Wall clock time and date at job start Mon Mar 30 2020 06:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35724 * 117.00209 * 2 1 4 4 C 1.37720 * 119.90301 * 359.97046 * 3 2 1 5 5 C 1.39508 * 120.83691 * 180.21488 * 4 3 2 6 6 C 1.43201 * 119.40837 * 179.73935 * 5 4 3 7 7 N 5.81483 * 80.31619 * 359.83777 * 2 1 3 8 8 C 1.41335 * 121.18672 * 359.57288 * 5 4 3 9 9 S 1.76084 * 130.53419 * 180.13938 * 8 5 4 10 10 C 1.75509 * 91.49155 * 180.28346 * 9 8 5 11 11 C 1.32623 * 110.61802 * 359.97438 * 10 9 8 12 12 C 1.39291 * 120.08851 * 0.44547 * 8 5 4 13 13 C 1.41162 * 119.90488 * 179.97438 * 3 2 1 14 14 C 1.39976 * 120.26193 * 0.02562 * 13 3 2 15 15 H 1.07994 * 120.00092 * 39.85302 * 14 13 3 16 16 C 1.40289 * 119.99777 * 219.85427 * 14 13 3 17 17 N 1.30685 * 120.00282 * 19.92415 * 16 14 13 18 18 Si 1.86799 * 120.00030 * 199.92346 * 16 14 13 19 19 H 1.48502 * 109.46991 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47454 * 119.99711 * 18 16 14 21 21 H 1.48499 * 109.47364 * 240.00210 * 18 16 14 22 22 H 1.08997 * 109.47425 * 300.00242 * 1 2 3 23 23 H 1.09002 * 109.46816 * 60.00917 * 1 2 3 24 24 H 1.09001 * 109.47059 * 180.02562 * 1 2 3 25 25 H 1.08003 * 119.58057 * 0.02562 * 4 3 2 26 26 H 1.08001 * 124.69775 * 180.02562 * 10 9 8 27 27 H 1.07993 * 122.10171 * 180.02562 * 11 10 9 28 28 H 0.97001 * 119.99879 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2932 2.3631 -0.0006 5 6 1.9063 3.6162 -0.0051 6 6 1.0947 4.7960 -0.0113 7 7 0.4509 5.7320 -0.0162 8 6 3.3140 3.7423 -0.0002 9 16 4.3344 5.1774 -0.0008 10 6 5.7907 4.1979 -0.0009 11 6 5.4855 2.9073 0.0001 12 6 4.1171 2.6042 0.0000 13 6 3.4550 1.2808 0.0005 14 6 4.2208 0.1090 0.0005 15 1 3.9154 -0.7356 -0.5991 16 6 5.3849 0.0319 0.7796 17 7 5.5579 0.8554 1.7795 18 14 6.6880 -1.2479 0.3876 19 1 6.2558 -2.0515 -0.7840 20 1 7.9710 -0.5685 0.0750 21 1 6.8733 -2.1407 1.5597 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 0.2152 2.2969 -0.0007 26 1 6.7964 4.5916 -0.0008 27 1 6.2437 2.1382 0.0006 28 1 6.3630 0.8023 2.3178 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396221975.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:47 Heat of formation + Delta-G solvation = 17.854361 kcal Electronic energy + Delta-G solvation = -16362.040128 eV Core-core repulsion = 13662.276362 eV Total energy + Delta-G solvation = -2699.763766 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.63289 -38.71298 -37.53448 -35.75542 -34.94253 -32.10173 -29.62252 -28.11384 -27.46277 -24.10288 -23.81338 -21.22576 -19.89322 -19.41809 -17.65627 -17.39388 -17.15397 -16.32035 -16.19501 -15.77826 -15.11418 -14.83108 -14.42135 -14.26760 -13.93544 -13.82666 -13.51160 -13.27763 -12.98443 -12.88336 -12.62223 -12.46738 -12.23963 -12.09818 -11.74879 -11.37737 -11.09136 -10.90685 -9.81231 -9.00153 -8.97035 -8.33301 -6.39137 0.01457 0.38651 0.89129 1.33497 1.39914 1.45739 1.60067 1.71629 1.84993 2.17725 2.28036 2.70292 2.82430 3.37298 3.38559 4.14786 4.41896 4.50895 4.56250 4.70524 4.72520 4.84047 4.92939 5.05139 5.18262 5.30060 5.46347 5.66672 5.82741 5.94960 6.17797 6.45520 6.54343 6.73135 7.06300 8.06389 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.017698 B = 0.010058 C = 0.006635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.725673 B = 2783.254955 C = 4218.724916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.327 6.327 3 C -0.008 4.008 4 C -0.087 4.087 5 C -0.158 4.158 6 C 0.291 3.709 7 N -0.506 5.506 8 C -0.074 4.074 9 S 0.030 5.970 10 C -0.253 4.253 11 C -0.050 4.050 12 C -0.147 4.147 13 C 0.137 3.863 14 C -0.419 4.419 15 H 0.100 0.900 16 C 0.044 3.956 17 N -0.768 5.768 18 Si 0.977 3.023 19 H -0.253 1.253 20 H -0.256 1.256 21 H -0.265 1.265 22 H 0.049 0.951 23 H 0.054 0.946 24 H 0.116 0.884 25 H 0.136 0.864 26 H 0.181 0.819 27 H 0.130 0.870 28 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.007 -4.203 -1.725 4.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.242 6.242 3 C -0.054 4.054 4 C -0.110 4.110 5 C -0.170 4.170 6 C -0.019 4.019 7 N -0.186 5.186 8 C -0.192 4.192 9 S 0.290 5.710 10 C -0.385 4.385 11 C -0.079 4.079 12 C -0.155 4.155 13 C 0.131 3.869 14 C -0.445 4.445 15 H 0.118 0.882 16 C -0.179 4.179 17 N -0.389 5.389 18 Si 0.796 3.204 19 H -0.176 1.176 20 H -0.180 1.180 21 H -0.189 1.189 22 H 0.068 0.932 23 H 0.073 0.927 24 H 0.134 0.866 25 H 0.154 0.846 26 H 0.198 0.802 27 H 0.148 0.852 28 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.080 -1.306 -1.512 2.271 hybrid contribution 0.645 -1.967 0.190 2.078 sum 1.725 -3.272 -1.321 3.928 Atomic orbital electron populations 1.23149 0.78452 1.04612 1.01061 1.85953 1.21408 1.26355 1.90463 1.18554 0.91602 0.83866 1.11383 1.20525 0.99050 0.89853 1.01612 1.14298 0.87367 0.87131 1.28228 1.25930 0.92264 0.92520 0.91143 1.81059 1.10479 1.11136 1.15934 1.22446 0.95541 0.96408 1.04830 1.83604 0.98076 1.08753 1.80554 1.25021 1.01134 0.95654 1.16731 1.19736 0.95026 0.95662 0.97519 1.18848 0.92363 0.91260 1.13043 1.18176 0.88719 0.91906 0.88134 1.19879 1.04919 0.99495 1.20174 0.88211 1.26851 0.99603 0.98693 0.92762 1.69798 1.26631 1.32225 1.10268 0.85204 0.77209 0.77981 0.79979 1.17630 1.18011 1.18914 0.93219 0.92720 0.86612 0.84627 0.80209 0.85201 0.88447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 9.80 113.37 1.11 1.73 15 2 O -0.33 -13.01 9.91 -90.47 -0.90 -13.91 15 3 C -0.01 -0.33 6.69 22.87 0.15 -0.18 15 4 C -0.09 -3.60 8.64 22.45 0.19 -3.41 15 5 C -0.16 -6.97 5.78 -20.96 -0.12 -7.09 15 6 C 0.29 12.64 14.99 88.33 1.32 13.96 15 7 N -0.51 -22.37 18.54 19.00 0.35 -22.02 15 8 C -0.07 -3.37 6.33 23.29 0.15 -3.22 15 9 S 0.03 1.18 22.97 -56.49 -1.30 -0.12 15 10 C -0.25 -9.47 11.11 66.66 0.74 -8.73 15 11 C -0.05 -2.13 8.25 21.57 0.18 -1.96 15 12 C -0.15 -6.84 5.50 -19.97 -0.11 -6.95 15 13 C 0.14 6.50 5.50 -19.55 -0.11 6.40 15 14 C -0.42 -19.00 8.40 23.19 0.19 -18.81 15 15 H 0.10 4.42 7.91 -2.91 -0.02 4.39 15 16 C 0.04 1.82 3.83 85.36 0.33 2.15 15 17 N -0.77 -33.40 10.83 21.89 0.24 -33.16 15 18 Si 0.98 31.02 29.61 68.60 2.03 33.05 15 19 H -0.25 -7.98 7.11 99.48 0.71 -7.28 15 20 H -0.26 -7.72 7.11 99.48 0.71 -7.02 15 21 H -0.26 -8.20 7.11 99.48 0.71 -7.49 15 22 H 0.05 1.32 7.64 -2.39 -0.02 1.31 15 23 H 0.05 1.40 7.64 -2.39 -0.02 1.38 15 24 H 0.12 2.50 8.14 -2.39 -0.02 2.48 15 25 H 0.14 4.76 6.20 -2.91 -0.02 4.74 15 26 H 0.18 5.41 8.06 -2.91 -0.02 5.39 15 27 H 0.13 5.36 6.07 -2.91 -0.02 5.35 15 28 H 0.30 11.70 8.29 -92.71 -0.77 10.93 15 Total: -1.00 -53.77 267.97 5.67 -48.10 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 1.21 Total: 14.17 kcal Atomic # 6 Polarization: -30.14 SS G_CDS: 4.03 Total: -26.11 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: 0.59 Total: -55.19 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: -0.90 Total: -13.91 kcal Atomic # 14 Polarization: 31.02 SS G_CDS: 2.03 Total: 33.05 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -1.30 Total: -0.12 kcal Total: -53.77 5.67 -48.10 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396221975.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.950 kcal (2) G-P(sol) polarization free energy of solvation -53.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds