Wall clock time and date at job start Mon Mar 30 2020 06:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.40356 * 119.92595 * 357.99860 * 3 2 1 5 5 C 1.36205 * 120.24008 * 180.25595 * 4 3 2 6 6 C 1.39874 * 120.78696 * 0.02562 * 5 4 3 7 7 S 1.76052 * 130.06164 * 180.02562 * 6 5 4 8 8 C 1.75439 * 91.82244 * 179.97438 * 7 6 5 9 9 C 1.39921 * 124.80238 * 179.97438 * 8 7 6 10 10 H 1.07995 * 120.00407 * 179.97438 * 9 8 7 11 11 C 1.40189 * 119.99532 * 359.97438 * 9 8 7 12 12 N 1.30753 * 120.00443 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99569 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47495 * 90.00211 * 13 11 9 15 15 H 1.48505 * 109.46691 * 209.99902 * 13 11 9 16 16 H 1.48498 * 109.47157 * 329.99711 * 13 11 9 17 17 C 1.36890 * 110.40041 * 359.97438 * 8 7 6 18 18 C 1.50699 * 122.49295 * 180.02562 * 17 8 7 19 19 O 1.42898 * 109.47234 * 269.97875 * 18 17 8 20 20 C 1.39896 * 115.01140 * 0.02562 * 17 8 7 21 21 C 1.38505 * 119.91983 * 178.27256 * 3 2 1 22 22 H 1.08000 * 119.88087 * 0.27615 * 4 3 2 23 23 H 1.07995 * 119.60393 * 179.97438 * 5 4 3 24 24 H 0.97003 * 120.00090 * 179.97438 * 12 11 9 25 25 H 1.08998 * 109.46848 * 29.98082 * 18 17 8 26 26 H 1.08997 * 109.46824 * 149.97706 * 18 17 8 27 27 H 0.96703 * 114.00245 * 180.02562 * 19 18 17 28 28 H 1.07999 * 119.95194 * 359.72443 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2687 -1.2147 0.0425 5 6 4.6307 -1.2214 0.0480 6 6 5.3527 -0.0239 0.0122 7 16 7.0916 0.2511 0.0095 8 6 6.8728 1.9909 -0.0478 9 6 7.9132 2.9262 -0.0740 10 1 7.6894 3.9821 -0.1095 11 6 9.2462 2.4925 -0.0540 12 7 9.5173 1.2141 -0.0115 13 14 10.6351 3.7412 -0.0882 14 1 10.9970 4.1173 1.3021 15 1 11.8171 3.1484 -0.7642 16 1 10.1956 4.9504 -0.8297 17 6 5.5403 2.3040 -0.0633 18 6 5.0433 3.7258 -0.1120 19 8 4.8805 4.2193 1.2191 20 6 4.6743 1.2058 -0.0306 21 6 3.2583 1.2009 -0.0362 22 1 2.7260 -2.1480 0.0706 23 1 5.1595 -2.1625 0.0813 24 1 10.4396 0.9140 0.0020 25 1 5.7659 4.3452 -0.6433 26 1 4.0855 3.7583 -0.6313 27 1 4.5618 5.1312 1.2643 28 1 2.7158 2.1341 -0.0688 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396220912.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:50 Heat of formation + Delta-G solvation = -24.156614 kcal Electronic energy + Delta-G solvation = -15884.461428 eV Core-core repulsion = 13182.875929 eV Total energy + Delta-G solvation = -2701.585499 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.28155 -38.15144 -37.23665 -36.40914 -34.84903 -31.91313 -31.03603 -28.35621 -26.58185 -24.39137 -23.27423 -20.90547 -19.60927 -18.79712 -18.09168 -17.81890 -16.80199 -16.10001 -15.96157 -15.04485 -15.00494 -14.92289 -14.66121 -14.09801 -14.06076 -13.83499 -13.67901 -13.41956 -13.11548 -12.94301 -12.77314 -12.06913 -11.95876 -11.90756 -11.47065 -11.03486 -10.92223 -10.65251 -10.21549 -9.26116 -8.92585 -8.26413 -6.54990 0.01090 0.34372 1.29166 1.37044 1.40941 1.54853 1.64678 1.75425 1.88566 2.10861 2.14459 2.89917 2.99656 3.19340 4.07945 4.15696 4.30236 4.55096 4.64950 4.69324 4.80070 4.92067 4.98021 5.18735 5.39954 5.43026 5.59952 5.73965 5.86650 6.06645 6.21202 6.44217 6.48342 6.59292 7.20015 7.93663 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.031150 B = 0.006456 C = 0.005430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.668183 B = 4336.063723 C = 5154.934830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C 0.292 3.708 3 C -0.029 4.029 4 C -0.134 4.134 5 C -0.056 4.056 6 C -0.260 4.260 7 S 0.136 5.864 8 C 0.038 3.962 9 C -0.396 4.396 10 H 0.103 0.897 11 C 0.019 3.981 12 N -0.793 5.793 13 Si 1.007 2.993 14 H -0.260 1.260 15 H -0.259 1.259 16 H -0.253 1.253 17 C -0.363 4.363 18 C 0.177 3.823 19 O -0.592 6.592 20 C 0.004 3.996 21 C -0.092 4.092 22 H 0.149 0.851 23 H 0.138 0.862 24 H 0.314 0.686 25 H 0.039 0.961 26 H 0.040 0.960 27 H 0.379 0.621 28 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.681 1.045 -1.097 2.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.147 5.147 2 C -0.022 4.022 3 C -0.035 4.035 4 C -0.156 4.156 5 C -0.078 4.078 6 C -0.376 4.376 7 S 0.399 5.601 8 C -0.081 4.081 9 C -0.429 4.429 10 H 0.121 0.879 11 C -0.201 4.201 12 N -0.419 5.419 13 Si 0.826 3.174 14 H -0.185 1.185 15 H -0.183 1.183 16 H -0.176 1.176 17 C -0.370 4.370 18 C 0.098 3.902 19 O -0.399 6.399 20 C -0.003 4.003 21 C -0.115 4.115 22 H 0.167 0.833 23 H 0.156 0.844 24 H 0.128 0.872 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.227 0.773 28 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.593 -0.669 -0.924 1.959 hybrid contribution -0.447 1.902 -0.136 1.958 sum 1.146 1.233 -1.061 1.990 Atomic orbital electron populations 1.81158 1.12692 1.09291 1.11575 1.25838 0.92570 0.91943 0.91869 1.15657 0.83168 0.95187 1.09489 1.20498 0.93349 0.96191 1.05589 1.20140 0.93352 0.95705 0.98620 1.24191 1.02633 0.97135 1.13600 1.84729 0.95355 1.01856 1.78151 1.21614 0.95681 0.96177 0.94655 1.19675 0.89960 0.95569 1.37724 0.87870 1.27231 1.03176 0.98499 0.91170 1.68610 1.25011 1.16777 1.31472 0.84756 0.75125 0.77611 0.79924 1.18498 1.18315 1.17586 1.18374 0.91140 0.94100 1.33370 1.20060 0.96925 0.90733 0.82449 1.86676 1.89898 1.33660 1.29690 1.17851 0.92812 0.92338 0.97338 1.20913 0.92121 0.96392 1.02103 0.83338 0.84391 0.87249 0.94246 0.94147 0.77305 0.86165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -16.87 18.54 19.00 0.35 -16.52 15 2 C 0.29 9.90 15.31 88.33 1.35 11.26 15 3 C -0.03 -1.01 5.72 -21.45 -0.12 -1.13 15 4 C -0.13 -4.29 9.69 22.31 0.22 -4.07 15 5 C -0.06 -1.98 9.98 22.19 0.22 -1.76 15 6 C -0.26 -11.21 6.48 23.22 0.15 -11.06 15 7 S 0.14 6.24 20.12 -56.49 -1.14 5.11 15 8 C 0.04 1.88 6.11 22.36 0.14 2.02 15 9 C -0.40 -18.51 8.83 23.15 0.20 -18.31 15 10 H 0.10 4.61 6.66 -2.91 -0.02 4.59 15 11 C 0.02 0.81 5.50 85.33 0.47 1.28 15 12 N -0.79 -34.44 10.58 21.87 0.23 -34.21 15 13 Si 1.01 31.76 29.56 68.60 2.03 33.78 15 14 H -0.26 -8.12 7.11 99.48 0.71 -7.41 15 15 H -0.26 -7.65 7.11 99.48 0.71 -6.94 15 16 H -0.25 -7.76 7.11 99.48 0.71 -7.05 15 17 C -0.36 -17.07 5.58 -19.78 -0.11 -17.18 15 18 C 0.18 7.09 6.75 71.24 0.48 7.57 15 19 O -0.59 -23.06 13.64 -148.98 -2.03 -25.09 15 20 C 0.00 0.20 5.83 -21.49 -0.13 0.07 15 21 C -0.09 -3.61 9.37 23.16 0.22 -3.39 15 22 H 0.15 3.74 8.06 -2.91 -0.02 3.72 15 23 H 0.14 4.11 8.06 -2.91 -0.02 4.09 15 24 H 0.31 11.99 8.29 -92.71 -0.77 11.22 15 25 H 0.04 1.53 6.89 -2.39 -0.02 1.51 15 26 H 0.04 1.46 7.33 -2.39 -0.02 1.44 15 27 H 0.38 10.08 9.12 -74.06 -0.68 9.40 15 28 H 0.12 4.39 7.40 -2.91 -0.02 4.37 15 Total: -1.00 -55.77 270.72 3.09 -52.68 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 0.55 Total: 18.95 kcal Atomic # 6 Polarization: -37.79 SS G_CDS: 3.09 Total: -34.70 kcal Atomic # 7 Polarization: -51.31 SS G_CDS: 0.58 Total: -50.73 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -2.03 Total: -25.09 kcal Atomic # 14 Polarization: 31.76 SS G_CDS: 2.03 Total: 33.78 kcal Atomic # 16 Polarization: 6.24 SS G_CDS: -1.14 Total: 5.11 kcal Total: -55.77 3.09 -52.68 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396220912.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.522 kcal (2) G-P(sol) polarization free energy of solvation -55.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds