Wall clock time and date at job start Mon Mar 30 2020 06:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36200 * 116.99972 * 2 1 4 4 C 1.32247 * 122.59173 * 359.97228 * 3 2 1 5 5 S 1.75262 * 111.39852 * 180.02562 * 4 3 2 6 6 C 1.76034 * 92.26109 * 0.02562 * 5 4 3 7 7 C 1.40585 * 130.14445 * 180.02562 * 6 5 4 8 8 C 1.35640 * 121.26080 * 179.97438 * 7 6 5 9 9 C 1.41056 * 120.30639 * 359.97438 * 8 7 6 10 10 C 1.40552 * 120.17425 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99635 * 209.12612 * 10 9 8 12 12 C 1.40236 * 120.00152 * 29.12321 * 10 9 8 13 13 N 1.30671 * 120.00264 * 197.57421 * 12 10 9 14 14 Si 1.86804 * 120.00096 * 17.57627 * 12 10 9 15 15 H 1.48503 * 109.47182 * 270.00292 * 14 12 10 16 16 H 1.48501 * 109.46856 * 29.99928 * 14 12 10 17 17 H 1.48492 * 109.47193 * 149.99815 * 14 12 10 18 18 C 1.41539 * 119.64515 * 0.24954 * 9 8 7 19 19 C 1.43199 * 120.19262 * 179.74594 * 18 9 8 20 20 N 3.21022 * 138.33169 * 180.36504 * 2 1 3 21 21 C 1.39983 * 109.60181 * 0.02562 * 6 5 4 22 22 H 1.08999 * 109.46868 * 299.99664 * 1 2 3 23 23 H 1.08995 * 109.47226 * 59.99893 * 1 2 3 24 24 H 1.09003 * 109.47091 * 180.02562 * 1 2 3 25 25 H 1.08002 * 124.30311 * 0.02733 * 4 3 2 26 26 H 1.08001 * 119.36761 * 359.97438 * 7 6 5 27 27 H 1.07997 * 119.84664 * 179.97438 * 8 7 6 28 28 H 0.97000 * 119.99884 * 355.43954 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0474 1.2136 0.0000 4 6 1.3780 2.3541 -0.0005 5 16 2.4616 3.7315 -0.0011 6 6 3.8870 2.6985 -0.0014 7 6 5.2516 3.0368 -0.0014 8 6 6.2138 2.0808 -0.0011 9 6 5.8604 0.7152 -0.0002 10 6 6.8597 -0.2731 -0.0005 11 1 6.6687 -1.2339 -0.4552 12 6 8.1047 -0.0116 0.5896 13 7 9.1342 -0.7638 0.3037 14 14 8.2914 1.4120 1.7846 15 1 8.6664 2.6395 1.0376 16 1 7.0050 1.6366 2.4918 17 1 9.3510 1.0917 2.7744 18 6 4.4941 0.3456 -0.0050 19 6 4.1221 -1.0372 -0.0097 20 7 3.8271 -2.1342 -0.0136 21 6 3.4934 1.3552 -0.0016 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 0.3004 2.4275 -0.0006 26 1 5.5392 4.0778 -0.0016 27 1 7.2553 2.3665 -0.0015 28 1 9.0233 -1.5422 -0.2645 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396222166.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:38 Heat of formation + Delta-G solvation = 4.910705 kcal Electronic energy + Delta-G solvation = -16244.386546 eV Core-core repulsion = 13544.061501 eV Total energy + Delta-G solvation = -2700.325045 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.91289 -39.44727 -37.04074 -36.27731 -34.57056 -32.25704 -30.59412 -28.48593 -27.17585 -24.41361 -23.46023 -21.66027 -20.37589 -19.89834 -17.99542 -17.63120 -16.70736 -16.53981 -16.39797 -16.06406 -15.44816 -14.88178 -14.73434 -14.45900 -13.85038 -13.75107 -13.68049 -13.57682 -13.08396 -12.77441 -12.56207 -12.49802 -12.23397 -11.91070 -11.59865 -11.45165 -11.36487 -10.86231 -10.08277 -9.64415 -9.39094 -8.35397 -6.74409 -0.28295 0.37055 0.82612 1.18075 1.36906 1.45522 1.59322 1.80947 2.06105 2.11280 2.20764 2.43420 2.59405 3.34819 3.51504 3.72283 4.18665 4.24120 4.35072 4.42872 4.50849 4.64284 4.71361 4.86209 5.07219 5.13115 5.28445 5.34901 5.54970 5.73144 6.08148 6.24039 6.38720 6.55592 6.92631 7.76345 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.023490 B = 0.008312 C = 0.006411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.729896 B = 3367.664835 C = 4366.169730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.335 6.335 3 C 0.085 3.915 4 C -0.288 4.288 5 S 0.132 5.868 6 C -0.230 4.230 7 C -0.014 4.014 8 C -0.194 4.194 9 C 0.123 3.877 10 C -0.513 4.513 11 H 0.043 0.957 12 C 0.015 3.985 13 N -0.807 5.807 14 Si 1.093 2.907 15 H -0.224 1.224 16 H -0.253 1.253 17 H -0.279 1.279 18 C -0.175 4.175 19 C 0.304 3.696 20 N -0.524 5.524 21 C -0.002 4.002 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.104 0.896 25 H 0.193 0.807 26 H 0.162 0.838 27 H 0.141 0.859 28 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.103 12.906 1.171 16.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.250 6.250 3 C 0.028 3.972 4 C -0.423 4.423 5 S 0.391 5.609 6 C -0.344 4.344 7 C -0.036 4.036 8 C -0.215 4.215 9 C 0.117 3.883 10 C -0.541 4.541 11 H 0.061 0.939 12 C -0.203 4.203 13 N -0.428 5.428 14 Si 0.909 3.091 15 H -0.148 1.148 16 H -0.177 1.177 17 H -0.206 1.206 18 C -0.184 4.184 19 C -0.005 4.005 20 N -0.204 5.204 21 C -0.012 4.012 22 H 0.089 0.911 23 H 0.088 0.912 24 H 0.123 0.877 25 H 0.210 0.790 26 H 0.180 0.820 27 H 0.159 0.841 28 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.618 13.246 2.000 16.491 hybrid contribution -0.874 -3.180 -1.345 3.562 sum -10.492 10.065 0.654 14.554 Atomic orbital electron populations 1.23290 0.76448 1.04875 1.02611 1.86149 1.23340 1.26298 1.89247 1.18784 0.90452 0.85529 1.02399 1.24954 1.05048 0.95101 1.17170 1.83104 0.91539 1.05103 1.81127 1.22242 0.98916 0.94345 1.18926 1.20344 0.88552 1.00487 0.94225 1.21110 1.00248 0.91368 1.08749 1.17530 0.89694 0.93712 0.87378 1.20705 0.99546 1.00465 1.33369 0.93921 1.28810 0.89555 1.04403 0.97527 1.70533 1.31922 1.12737 1.27577 0.83495 0.78286 0.72785 0.74507 1.14784 1.17703 1.20574 1.15865 0.92826 0.83211 1.26541 1.25846 0.90547 0.92991 0.91131 1.80889 1.11113 1.12980 1.15391 1.18388 0.89184 0.93031 1.00608 0.91117 0.91169 0.87733 0.78965 0.82040 0.84128 0.90708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 9.92 113.37 1.12 1.65 15 2 O -0.34 -12.49 9.28 -95.83 -0.89 -13.38 15 3 C 0.09 3.13 6.79 23.04 0.16 3.28 15 4 C -0.29 -8.14 9.94 66.78 0.66 -7.47 15 5 S 0.13 3.52 23.23 -56.49 -1.31 2.21 15 6 C -0.23 -8.11 6.50 23.27 0.15 -7.95 15 7 C -0.01 -0.48 9.96 22.24 0.22 -0.26 15 8 C -0.19 -7.59 7.16 22.36 0.16 -7.43 15 9 C 0.12 5.88 5.14 -21.21 -0.11 5.78 15 10 C -0.51 -26.96 8.79 23.32 0.20 -26.75 15 11 H 0.04 2.52 7.49 -2.91 -0.02 2.50 15 12 C 0.01 0.73 5.42 85.35 0.46 1.19 15 13 N -0.81 -41.34 13.65 21.88 0.30 -41.04 15 14 Si 1.09 41.07 24.90 68.60 1.71 42.78 15 15 H -0.22 -6.87 6.44 99.48 0.64 -6.23 15 16 H -0.25 -9.37 7.03 99.48 0.70 -8.67 15 17 H -0.28 -10.36 7.11 99.48 0.71 -9.65 15 18 C -0.18 -8.50 5.87 -20.25 -0.12 -8.62 15 19 C 0.30 15.93 12.74 88.33 1.13 17.06 15 20 N -0.52 -28.17 18.54 19.00 0.35 -27.82 15 21 C 0.00 -0.07 6.00 -20.07 -0.12 -0.19 15 22 H 0.07 1.38 7.84 -2.39 -0.02 1.36 15 23 H 0.07 1.37 7.83 -2.39 -0.02 1.35 15 24 H 0.10 2.22 8.14 -2.39 -0.02 2.20 15 25 H 0.19 3.96 6.90 -2.91 -0.02 3.94 15 26 H 0.16 3.82 8.06 -2.91 -0.02 3.80 15 27 H 0.14 5.00 4.40 -2.91 -0.01 4.98 15 28 H 0.28 14.65 8.72 -92.71 -0.81 13.84 15 Total: -1.00 -62.73 263.79 5.18 -57.55 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: 1.10 Total: 9.43 kcal Atomic # 6 Polarization: -33.65 SS G_CDS: 3.92 Total: -29.73 kcal Atomic # 7 Polarization: -69.51 SS G_CDS: 0.65 Total: -68.86 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: -0.89 Total: -13.38 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 1.71 Total: 42.78 kcal Atomic # 16 Polarization: 3.52 SS G_CDS: -1.31 Total: 2.21 kcal Total: -62.73 5.18 -57.55 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396222166.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.457 kcal (2) G-P(sol) polarization free energy of solvation -62.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds