Wall clock time and date at job start Mon Mar 30 2020 06:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35724 * 117.00209 * 2 1 4 4 C 1.37720 * 119.90301 * 359.97046 * 3 2 1 5 5 C 1.39508 * 120.83691 * 180.21488 * 4 3 2 6 6 C 1.43201 * 119.40837 * 179.73935 * 5 4 3 7 7 N 5.81483 * 80.31619 * 359.83777 * 2 1 3 8 8 C 1.41335 * 121.18672 * 359.57288 * 5 4 3 9 9 S 1.76084 * 130.53419 * 180.13938 * 8 5 4 10 10 C 1.75509 * 91.49155 * 180.28346 * 9 8 5 11 11 C 1.32623 * 110.61802 * 359.97438 * 10 9 8 12 12 C 1.39291 * 120.08851 * 0.44547 * 8 5 4 13 13 C 1.41162 * 119.90488 * 179.97438 * 3 2 1 14 14 C 1.39976 * 120.26193 * 0.02562 * 13 3 2 15 15 H 1.07994 * 120.00092 * 39.85302 * 14 13 3 16 16 C 1.40289 * 119.99777 * 219.85427 * 14 13 3 17 17 N 1.30685 * 120.00282 * 19.92415 * 16 14 13 18 18 Si 1.86799 * 120.00030 * 199.92346 * 16 14 13 19 19 H 1.48502 * 109.46991 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47454 * 119.99711 * 18 16 14 21 21 H 1.48499 * 109.47364 * 240.00210 * 18 16 14 22 22 H 1.08997 * 109.47425 * 300.00242 * 1 2 3 23 23 H 1.09002 * 109.46816 * 60.00917 * 1 2 3 24 24 H 1.09001 * 109.47059 * 180.02562 * 1 2 3 25 25 H 1.08003 * 119.58057 * 0.02562 * 4 3 2 26 26 H 1.08001 * 124.69775 * 180.02562 * 10 9 8 27 27 H 1.07993 * 122.10171 * 180.02562 * 11 10 9 28 28 H 0.97001 * 119.99879 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2932 2.3631 -0.0006 5 6 1.9063 3.6162 -0.0051 6 6 1.0947 4.7960 -0.0113 7 7 0.4509 5.7320 -0.0162 8 6 3.3140 3.7423 -0.0002 9 16 4.3344 5.1774 -0.0008 10 6 5.7907 4.1979 -0.0009 11 6 5.4855 2.9073 0.0001 12 6 4.1171 2.6042 0.0000 13 6 3.4550 1.2808 0.0005 14 6 4.2208 0.1090 0.0005 15 1 3.9154 -0.7356 -0.5991 16 6 5.3849 0.0319 0.7796 17 7 5.5579 0.8554 1.7795 18 14 6.6880 -1.2479 0.3876 19 1 6.2558 -2.0515 -0.7840 20 1 7.9710 -0.5685 0.0750 21 1 6.8733 -2.1407 1.5597 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 0.2152 2.2969 -0.0007 26 1 6.7964 4.5916 -0.0008 27 1 6.2437 2.1382 0.0006 28 1 6.3630 0.8023 2.3178 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396221975.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:47 Heat of formation + Delta-G solvation = 30.166278 kcal Electronic energy + Delta-G solvation = -16361.506243 eV Core-core repulsion = 13662.276362 eV Total energy + Delta-G solvation = -2699.229881 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.05328 -37.15905 -35.81314 -34.12768 -33.32929 -30.46458 -28.00989 -26.76256 -25.85349 -22.48465 -22.18722 -19.64017 -18.26443 -17.76061 -16.07436 -15.86250 -15.57583 -14.85651 -14.72567 -14.17052 -13.61857 -13.15877 -12.93263 -12.64597 -12.30678 -12.17854 -11.90747 -11.76566 -11.51390 -11.25977 -11.07411 -11.00472 -10.77288 -10.74398 -10.25013 -9.76240 -9.52171 -9.31075 -8.16658 -7.39651 -7.35769 -6.69876 -4.71738 1.66001 2.06867 2.52424 2.77733 2.85374 2.91397 2.96709 3.32574 3.58562 3.59284 3.93575 4.23647 4.36059 5.06210 5.07449 5.62732 5.70593 5.71265 5.92751 5.95559 6.31305 6.36692 6.54531 6.63184 6.78864 6.94547 7.08891 7.30472 7.47649 7.58557 7.83713 8.09458 8.18650 8.45797 8.62006 9.60847 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.017698 B = 0.010058 C = 0.006635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.725673 B = 2783.254955 C = 4218.724916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.307 6.307 3 C 0.002 3.998 4 C -0.089 4.089 5 C -0.144 4.144 6 C 0.283 3.717 7 N -0.494 5.494 8 C -0.048 4.048 9 S 0.016 5.984 10 C -0.268 4.268 11 C -0.031 4.031 12 C -0.130 4.130 13 C 0.167 3.833 14 C -0.401 4.401 15 H 0.103 0.897 16 C 0.071 3.929 17 N -0.741 5.741 18 Si 0.911 3.089 19 H -0.252 1.252 20 H -0.265 1.265 21 H -0.268 1.268 22 H 0.043 0.957 23 H 0.043 0.957 24 H 0.086 0.914 25 H 0.112 0.888 26 H 0.147 0.853 27 H 0.129 0.871 28 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.314 -3.661 -1.634 4.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.222 6.222 3 C -0.044 4.044 4 C -0.112 4.112 5 C -0.156 4.156 6 C -0.027 4.027 7 N -0.173 5.173 8 C -0.166 4.166 9 S 0.276 5.724 10 C -0.401 4.401 11 C -0.060 4.060 12 C -0.138 4.138 13 C 0.161 3.839 14 C -0.427 4.427 15 H 0.120 0.880 16 C -0.154 4.154 17 N -0.361 5.361 18 Si 0.733 3.267 19 H -0.176 1.176 20 H -0.190 1.190 21 H -0.193 1.193 22 H 0.062 0.938 23 H 0.061 0.939 24 H 0.104 0.896 25 H 0.130 0.870 26 H 0.165 0.835 27 H 0.147 0.853 28 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.412 -0.775 -1.422 1.671 hybrid contribution 0.901 -2.122 0.141 2.309 sum 1.312 -2.896 -1.281 3.428 Atomic orbital electron populations 1.22813 0.81118 1.02267 1.00261 1.85992 1.18608 1.27035 1.90542 1.18430 0.91606 0.82916 1.11494 1.20330 0.97879 0.90582 1.02410 1.14134 0.87299 0.86698 1.27486 1.25958 0.92563 0.92709 0.91514 1.81063 1.10090 1.10941 1.15249 1.22173 0.94953 0.95411 1.04058 1.83726 0.98170 1.09598 1.80888 1.24630 0.99959 0.96389 1.19133 1.19680 0.95545 0.94838 0.95927 1.18566 0.91443 0.91059 1.12754 1.17766 0.87584 0.91261 0.87318 1.19688 1.03686 0.99655 1.19648 0.87959 1.26172 0.98545 0.97102 0.93586 1.69782 1.25701 1.30985 1.09660 0.86179 0.79696 0.80468 0.80362 1.17555 1.18951 1.19304 0.93822 0.93880 0.89593 0.86990 0.83485 0.85337 0.89397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 9.80 101.05 0.99 1.46 15 2 O -0.31 -6.17 9.91 -18.88 -0.19 -6.36 15 3 C 0.00 0.04 6.69 -38.66 -0.26 -0.22 15 4 C -0.09 -1.84 8.64 -39.30 -0.34 -2.18 15 5 C -0.14 -3.18 5.78 -106.32 -0.61 -3.79 15 6 C 0.28 6.20 14.99 -22.47 -0.34 5.87 15 7 N -0.49 -11.09 18.54 41.84 0.78 -10.31 15 8 C -0.05 -1.09 6.33 -38.01 -0.24 -1.33 15 9 S 0.02 0.32 22.97 -107.50 -2.47 -2.15 15 10 C -0.27 -5.24 11.11 28.83 0.32 -4.92 15 11 C -0.03 -0.66 8.25 -40.76 -0.34 -0.99 15 12 C -0.13 -3.01 5.50 -104.79 -0.58 -3.59 15 13 C 0.17 3.91 5.50 -104.14 -0.57 3.34 15 14 C -0.40 -9.02 8.40 -38.16 -0.32 -9.34 15 15 H 0.10 2.23 7.91 -52.49 -0.42 1.82 15 16 C 0.07 1.49 3.83 -17.27 -0.07 1.43 15 17 N -0.74 -16.23 10.83 55.57 0.60 -15.63 15 18 Si 0.91 15.57 29.61 -169.99 -5.03 10.54 15 19 H -0.25 -4.31 7.11 56.52 0.40 -3.91 15 20 H -0.26 -4.44 7.11 56.52 0.40 -4.04 15 21 H -0.27 -4.57 7.11 56.52 0.40 -4.17 15 22 H 0.04 0.62 7.64 -51.93 -0.40 0.22 15 23 H 0.04 0.59 7.64 -51.93 -0.40 0.19 15 24 H 0.09 1.03 8.14 -51.93 -0.42 0.60 15 25 H 0.11 2.02 6.20 -52.48 -0.33 1.70 15 26 H 0.15 2.43 8.06 -52.49 -0.42 2.01 15 27 H 0.13 2.69 6.07 -52.49 -0.32 2.37 15 28 H 0.29 5.77 8.29 -40.82 -0.34 5.44 15 LS Contribution 267.97 15.07 4.04 4.04 Total: -1.00 -25.46 267.97 -6.46 -31.92 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -1.83 Total: 2.22 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: -2.35 Total: -14.28 kcal Atomic # 7 Polarization: -27.32 SS G_CDS: 1.38 Total: -25.94 kcal Atomic # 8 Polarization: -6.17 SS G_CDS: -0.19 Total: -6.36 kcal Atomic # 14 Polarization: 15.57 SS G_CDS: -5.03 Total: 10.54 kcal Atomic # 16 Polarization: 0.32 SS G_CDS: -2.47 Total: -2.15 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -25.46 -6.46 -31.92 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396221975.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.089 kcal (2) G-P(sol) polarization free energy of solvation -25.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds