Wall clock time and date at job start Mon Mar 30 2020 06:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43210 * 179.97438 * 2 1 4 4 C 1.38566 * 120.48354 * 241.88085 * 3 2 1 5 5 C 1.39874 * 120.71958 * 180.27644 * 4 3 2 6 6 S 1.76145 * 129.63883 * 179.97438 * 5 4 3 7 7 C 1.75218 * 92.26052 * 180.02562 * 6 5 4 8 8 C 1.31789 * 111.53266 * 0.02562 * 7 6 5 9 9 C 1.40363 * 120.80489 * 359.97438 * 5 4 3 10 10 C 1.40539 * 119.89798 * 0.02562 * 9 5 4 11 11 C 1.50703 * 119.77545 * 180.02562 * 10 9 5 12 12 O 1.42899 * 109.46911 * 269.97872 * 11 10 9 13 13 C 1.39832 * 120.45368 * 0.02562 * 10 9 5 14 14 C 1.40738 * 120.45319 * 180.02562 * 13 10 9 15 15 H 1.07999 * 120.00130 * 317.80055 * 14 13 10 16 16 C 1.40125 * 119.99765 * 137.80138 * 14 13 10 17 17 N 1.30744 * 120.00492 * 338.49309 * 16 14 13 18 18 Si 1.86808 * 119.99548 * 158.49056 * 16 14 13 19 19 H 1.48496 * 109.47139 * 60.00436 * 18 16 14 20 20 H 1.48501 * 109.46658 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47100 * 299.99849 * 18 16 14 22 22 H 1.08000 * 119.64408 * 0.27090 * 4 3 2 23 23 H 1.08002 * 124.22942 * 179.97438 * 7 6 5 24 24 H 1.07999 * 122.52215 * 180.02562 * 8 7 6 25 25 H 1.08999 * 109.46994 * 29.97992 * 11 10 9 26 26 H 1.09005 * 109.47036 * 149.98180 * 11 10 9 27 27 H 0.96701 * 113.99737 * 179.97438 * 12 11 10 28 28 H 0.96995 * 120.00319 * 185.41365 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2707 0.5638 1.0532 5 6 4.6694 0.5722 1.0555 6 16 5.7873 1.2159 2.2551 7 6 7.1842 0.7256 1.3179 8 6 6.8298 0.1288 0.1975 9 6 5.3935 0.0105 -0.0077 10 6 4.7110 -0.5686 -1.0912 11 6 5.4912 -1.1714 -2.2310 12 8 5.7322 -0.1725 -3.2241 13 6 3.3132 -0.5894 -1.1190 14 6 2.6298 -1.1698 -2.2038 15 1 2.9709 -0.9941 -3.2133 16 6 1.5068 -1.9758 -1.9741 17 7 1.3309 -2.5342 -0.8050 18 14 0.2608 -2.2523 -3.3382 19 1 0.9309 -2.8930 -4.4982 20 1 -0.8255 -3.1362 -2.8445 21 1 -0.3130 -0.9480 -3.7563 22 1 2.7326 1.0010 1.8812 23 1 8.2075 0.8924 1.6202 24 1 7.5508 -0.2457 -0.5140 25 1 6.4428 -1.5513 -1.8592 26 1 4.9198 -1.9895 -2.6698 27 1 6.2312 -0.4906 -3.9889 28 1 0.5974 -3.1540 -0.6691 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396220814.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:30 Heat of formation + Delta-G solvation = -7.722944 kcal Electronic energy + Delta-G solvation = -16365.995885 eV Core-core repulsion = 13665.123004 eV Total energy + Delta-G solvation = -2700.872881 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.18557 -37.64684 -37.21948 -35.94303 -34.80794 -32.52489 -30.53941 -27.92606 -26.20569 -24.63854 -22.67487 -21.58148 -19.37559 -18.59218 -18.04895 -17.66906 -17.23086 -16.65484 -15.68433 -14.94718 -14.77257 -14.63899 -14.59608 -14.32514 -14.00542 -13.81399 -13.41607 -13.31448 -12.97352 -12.90740 -12.76040 -12.60150 -12.07392 -11.78137 -11.46498 -11.18109 -11.02813 -10.62161 -10.09153 -9.07558 -8.88886 -8.43004 -6.50524 -0.18143 0.67830 0.92906 1.21372 1.30744 1.33975 1.37386 1.45803 2.05724 2.07551 2.35453 2.70688 3.32810 3.54307 3.94173 4.04751 4.17865 4.48792 4.58755 4.69981 4.85282 4.87668 5.02997 5.10705 5.27111 5.30631 5.44337 5.68308 5.86917 6.03270 6.31361 6.64073 6.74018 6.94981 7.19146 8.11570 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.024130 B = 0.008203 C = 0.006470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.124587 B = 3412.446202 C = 4326.453889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C 0.322 3.678 3 C -0.110 4.110 4 C -0.006 4.006 5 C -0.251 4.251 6 S 0.048 5.952 7 C -0.168 4.168 8 C -0.139 4.139 9 C -0.009 4.009 10 C -0.186 4.186 11 C 0.148 3.852 12 O -0.585 6.585 13 C 0.157 3.843 14 C -0.483 4.483 15 H 0.097 0.903 16 C 0.056 3.944 17 N -0.802 5.802 18 Si 0.948 3.052 19 H -0.239 1.239 20 H -0.276 1.276 21 H -0.272 1.272 22 H 0.124 0.876 23 H 0.199 0.801 24 H 0.158 0.842 25 H 0.059 0.941 26 H 0.048 0.952 27 H 0.387 0.613 28 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.415 1.464 0.224 11.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.190 5.190 2 C 0.010 3.990 3 C -0.117 4.117 4 C -0.031 4.031 5 C -0.365 4.365 6 S 0.308 5.692 7 C -0.301 4.301 8 C -0.170 4.170 9 C -0.017 4.017 10 C -0.190 4.190 11 C 0.071 3.929 12 O -0.393 6.393 13 C 0.151 3.849 14 C -0.512 4.512 15 H 0.114 0.886 16 C -0.163 4.163 17 N -0.426 5.426 18 Si 0.770 3.230 19 H -0.162 1.162 20 H -0.201 1.201 21 H -0.197 1.197 22 H 0.142 0.858 23 H 0.216 0.784 24 H 0.176 0.824 25 H 0.077 0.923 26 H 0.066 0.934 27 H 0.235 0.765 28 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 9.035 2.439 2.198 9.613 hybrid contribution -0.209 -1.412 -2.091 2.532 sum 8.827 1.027 0.106 8.887 Atomic orbital electron populations 1.80891 1.13156 1.13764 1.11203 1.25490 0.92701 0.89896 0.90870 1.17174 0.83715 1.09741 1.01028 1.20168 0.91570 0.95678 0.95686 1.22051 0.96378 1.15862 1.02209 1.83473 0.95677 1.65712 1.24379 1.25306 1.03110 1.03757 0.97970 1.21166 0.93205 1.03337 0.99272 1.19418 0.93120 0.95522 0.93641 1.19701 0.92016 1.10218 0.97062 1.20519 0.96613 0.89227 0.86533 1.86582 1.79038 1.39769 1.33932 1.18214 0.90673 0.86633 0.89403 1.19541 1.09466 1.27211 0.95014 0.88565 1.26464 0.97826 0.94024 0.98010 1.69678 1.28293 1.19744 1.24924 0.85711 0.78303 0.79006 0.80010 1.16208 1.20093 1.19731 0.85772 0.78390 0.82439 0.92325 0.93378 0.76451 0.89997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -26.44 18.51 19.01 0.35 -26.09 15 2 C 0.32 16.31 11.71 88.34 1.03 17.34 15 3 C -0.11 -5.34 5.58 -19.71 -0.11 -5.45 15 4 C -0.01 -0.26 9.75 22.74 0.22 -0.04 15 5 C -0.25 -9.97 6.46 23.18 0.15 -9.82 15 6 S 0.05 1.46 23.23 -56.49 -1.31 0.15 15 7 C -0.17 -4.39 11.00 67.06 0.74 -3.65 15 8 C -0.14 -4.26 9.75 23.41 0.23 -4.03 15 9 C -0.01 -0.38 5.96 -20.31 -0.12 -0.50 15 10 C -0.19 -8.10 5.63 -18.92 -0.11 -8.20 15 11 C 0.15 5.34 6.45 71.24 0.46 5.80 15 12 O -0.59 -19.84 13.64 -148.98 -2.03 -21.87 15 13 C 0.16 7.70 5.41 -20.04 -0.11 7.59 15 14 C -0.48 -23.93 7.34 23.34 0.17 -23.76 15 15 H 0.10 4.63 7.62 -2.91 -0.02 4.61 15 16 C 0.06 2.74 4.07 85.31 0.35 3.09 15 17 N -0.80 -41.11 11.24 21.86 0.25 -40.86 15 18 Si 0.95 39.23 29.62 68.60 2.03 41.26 15 19 H -0.24 -8.91 7.11 99.48 0.71 -8.21 15 20 H -0.28 -11.32 7.11 99.48 0.71 -10.61 15 21 H -0.27 -11.75 7.11 99.48 0.71 -11.05 15 22 H 0.12 4.73 8.06 -2.91 -0.02 4.70 15 23 H 0.20 3.41 8.06 -2.91 -0.02 3.39 15 24 H 0.16 3.99 7.44 -2.91 -0.02 3.97 15 25 H 0.06 1.76 7.15 -2.39 -0.02 1.75 15 26 H 0.05 1.82 7.02 -2.38 -0.02 1.80 15 27 H 0.39 8.45 9.12 -74.06 -0.68 7.78 15 28 H 0.29 14.13 8.30 -92.71 -0.77 13.36 15 Total: -1.00 -60.32 269.44 2.74 -57.58 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: 0.55 Total: 11.48 kcal Atomic # 6 Polarization: -24.55 SS G_CDS: 2.90 Total: -21.65 kcal Atomic # 7 Polarization: -67.55 SS G_CDS: 0.60 Total: -66.95 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -2.03 Total: -21.87 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 2.03 Total: 41.26 kcal Atomic # 16 Polarization: 1.46 SS G_CDS: -1.31 Total: 0.15 kcal Total: -60.32 2.74 -57.58 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396220814.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.859 kcal (2) G-P(sol) polarization free energy of solvation -60.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds