Wall clock time and date at job start Mon Mar 30 2020 06:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 S 1.75163 * 124.63230 * 234.78922 * 3 2 1 5 5 C 1.75866 * 92.83758 * 179.83064 * 4 3 2 6 6 C 1.39333 * 110.80400 * 0.33548 * 5 4 3 7 7 C 1.40813 * 119.07244 * 179.82066 * 6 5 4 8 8 C 1.37370 * 120.46418 * 359.72593 * 7 6 5 9 9 C 1.38651 * 120.25362 * 0.02562 * 8 7 6 10 10 C 1.37552 * 120.12754 * 359.97438 * 9 8 7 11 11 C 1.50701 * 119.75550 * 179.97438 * 10 9 8 12 12 O 1.42896 * 109.47034 * 0.02562 * 11 10 9 13 13 C 1.38645 * 124.63221 * 54.80776 * 3 2 1 14 14 C 1.39668 * 123.34564 * 0.02562 * 13 3 2 15 15 H 1.08001 * 120.00091 * 318.42692 * 14 13 3 16 16 C 1.40438 * 120.00034 * 138.43583 * 14 13 3 17 17 N 1.30611 * 120.00095 * 156.13842 * 16 14 13 18 18 Si 1.86804 * 119.99827 * 336.13596 * 16 14 13 19 19 H 1.48493 * 109.46976 * 95.36793 * 18 16 14 20 20 H 1.48502 * 109.47032 * 215.36590 * 18 16 14 21 21 H 1.48495 * 109.46961 * 335.36365 * 18 16 14 22 22 H 1.08002 * 119.76867 * 179.70559 * 7 6 5 23 23 H 1.07998 * 119.87501 * 180.02562 * 8 7 6 24 24 H 1.07993 * 119.93317 * 179.97438 * 9 8 7 25 25 H 1.08999 * 109.47490 * 240.00128 * 11 10 9 26 26 H 1.09002 * 109.46680 * 120.00490 * 11 10 9 27 27 H 0.96700 * 113.99939 * 179.97438 * 12 11 10 28 28 H 0.97001 * 120.00046 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 16 3.5632 0.8321 1.1776 5 6 5.0582 0.2943 0.4235 6 6 4.7929 -0.4896 -0.6975 7 6 5.8708 -1.0110 -1.4385 8 6 7.1658 -0.7457 -1.0647 9 6 7.4248 0.0391 0.0485 10 6 6.3850 0.5573 0.7850 11 6 6.6761 1.4089 1.9938 12 8 8.0900 1.5291 2.1624 13 6 3.3563 -0.6565 -0.9323 14 6 2.8329 -1.4025 -1.9907 15 1 1.9818 -2.0472 -1.8281 16 6 3.4135 -1.3145 -3.2664 17 7 3.2704 -2.2943 -4.1181 18 14 4.3903 0.2041 -3.7453 19 1 5.8348 -0.0394 -3.5020 20 1 4.1735 0.4986 -5.1846 21 1 3.9390 1.3603 -2.9301 22 1 5.6781 -1.6239 -2.3065 23 1 7.9854 -1.1501 -1.6402 24 1 8.4449 0.2440 0.3379 25 1 6.2426 0.9436 2.8790 26 1 6.2417 2.3988 1.8539 27 1 8.3511 2.0657 2.9233 28 1 3.6711 -2.2334 -4.9994 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396220909.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:02 Heat of formation + Delta-G solvation = -8.967571 kcal Electronic energy + Delta-G solvation = -16215.946366 eV Core-core repulsion = 13515.019514 eV Total energy + Delta-G solvation = -2700.926852 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.61941 -38.10925 -37.26374 -36.29098 -34.78362 -32.58799 -30.62043 -28.85197 -26.78402 -24.25659 -23.27848 -21.61097 -19.95750 -18.58776 -17.92130 -17.82614 -16.88611 -16.40443 -15.92016 -15.63175 -15.39056 -14.96752 -14.94148 -14.67207 -14.01840 -13.81623 -13.71139 -13.49753 -13.24921 -12.93662 -12.58305 -12.31046 -12.05073 -11.86621 -11.58188 -11.40311 -11.28084 -11.02202 -9.96316 -9.30434 -9.18223 -8.60972 -6.69981 -0.29656 0.30500 0.76753 1.00952 1.23863 1.28528 1.37150 1.44480 2.02292 2.32889 2.36557 2.64673 3.02316 3.31386 3.56971 3.94392 4.17699 4.22464 4.41105 4.45842 4.59702 4.65527 4.84679 4.86169 5.09294 5.20920 5.51715 5.54544 5.72298 5.85610 6.04289 6.24471 6.40301 6.91737 6.99268 7.85675 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.018145 B = 0.010480 C = 0.007221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.764775 B = 2671.203612 C = 3876.502858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C 0.328 3.672 3 C -0.361 4.361 4 S 0.094 5.906 5 C -0.112 4.112 6 C -0.108 4.108 7 C -0.086 4.086 8 C -0.131 4.131 9 C -0.070 4.070 10 C -0.085 4.085 11 C 0.125 3.875 12 O -0.576 6.576 13 C 0.134 3.866 14 C -0.439 4.439 15 H 0.064 0.936 16 C 0.070 3.930 17 N -0.792 5.792 18 Si 0.923 3.077 19 H -0.206 1.206 20 H -0.262 1.262 21 H -0.265 1.265 22 H 0.119 0.881 23 H 0.157 0.843 24 H 0.159 0.841 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.403 0.597 28 H 0.308 0.692 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.237 6.437 5.770 17.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.216 5.216 2 C 0.020 3.980 3 C -0.480 4.480 4 S 0.354 5.646 5 C -0.228 4.228 6 C -0.116 4.116 7 C -0.106 4.106 8 C -0.152 4.152 9 C -0.090 4.090 10 C -0.092 4.092 11 C 0.047 3.953 12 O -0.385 6.385 13 C 0.122 3.878 14 C -0.469 4.469 15 H 0.082 0.918 16 C -0.153 4.153 17 N -0.414 5.414 18 Si 0.742 3.258 19 H -0.129 1.129 20 H -0.187 1.187 21 H -0.189 1.189 22 H 0.137 0.863 23 H 0.175 0.825 24 H 0.177 0.823 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.254 0.746 28 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 13.030 6.767 6.250 15.958 hybrid contribution -0.042 -0.597 -1.268 1.402 sum 12.988 6.170 4.983 15.218 Atomic orbital electron populations 1.81013 1.12432 1.15274 1.12924 1.24650 0.91453 0.90866 0.90988 1.19084 0.87494 1.25731 1.15709 1.82488 0.92506 1.57590 1.32027 1.22469 0.97487 1.02832 0.99963 1.19359 0.93072 1.01837 0.97324 1.21232 0.92272 0.98702 0.98404 1.21254 0.95675 0.99948 0.98328 1.21099 0.99704 0.94858 0.93352 1.19403 0.89369 1.01328 0.99086 1.20736 0.82620 0.97780 0.94159 1.86348 1.20996 1.76411 1.54753 1.17636 0.89279 0.88465 0.92442 1.19016 1.13327 1.20722 0.93828 0.91807 1.26856 0.94206 0.99020 0.95248 1.69610 1.32996 1.30596 1.08209 0.86237 0.82310 0.78579 0.78652 1.12882 1.18740 1.18875 0.86290 0.82528 0.82307 0.91157 0.91234 0.74566 0.87991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -27.90 18.54 19.01 0.35 -27.55 15 2 C 0.33 16.76 15.21 88.33 1.34 18.10 15 3 C -0.36 -17.31 6.31 23.62 0.15 -17.16 15 4 S 0.09 3.58 22.75 -56.49 -1.29 2.30 15 5 C -0.11 -4.18 6.27 22.96 0.14 -4.04 15 6 C -0.11 -4.55 4.78 -20.23 -0.10 -4.65 15 7 C -0.09 -3.21 6.51 22.70 0.15 -3.06 15 8 C -0.13 -3.84 10.01 22.16 0.22 -3.62 15 9 C -0.07 -1.93 9.36 22.21 0.21 -1.73 15 10 C -0.09 -2.58 5.91 -19.60 -0.12 -2.70 15 11 C 0.12 2.75 7.06 71.24 0.50 3.26 15 12 O -0.58 -10.32 12.10 -148.98 -1.80 -12.12 15 13 C 0.13 6.57 4.72 -20.68 -0.10 6.47 15 14 C -0.44 -23.20 8.98 23.15 0.21 -22.99 15 15 H 0.06 3.78 8.06 -2.91 -0.02 3.76 15 16 C 0.07 3.38 4.48 85.41 0.38 3.77 15 17 N -0.79 -38.26 13.92 21.91 0.31 -37.96 15 18 Si 0.92 36.94 24.40 68.60 1.67 38.62 15 19 H -0.21 -7.11 5.59 99.48 0.56 -6.55 15 20 H -0.26 -9.82 7.11 99.48 0.71 -9.11 15 21 H -0.26 -11.60 7.11 99.48 0.71 -10.90 15 22 H 0.12 4.55 5.62 -2.91 -0.02 4.53 15 23 H 0.16 3.45 8.06 -2.91 -0.02 3.42 15 24 H 0.16 3.60 6.96 -2.91 -0.02 3.58 15 25 H 0.07 1.43 8.14 -2.39 -0.02 1.41 15 26 H 0.07 1.42 8.14 -2.39 -0.02 1.40 15 27 H 0.40 3.00 9.12 -74.06 -0.68 2.33 15 28 H 0.31 12.97 8.29 -92.71 -0.77 12.20 15 Total: -1.00 -61.64 263.51 2.64 -59.00 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: 0.40 Total: 6.07 kcal Atomic # 6 Polarization: -31.35 SS G_CDS: 3.00 Total: -28.35 kcal Atomic # 7 Polarization: -66.16 SS G_CDS: 0.66 Total: -65.51 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: -1.80 Total: -12.12 kcal Atomic # 14 Polarization: 36.94 SS G_CDS: 1.67 Total: 38.62 kcal Atomic # 16 Polarization: 3.58 SS G_CDS: -1.29 Total: 2.30 kcal Total: -61.64 2.64 -59.00 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396220909.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.031 kcal (2) G-P(sol) polarization free energy of solvation -61.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds