Wall clock time and date at job start Mon Mar 30 2020 06:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 S 1.75163 * 124.63230 * 234.78922 * 3 2 1 5 5 C 1.75866 * 92.83758 * 179.83064 * 4 3 2 6 6 C 1.39333 * 110.80400 * 0.33548 * 5 4 3 7 7 C 1.40813 * 119.07244 * 179.82066 * 6 5 4 8 8 C 1.37370 * 120.46418 * 359.72593 * 7 6 5 9 9 C 1.38651 * 120.25362 * 0.02562 * 8 7 6 10 10 C 1.37552 * 120.12754 * 359.97438 * 9 8 7 11 11 C 1.50701 * 119.75550 * 179.97438 * 10 9 8 12 12 O 1.42896 * 109.47034 * 0.02562 * 11 10 9 13 13 C 1.38645 * 124.63221 * 54.80776 * 3 2 1 14 14 C 1.39668 * 123.34564 * 0.02562 * 13 3 2 15 15 H 1.08001 * 120.00091 * 318.42692 * 14 13 3 16 16 C 1.40438 * 120.00034 * 138.43583 * 14 13 3 17 17 N 1.30611 * 120.00095 * 156.13842 * 16 14 13 18 18 Si 1.86804 * 119.99827 * 336.13596 * 16 14 13 19 19 H 1.48493 * 109.46976 * 95.36793 * 18 16 14 20 20 H 1.48502 * 109.47032 * 215.36590 * 18 16 14 21 21 H 1.48495 * 109.46961 * 335.36365 * 18 16 14 22 22 H 1.08002 * 119.76867 * 179.70559 * 7 6 5 23 23 H 1.07998 * 119.87501 * 180.02562 * 8 7 6 24 24 H 1.07993 * 119.93317 * 179.97438 * 9 8 7 25 25 H 1.08999 * 109.47490 * 240.00128 * 11 10 9 26 26 H 1.09002 * 109.46680 * 120.00490 * 11 10 9 27 27 H 0.96700 * 113.99939 * 179.97438 * 12 11 10 28 28 H 0.97001 * 120.00046 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 16 3.5632 0.8321 1.1776 5 6 5.0582 0.2943 0.4235 6 6 4.7929 -0.4896 -0.6975 7 6 5.8708 -1.0110 -1.4385 8 6 7.1658 -0.7457 -1.0647 9 6 7.4248 0.0391 0.0485 10 6 6.3850 0.5573 0.7850 11 6 6.6761 1.4089 1.9938 12 8 8.0900 1.5291 2.1624 13 6 3.3563 -0.6565 -0.9323 14 6 2.8329 -1.4025 -1.9907 15 1 1.9818 -2.0472 -1.8281 16 6 3.4135 -1.3145 -3.2664 17 7 3.2704 -2.2943 -4.1181 18 14 4.3903 0.2041 -3.7453 19 1 5.8348 -0.0394 -3.5020 20 1 4.1735 0.4986 -5.1846 21 1 3.9390 1.3603 -2.9301 22 1 5.6781 -1.6239 -2.3065 23 1 7.9854 -1.1501 -1.6402 24 1 8.4449 0.2440 0.3379 25 1 6.2426 0.9436 2.8790 26 1 6.2417 2.3988 1.8539 27 1 8.3511 2.0657 2.9233 28 1 3.6711 -2.2334 -4.9994 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396220909.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:02 Heat of formation + Delta-G solvation = 9.182417 kcal Electronic energy + Delta-G solvation = -16215.159323 eV Core-core repulsion = 13515.019514 eV Total energy + Delta-G solvation = -2700.139810 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.20033 -36.90220 -35.62033 -34.56474 -33.07163 -31.29414 -29.06485 -27.12634 -25.52849 -22.68057 -21.85867 -19.97486 -18.36523 -17.35272 -16.52955 -16.26760 -15.33679 -14.91202 -14.81315 -14.18746 -13.91261 -13.56269 -13.25888 -13.02936 -12.33151 -12.17563 -12.11451 -11.70349 -11.65055 -11.41784 -11.10929 -10.78383 -10.42208 -10.33747 -10.25739 -9.92254 -9.84312 -9.50257 -8.49025 -7.72296 -7.41722 -7.04112 -4.85776 1.29900 1.68839 2.33852 2.62804 2.91694 2.96568 3.00136 3.12147 3.68630 4.09634 4.22066 4.28370 4.30192 4.81481 5.11165 5.28437 5.36286 5.51988 5.55565 5.72704 5.88519 6.05593 6.22454 6.54436 6.57529 6.66420 6.83359 6.93919 7.36966 7.42839 7.61648 7.84827 8.04752 8.25808 8.87315 9.56324 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.018145 B = 0.010480 C = 0.007221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.764775 B = 2671.203612 C = 3876.502858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C 0.329 3.671 3 C -0.333 4.333 4 S 0.052 5.948 5 C -0.099 4.099 6 C -0.078 4.078 7 C -0.067 4.067 8 C -0.145 4.145 9 C -0.079 4.079 10 C -0.085 4.085 11 C 0.121 3.879 12 O -0.569 6.569 13 C 0.136 3.864 14 C -0.402 4.402 15 H 0.106 0.894 16 C 0.090 3.910 17 N -0.763 5.763 18 Si 0.881 3.119 19 H -0.240 1.240 20 H -0.275 1.275 21 H -0.240 1.240 22 H 0.127 0.873 23 H 0.121 0.879 24 H 0.131 0.869 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.379 0.621 28 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.636 5.002 4.976 13.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.193 5.193 2 C 0.021 3.979 3 C -0.452 4.452 4 S 0.312 5.688 5 C -0.215 4.215 6 C -0.087 4.087 7 C -0.087 4.087 8 C -0.166 4.166 9 C -0.099 4.099 10 C -0.092 4.092 11 C 0.043 3.957 12 O -0.374 6.374 13 C 0.124 3.876 14 C -0.432 4.432 15 H 0.123 0.877 16 C -0.136 4.136 17 N -0.383 5.383 18 Si 0.703 3.297 19 H -0.164 1.164 20 H -0.201 1.201 21 H -0.163 1.163 22 H 0.145 0.855 23 H 0.139 0.861 24 H 0.149 0.851 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.225 0.775 28 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 9.416 5.340 5.440 12.115 hybrid contribution 0.985 -0.145 -1.129 1.506 sum 10.401 5.195 4.311 12.400 Atomic orbital electron populations 1.81055 1.11835 1.14411 1.12011 1.24244 0.90877 0.91310 0.91513 1.18576 0.87659 1.25085 1.13927 1.82858 0.93618 1.58439 1.33861 1.22262 0.96321 1.02653 1.00254 1.19410 0.94154 0.99578 0.95526 1.21148 0.91451 0.97995 0.98101 1.20829 0.96102 1.01314 0.98390 1.20706 0.98651 0.96298 0.94282 1.18924 0.90555 1.01736 0.97968 1.20827 0.81305 0.97948 0.95573 1.86431 1.22433 1.75535 1.52996 1.17404 0.87412 0.89444 0.93320 1.19117 1.13302 1.19039 0.91764 0.87674 1.26345 0.93844 0.97225 0.96160 1.69627 1.31991 1.29387 1.07342 0.86835 0.81479 0.82562 0.78867 1.16384 1.20088 1.16277 0.85545 0.86088 0.85070 0.92288 0.92368 0.77472 0.89343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -12.89 18.54 41.84 0.78 -12.12 15 2 C 0.33 8.11 15.21 -22.47 -0.34 7.76 15 3 C -0.33 -7.80 6.31 -37.50 -0.24 -8.04 15 4 S 0.05 1.02 22.75 -107.50 -2.45 -1.43 15 5 C -0.10 -1.95 6.27 -38.51 -0.24 -2.19 15 6 C -0.08 -1.68 4.78 -105.18 -0.50 -2.18 15 7 C -0.07 -1.32 6.51 -38.92 -0.25 -1.57 15 8 C -0.14 -2.43 10.01 -39.75 -0.40 -2.82 15 9 C -0.08 -1.28 9.36 -39.68 -0.37 -1.65 15 10 C -0.09 -1.45 5.91 -104.21 -0.62 -2.07 15 11 C 0.12 1.60 7.06 36.01 0.25 1.86 15 12 O -0.57 -6.57 12.10 -35.23 -0.43 -6.99 15 13 C 0.14 3.24 4.72 -105.88 -0.50 2.74 15 14 C -0.40 -10.08 8.98 -38.22 -0.34 -10.43 15 15 H 0.11 2.86 8.06 -52.49 -0.42 2.44 15 16 C 0.09 2.11 4.48 -17.24 -0.08 2.04 15 17 N -0.76 -17.95 13.92 55.58 0.77 -17.18 15 18 Si 0.88 18.17 24.40 -169.99 -4.15 14.02 15 19 H -0.24 -4.53 5.59 56.52 0.32 -4.22 15 20 H -0.28 -5.47 7.11 56.52 0.40 -5.07 15 21 H -0.24 -5.30 7.11 56.52 0.40 -4.90 15 22 H 0.13 2.49 5.62 -52.49 -0.29 2.19 15 23 H 0.12 1.67 8.06 -52.49 -0.42 1.24 15 24 H 0.13 1.89 6.96 -52.49 -0.37 1.52 15 25 H 0.06 0.73 8.14 -51.93 -0.42 0.30 15 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 15 27 H 0.38 2.38 9.12 45.56 0.42 2.79 15 28 H 0.30 6.17 8.29 -40.82 -0.34 5.83 15 LS Contribution 263.51 15.07 3.97 3.97 Total: -1.00 -27.56 263.51 -6.28 -33.84 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -1.16 Total: 2.44 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -3.63 Total: -16.55 kcal Atomic # 7 Polarization: -30.85 SS G_CDS: 1.55 Total: -29.30 kcal Atomic # 8 Polarization: -6.57 SS G_CDS: -0.43 Total: -6.99 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -4.15 Total: 14.02 kcal Atomic # 16 Polarization: 1.02 SS G_CDS: -2.45 Total: -1.43 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -27.56 -6.28 -33.84 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396220909.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.020 kcal (2) G-P(sol) polarization free energy of solvation -27.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds