462 6 7 1.8832 0.6271 3.4274 7 6 3.0421 3.0506 1.2217 8 6 3.3432 3.7257 0.0401 9 16 4.1334 5.2789 -0.2160 10 6 3.9836 5.1205 -1.9573 11 6 3.3828 3.9799 -2.2741 12 6 3.0069 3.1686 -1.1973 13 6 2.3288 1.8541 -1.2162 14 6 1.9733 1.2573 -2.4370 15 1 2.1180 0.1969 -2.5820 16 6 1.4314 2.0367 -3.4655 17 7 0.9041 3.2036 -3.1941 18 14 1.4607 1.4116 -5.2256 19 1 0.2228 0.6376 -5.4967 20 1 1.5384 2.5641 -6.1590 21 1 2.6444 0.5363 -5.4204 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5140 0.8900 25 1 3.3102 3.4970 2.1679 26 1 4.3321 5.8505 -2.6728 27 1 3.1964 3.6953 -3.2992 28 1 0.5289 3.7439 -3.9070 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396220694.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:44 Heat of formation + Delta-G solvation = 19.016770 kcal Electronic energy + Delta-G solvation = -16498.987663 eV Core-core repulsion = 13799.274303 eV Total energy + Delta-G solvation = -2699.713360 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.60886 -38.52048 -37.62927 -35.66212 -35.07354 -31.75244 -30.19137 -27.98776 -26.81623 -24.79171 -23.28455 -21.42067 -20.54995 -18.22963 -17.92779 -17.54899 -17.33110 -16.56984 -16.22175 -15.24954 -15.00187 -14.72102 -14.57677 -14.40758 -14.04117 -13.87851 -13.62541 -13.35130 -13.10853 -12.96600 -12.74464 -12.45684 -12.16427 -11.91288 -11.52272 -11.39968 -11.00188 -10.54371 -9.97110 -9.06079 -8.85818 -8.31172 -6.42160 -0.33610 0.62386 0.88479 1.25389 1.31589 1.44188 1.49262 1.56944 1.69678 2.20140 2.29385 2.63504 3.02176 3.06802 3.53153 4.25186 4.34589 4.50209 4.63096 4.73086 4.79122 4.85686 4.99180 5.10928 5.19980 5.23874 5.50980 5.66403 5.78482 5.95326 6.24868 6.48019 6.53236 6.72984 7.04753 8.20121 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.015338 B = 0.011363 C = 0.006836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.053505 B = 2463.626519 C = 4094.763623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.335 6.335 3 C -0.018 4.018 4 C -0.001 4.001 5 C 0.291 3.709 6 N -0.466 5.466 7 C -0.146 4.146 8 C -0.125 4.125 9 S 0.077 5.923 10 C -0.236 4.236 11 C -0.070 4.070 12 C -0.113 4.113 13 C 0.127 3.873 14 C -0.461 4.461 15 H 0.087 0.913 16 C 0.053 3.947 17 N -0.791 5.791 18 Si 0.966 3.034 19 H -0.264 1.264 20 H -0.261 1.261 21 H -0.259 1.259 22 H 0.038 0.962 23 H 0.104 0.896 24 H 0.027 0.973 25 H 0.132 0.868 26 H 0.183 0.817 27 H 0.125 0.875 28 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.919 3.551 -3.120 5.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.252 6.252 3 C -0.068 4.068 4 C -0.008 4.008 5 C -0.023 4.023 6 N -0.143 5.143 7 C -0.173 4.173 8 C -0.240 4.240 9 S 0.339 5.661 10 C -0.370 4.370 11 C -0.099 4.099 12 C -0.122 4.122 13 C 0.121 3.879 14 C -0.489 4.489 15 H 0.105 0.895 16 C -0.167 4.167 17 N -0.414 5.414 18 Si 0.787 3.213 19 H -0.189 1.189 20 H -0.185 1.185 21 H -0.182 1.182 22 H 0.057 0.943 23 H 0.123 0.877 24 H 0.046 0.954 25 H 0.150 0.850 26 H 0.200 0.800 27 H 0.143 0.857 28 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.142 3.956 -0.828 4.574 hybrid contribution -0.989 -0.945 -1.973 2.401 sum 1.153 3.011 -2.801 4.271 Atomic orbital electron populations 1.22923 0.80418 1.02859 0.99462 1.85892 1.19757 1.25400 1.94137 1.18293 1.06756 0.91395 0.90320 1.15937 1.04788 0.94580 0.85463 1.25827 0.92185 0.92009 0.92243 1.81058 1.10758 1.10211 1.12228 1.19567 1.07519 0.93936 0.96235 1.22463 1.05386 0.99493 0.96645 1.83312 1.62924 1.17411 1.02480 1.25282 1.10891 1.02733 0.98076 1.19790 0.97039 0.93614 0.99504 1.19455 1.02722 0.98516 0.91505 1.18689 0.88195 0.88670 0.92295 1.19465 1.35854 0.96868 0.96682 0.89475 1.26538 0.91923 0.93930 1.04276 1.69876 1.23453 1.10830 1.37254 0.85417 0.80038 0.79459 0.76390 1.18920 1.18547 1.18227 0.94274 0.87737 0.95417 0.84999 0.79975 0.85724 0.89205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.44 11.10 113.37 1.26 2.70 15 2 O -0.34 -15.03 9.25 -88.14 -0.82 -15.85 15 3 C -0.02 -0.83 5.73 23.26 0.13 -0.69 15 4 C 0.00 -0.05 5.73 -21.36 -0.12 -0.17 15 5 C 0.29 12.07 14.79 88.33 1.31 13.37 15 6 N -0.47 -19.48 18.54 19.00 0.35 -19.13 15 7 C -0.15 -5.84 9.69 22.82 0.22 -5.62 15 8 C -0.12 -5.13 6.47 22.92 0.15 -4.98 15 9 S 0.08 2.56 23.30 -56.49 -1.32 1.25 15 10 C -0.24 -8.05 11.11 66.64 0.74 -7.31 15 11 C -0.07 -2.86 8.30 21.51 0.18 -2.68 15 12 C -0.11 -5.09 5.51 -19.91 -0.11 -5.20 15 13 C 0.13 6.08 5.47 -19.58 -0.11 5.98 15 14 C -0.46 -21.67 8.36 23.23 0.19 -21.47 15 15 H 0.09 4.12 7.92 -2.91 -0.02 4.10 15 16 C 0.05 2.29 3.84 85.25 0.33 2.62 15 17 N -0.79 -35.09 11.02 21.84 0.24 -34.85 15 18 Si 0.97 32.95 29.60 68.60 2.03 34.98 15 19 H -0.26 -8.91 7.11 99.48 0.71 -8.20 15 20 H -0.26 -8.39 7.11 99.48 0.71 -7.68 15 21 H -0.26 -8.88 7.11 99.48 0.71 -8.17 15 22 H 0.04 1.56 8.14 -2.39 -0.02 1.54 15 23 H 0.10 3.25 8.14 -2.39 -0.02 3.23 15 24 H 0.03 1.02 8.14 -2.38 -0.02 1.00 15 25 H 0.13 4.56 8.06 -2.91 -0.02 4.54 15 26 H 0.18 4.87 8.06 -2.91 -0.02 4.85 15 27 H 0.13 5.15 6.19 -2.91 -0.02 5.13 15 28 H 0.30 11.87 8.30 -92.71 -0.77 11.10 15 Total: -1.00 -51.48 272.09 5.87 -45.62 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: 1.21 Total: 11.43 kcal Atomic # 6 Polarization: -27.62 SS G_CDS: 4.17 Total: -23.45 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: 0.59 Total: -53.98 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -0.82 Total: -15.85 kcal Atomic # 14 Polarization: 32.95 SS G_CDS: 2.03 Total: 34.98 kcal Atomic # 16 Polarization: 2.56 SS G_CDS: -1.32 Total: 1.25 kcal Total: -51.48 5.87 -45.62 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396220694.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.634 kcal (2) G-P(sol) polarization free energy of solvation -51.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds