Wall clock time and date at job start Mon Mar 30 2020 06:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.40356 * 119.92595 * 357.99860 * 3 2 1 5 5 C 1.36205 * 120.24008 * 180.25595 * 4 3 2 6 6 C 1.39874 * 120.78696 * 0.02562 * 5 4 3 7 7 S 1.76052 * 130.06164 * 180.02562 * 6 5 4 8 8 C 1.75439 * 91.82244 * 179.97438 * 7 6 5 9 9 C 1.39921 * 124.80238 * 179.97438 * 8 7 6 10 10 H 1.07995 * 120.00407 * 179.97438 * 9 8 7 11 11 C 1.40189 * 119.99532 * 359.97438 * 9 8 7 12 12 N 1.30753 * 120.00443 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99569 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47495 * 90.00211 * 13 11 9 15 15 H 1.48505 * 109.46691 * 209.99902 * 13 11 9 16 16 H 1.48498 * 109.47157 * 329.99711 * 13 11 9 17 17 C 1.36890 * 110.40041 * 359.97438 * 8 7 6 18 18 C 1.50699 * 122.49295 * 180.02562 * 17 8 7 19 19 O 1.42898 * 109.47234 * 269.97875 * 18 17 8 20 20 C 1.39896 * 115.01140 * 0.02562 * 17 8 7 21 21 C 1.38505 * 119.91983 * 178.27256 * 3 2 1 22 22 H 1.08000 * 119.88087 * 0.27615 * 4 3 2 23 23 H 1.07995 * 119.60393 * 179.97438 * 5 4 3 24 24 H 0.97003 * 120.00090 * 179.97438 * 12 11 9 25 25 H 1.08998 * 109.46848 * 29.98082 * 18 17 8 26 26 H 1.08997 * 109.46824 * 149.97706 * 18 17 8 27 27 H 0.96703 * 114.00245 * 180.02562 * 19 18 17 28 28 H 1.07999 * 119.95194 * 359.72443 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2687 -1.2147 0.0425 5 6 4.6307 -1.2214 0.0480 6 6 5.3527 -0.0239 0.0122 7 16 7.0916 0.2511 0.0095 8 6 6.8728 1.9909 -0.0478 9 6 7.9132 2.9262 -0.0740 10 1 7.6894 3.9821 -0.1095 11 6 9.2462 2.4925 -0.0540 12 7 9.5173 1.2141 -0.0115 13 14 10.6351 3.7412 -0.0882 14 1 10.9970 4.1173 1.3021 15 1 11.8171 3.1484 -0.7642 16 1 10.1956 4.9504 -0.8297 17 6 5.5403 2.3040 -0.0633 18 6 5.0433 3.7258 -0.1120 19 8 4.8805 4.2193 1.2191 20 6 4.6743 1.2058 -0.0306 21 6 3.2583 1.2009 -0.0362 22 1 2.7260 -2.1480 0.0706 23 1 5.1595 -2.1625 0.0813 24 1 10.4396 0.9140 0.0020 25 1 5.7659 4.3452 -0.6433 26 1 4.0855 3.7583 -0.6313 27 1 4.5618 5.1312 1.2643 28 1 2.7158 2.1341 -0.0688 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396220912.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:50 Heat of formation + Delta-G solvation = -9.316556 kcal Electronic energy + Delta-G solvation = -15883.817914 eV Core-core repulsion = 13182.875929 eV Total energy + Delta-G solvation = -2700.941985 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.72419 -36.61099 -35.71935 -34.82983 -33.27889 -30.38027 -29.43038 -26.77309 -24.99016 -22.84724 -21.70281 -19.35795 -17.96712 -17.24858 -16.56674 -16.23346 -15.27628 -14.57656 -14.45235 -13.55283 -13.48759 -13.39889 -13.16576 -12.57392 -12.49984 -12.28783 -12.15023 -11.90254 -11.68543 -11.39770 -11.23618 -10.67488 -10.46520 -10.39623 -9.91789 -9.47811 -9.25251 -9.13470 -8.64468 -7.63114 -7.36704 -6.59561 -4.88570 1.55706 1.91386 2.68971 2.75954 2.82007 3.04816 3.12639 3.24077 3.44169 3.61852 3.65245 4.49869 4.51779 4.74690 5.54711 5.60929 5.71245 6.07713 6.14734 6.20806 6.36242 6.46473 6.52989 6.73435 6.93766 6.96411 7.12385 7.35159 7.47699 7.64753 7.82636 7.95935 8.08179 8.24342 8.45912 9.46234 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.031150 B = 0.006456 C = 0.005430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.668183 B = 4336.063723 C = 5154.934830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C 0.277 3.723 3 C -0.034 4.034 4 C -0.150 4.150 5 C -0.052 4.052 6 C -0.244 4.244 7 S 0.156 5.844 8 C 0.068 3.932 9 C -0.367 4.367 10 H 0.103 0.897 11 C 0.053 3.947 12 N -0.769 5.769 13 Si 0.940 3.060 14 H -0.261 1.261 15 H -0.270 1.270 16 H -0.255 1.255 17 C -0.336 4.336 18 C 0.172 3.828 19 O -0.572 6.572 20 C 0.029 3.971 21 C -0.087 4.087 22 H 0.113 0.887 23 H 0.112 0.888 24 H 0.305 0.695 25 H 0.038 0.962 26 H 0.026 0.974 27 H 0.354 0.646 28 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.029 1.325 -1.068 2.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.137 5.137 2 C -0.037 4.037 3 C -0.040 4.040 4 C -0.173 4.173 5 C -0.075 4.075 6 C -0.359 4.359 7 S 0.419 5.581 8 C -0.052 4.052 9 C -0.401 4.401 10 H 0.121 0.879 11 C -0.170 4.170 12 N -0.395 5.395 13 Si 0.763 3.237 14 H -0.186 1.186 15 H -0.194 1.194 16 H -0.179 1.179 17 C -0.342 4.342 18 C 0.094 3.906 19 O -0.376 6.376 20 C 0.021 3.979 21 C -0.110 4.110 22 H 0.131 0.869 23 H 0.130 0.870 24 H 0.118 0.882 25 H 0.056 0.944 26 H 0.044 0.956 27 H 0.198 0.802 28 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.964 -0.394 -0.894 2.194 hybrid contribution -0.407 1.892 -0.165 1.943 sum 1.557 1.499 -1.059 2.407 Atomic orbital electron populations 1.81128 1.12419 1.08895 1.11292 1.26082 0.92980 0.92348 0.92277 1.15601 0.83057 0.95163 1.10160 1.20104 0.93707 0.95198 1.08324 1.19801 0.92772 0.95636 0.99264 1.23942 1.03106 0.96026 1.12872 1.84947 0.93944 1.01782 1.77447 1.21258 0.94807 0.95502 0.93605 1.19426 0.88916 0.95538 1.36179 0.87910 1.26389 1.01653 0.96767 0.92194 1.68581 1.23936 1.15455 1.31520 0.85719 0.78018 0.79986 0.80020 1.18588 1.19445 1.17874 1.17916 0.90984 0.92357 1.32944 1.20127 0.96317 0.91940 0.82238 1.86761 1.89588 1.31427 1.29818 1.17614 0.91806 0.92172 0.96290 1.20826 0.92851 0.95307 1.01974 0.86869 0.86980 0.88202 0.94415 0.95605 0.80153 0.86960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -8.82 18.54 41.84 0.78 -8.04 15 2 C 0.28 5.06 15.31 -22.47 -0.34 4.72 15 3 C -0.03 -0.63 5.72 -107.08 -0.61 -1.24 15 4 C -0.15 -2.65 9.69 -39.52 -0.38 -3.03 15 5 C -0.05 -0.98 9.98 -39.70 -0.40 -1.37 15 6 C -0.24 -5.28 6.48 -38.11 -0.25 -5.53 15 7 S 0.16 3.49 20.12 -107.50 -2.16 1.33 15 8 C 0.07 1.63 6.11 -39.44 -0.24 1.39 15 9 C -0.37 -8.38 8.83 -38.22 -0.34 -8.71 15 10 H 0.10 2.24 6.66 -52.49 -0.35 1.89 15 11 C 0.05 1.11 5.50 -17.28 -0.10 1.01 15 12 N -0.77 -16.52 10.58 55.56 0.59 -15.93 15 13 Si 0.94 15.72 29.56 -169.99 -5.03 10.69 15 14 H -0.26 -4.39 7.11 56.52 0.40 -3.98 15 15 H -0.27 -4.38 7.11 56.52 0.40 -3.98 15 16 H -0.26 -4.22 7.11 56.52 0.40 -3.81 15 17 C -0.34 -7.75 5.58 -104.49 -0.58 -8.33 15 18 C 0.17 3.44 6.75 36.01 0.24 3.68 15 19 O -0.57 -11.23 13.64 -35.23 -0.48 -11.71 15 20 C 0.03 0.65 5.83 -107.14 -0.63 0.03 15 21 C -0.09 -1.74 9.37 -38.20 -0.36 -2.09 15 22 H 0.11 1.69 8.06 -52.49 -0.42 1.27 15 23 H 0.11 1.82 8.06 -52.49 -0.42 1.39 15 24 H 0.30 5.81 8.29 -40.82 -0.34 5.47 15 25 H 0.04 0.72 6.89 -51.93 -0.36 0.36 15 26 H 0.03 0.47 7.33 -51.93 -0.38 0.09 15 27 H 0.35 4.87 9.12 45.56 0.42 5.29 15 28 H 0.11 2.11 7.40 -52.49 -0.39 1.72 15 LS Contribution 270.72 15.07 4.08 4.08 Total: -1.00 -26.11 270.72 -7.25 -33.36 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -1.04 Total: 5.71 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: -3.98 Total: -19.49 kcal Atomic # 7 Polarization: -25.33 SS G_CDS: 1.36 Total: -23.97 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: -0.48 Total: -11.71 kcal Atomic # 14 Polarization: 15.72 SS G_CDS: -5.03 Total: 10.69 kcal Atomic # 16 Polarization: 3.49 SS G_CDS: -2.16 Total: 1.33 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -26.11 -7.25 -33.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396220912.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.039 kcal (2) G-P(sol) polarization free energy of solvation -26.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds