Wall clock time and date at job start Mon Mar 30 2020 06:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43210 * 179.97438 * 2 1 4 4 C 1.38566 * 120.48354 * 241.88085 * 3 2 1 5 5 C 1.39874 * 120.71958 * 180.27644 * 4 3 2 6 6 S 1.76145 * 129.63883 * 179.97438 * 5 4 3 7 7 C 1.75218 * 92.26052 * 180.02562 * 6 5 4 8 8 C 1.31789 * 111.53266 * 0.02562 * 7 6 5 9 9 C 1.40363 * 120.80489 * 359.97438 * 5 4 3 10 10 C 1.40539 * 119.89798 * 0.02562 * 9 5 4 11 11 C 1.50703 * 119.77545 * 180.02562 * 10 9 5 12 12 O 1.42899 * 109.46911 * 269.97872 * 11 10 9 13 13 C 1.39832 * 120.45368 * 0.02562 * 10 9 5 14 14 C 1.40738 * 120.45319 * 180.02562 * 13 10 9 15 15 H 1.07999 * 120.00130 * 317.80055 * 14 13 10 16 16 C 1.40125 * 119.99765 * 137.80138 * 14 13 10 17 17 N 1.30744 * 120.00492 * 338.49309 * 16 14 13 18 18 Si 1.86808 * 119.99548 * 158.49056 * 16 14 13 19 19 H 1.48496 * 109.47139 * 60.00436 * 18 16 14 20 20 H 1.48501 * 109.46658 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47100 * 299.99849 * 18 16 14 22 22 H 1.08000 * 119.64408 * 0.27090 * 4 3 2 23 23 H 1.08002 * 124.22942 * 179.97438 * 7 6 5 24 24 H 1.07999 * 122.52215 * 180.02562 * 8 7 6 25 25 H 1.08999 * 109.46994 * 29.97992 * 11 10 9 26 26 H 1.09005 * 109.47036 * 149.98180 * 11 10 9 27 27 H 0.96701 * 113.99737 * 179.97438 * 12 11 10 28 28 H 0.96995 * 120.00319 * 185.41365 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2707 0.5638 1.0532 5 6 4.6694 0.5722 1.0555 6 16 5.7873 1.2159 2.2551 7 6 7.1842 0.7256 1.3179 8 6 6.8298 0.1288 0.1975 9 6 5.3935 0.0105 -0.0077 10 6 4.7110 -0.5686 -1.0912 11 6 5.4912 -1.1714 -2.2310 12 8 5.7322 -0.1725 -3.2241 13 6 3.3132 -0.5894 -1.1190 14 6 2.6298 -1.1698 -2.2038 15 1 2.9709 -0.9941 -3.2133 16 6 1.5068 -1.9758 -1.9741 17 7 1.3309 -2.5342 -0.8050 18 14 0.2608 -2.2523 -3.3382 19 1 0.9309 -2.8930 -4.4982 20 1 -0.8255 -3.1362 -2.8445 21 1 -0.3130 -0.9480 -3.7563 22 1 2.7326 1.0010 1.8812 23 1 8.2075 0.8924 1.6202 24 1 7.5508 -0.2457 -0.5140 25 1 6.4428 -1.5513 -1.8592 26 1 4.9198 -1.9895 -2.6698 27 1 6.2312 -0.4906 -3.9889 28 1 0.5974 -3.1540 -0.6691 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396220814.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:31 Heat of formation + Delta-G solvation = 9.324446 kcal Electronic energy + Delta-G solvation = -16365.256654 eV Core-core repulsion = 13665.123004 eV Total energy + Delta-G solvation = -2700.133651 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.59139 -35.96987 -35.74902 -34.19802 -33.18226 -30.89046 -28.95265 -26.25021 -24.64705 -23.05377 -21.09343 -20.07074 -17.66660 -16.94255 -16.66661 -16.19486 -15.56791 -15.07433 -14.05498 -13.51312 -13.24238 -13.04946 -12.93584 -12.69476 -12.42483 -12.12257 -11.72294 -11.57620 -11.34938 -11.24923 -11.22254 -10.91685 -10.46468 -10.33257 -9.92521 -9.60837 -9.29605 -9.22872 -8.52620 -7.44405 -7.15241 -6.91177 -4.73503 1.37861 2.33287 2.36422 2.77351 2.79205 2.98286 3.01201 3.08001 3.76171 3.95345 4.02451 4.52203 5.01382 5.23555 5.35903 5.45561 5.64708 5.90302 5.98155 6.19049 6.30826 6.35251 6.45890 6.70388 6.89116 6.90969 7.11665 7.23158 7.51854 7.68360 8.08836 8.30486 8.37611 8.51315 8.82221 9.86325 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.024130 B = 0.008203 C = 0.006470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.124587 B = 3412.446202 C = 4326.453889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C 0.316 3.684 3 C -0.077 4.077 4 C -0.005 4.005 5 C -0.231 4.231 6 S 0.015 5.985 7 C -0.193 4.193 8 C -0.119 4.119 9 C 0.002 3.998 10 C -0.170 4.170 11 C 0.141 3.859 12 O -0.570 6.570 13 C 0.180 3.820 14 C -0.461 4.461 15 H 0.099 0.901 16 C 0.083 3.917 17 N -0.769 5.769 18 Si 0.905 3.095 19 H -0.262 1.262 20 H -0.275 1.275 21 H -0.259 1.259 22 H 0.109 0.891 23 H 0.154 0.846 24 H 0.132 0.868 25 H 0.031 0.969 26 H 0.059 0.941 27 H 0.361 0.639 28 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.645 0.976 -0.116 8.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.165 5.165 2 C 0.004 3.996 3 C -0.083 4.083 4 C -0.031 4.031 5 C -0.345 4.345 6 S 0.275 5.725 7 C -0.326 4.326 8 C -0.150 4.150 9 C -0.005 4.005 10 C -0.175 4.175 11 C 0.064 3.936 12 O -0.374 6.374 13 C 0.173 3.827 14 C -0.489 4.489 15 H 0.117 0.883 16 C -0.140 4.140 17 N -0.391 5.391 18 Si 0.729 3.271 19 H -0.186 1.186 20 H -0.200 1.200 21 H -0.183 1.183 22 H 0.127 0.873 23 H 0.171 0.829 24 H 0.150 0.850 25 H 0.049 0.951 26 H 0.077 0.923 27 H 0.206 0.794 28 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.238 1.955 1.879 6.802 hybrid contribution 0.396 -1.399 -2.120 2.571 sum 6.634 0.556 -0.241 6.662 Atomic orbital electron populations 1.80933 1.12645 1.12584 1.10332 1.25183 0.92330 0.90584 0.91488 1.16945 0.84070 1.07699 0.99634 1.19960 0.90728 0.96435 0.95933 1.21569 0.95996 1.16259 1.00686 1.83521 0.96391 1.66689 1.25940 1.24747 1.01609 1.06692 0.99573 1.21035 0.94821 1.01601 0.97591 1.18941 0.90917 0.96404 0.94269 1.19250 0.92258 1.10509 0.95441 1.20631 0.95968 0.89851 0.87119 1.86667 1.78287 1.39608 1.32845 1.17889 0.89396 0.86285 0.89093 1.19472 1.08392 1.26061 0.94985 0.88322 1.25960 0.96977 0.94426 0.96650 1.69627 1.27562 1.18438 1.23501 0.86356 0.79878 0.79795 0.81071 1.18594 1.20023 1.18278 0.87341 0.82881 0.84984 0.95084 0.92327 0.79404 0.89780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.20 18.51 41.84 0.77 -11.43 15 2 C 0.32 7.76 11.71 -22.47 -0.26 7.50 15 3 C -0.08 -1.83 5.58 -104.38 -0.58 -2.41 15 4 C -0.01 -0.12 9.75 -38.85 -0.38 -0.50 15 5 C -0.23 -4.77 6.46 -38.17 -0.25 -5.02 15 6 S 0.02 0.26 23.23 -107.50 -2.50 -2.24 15 7 C -0.19 -3.00 11.00 28.84 0.32 -2.69 15 8 C -0.12 -2.06 9.75 -38.55 -0.38 -2.43 15 9 C 0.00 0.03 5.96 -105.31 -0.63 -0.60 15 10 C -0.17 -3.75 5.63 -103.16 -0.58 -4.33 15 11 C 0.14 2.64 6.45 36.01 0.23 2.87 15 12 O -0.57 -10.16 13.64 -35.23 -0.48 -10.64 15 13 C 0.18 4.32 5.41 -104.89 -0.57 3.75 15 14 C -0.46 -11.11 7.34 -37.93 -0.28 -11.39 15 15 H 0.10 2.31 7.62 -52.49 -0.40 1.91 15 16 C 0.08 1.97 4.07 -17.31 -0.07 1.90 15 17 N -0.77 -19.05 11.24 55.56 0.62 -18.42 15 18 Si 0.91 18.82 29.62 -169.99 -5.03 13.78 15 19 H -0.26 -5.12 7.11 56.52 0.40 -4.71 15 20 H -0.28 -5.70 7.11 56.52 0.40 -5.30 15 21 H -0.26 -5.56 7.11 56.52 0.40 -5.15 15 22 H 0.11 2.07 8.06 -52.49 -0.42 1.65 15 23 H 0.15 1.85 8.06 -52.49 -0.42 1.42 15 24 H 0.13 1.99 7.44 -52.49 -0.39 1.60 15 25 H 0.03 0.51 7.15 -51.93 -0.37 0.14 15 26 H 0.06 1.11 7.02 -51.93 -0.36 0.75 15 27 H 0.36 4.37 9.12 45.56 0.42 4.79 15 28 H 0.29 6.84 8.30 -40.82 -0.34 6.50 15 LS Contribution 269.44 15.07 4.06 4.06 Total: -1.00 -27.57 269.44 -7.07 -34.63 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -1.09 Total: 3.58 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: -3.42 Total: -13.32 kcal Atomic # 7 Polarization: -31.25 SS G_CDS: 1.40 Total: -29.85 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: -0.48 Total: -10.64 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.78 kcal Atomic # 16 Polarization: 0.26 SS G_CDS: -2.50 Total: -2.24 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -27.57 -7.07 -34.63 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396220814.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.959 kcal (2) G-P(sol) polarization free energy of solvation -27.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds